Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 9.3e-33 142.9 70 100.0
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 7.4e-30 133.3 66 95.5
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.8e-29 131.3 64 98.4
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 2.8e-29 131.3 64 98.4
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 4.8e-29 130.6 66 95.5
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 6.3e-29 130.2 64 96.9
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-28 129.0 64 95.3
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 4.1e-28 127.5 64 96.9
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 4.1e-28 127.5 64 96.9
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 1.0e-26 122.9 60 96.7
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 1.7e-26 122.1 63 87.3
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.0e-23 112.8 60 83.3
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 1.4e-23 112.5 63 79.4
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.8e-23 112.1 60 83.3
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 2.3e-23 111.7 63 79.4
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 3.0e-23 111.3 66 74.2
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 3.9e-23 110.9 60 83.3
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 5.1e-23 110.5 60 81.7
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 6.7e-23 110.2 63 77.8
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 6.7e-23 110.2 60 81.7
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 8.8e-23 109.8 59 83.1
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 1.1e-22 109.4 59 83.1
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 1.1e-22 109.4 60 78.3
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 2.0e-22 108.6 60 76.7
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 2.0e-22 108.6 58 86.2
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 2.6e-22 108.2 58 81.0
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 4.4e-22 107.5 60 78.3
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 4.4e-22 107.5 60 78.3
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 4.4e-22 107.5 60 78.3
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 5.7e-22 107.1 60 78.3
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 5.7e-22 107.1 60 78.3
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 5.7e-22 107.1 60 78.3
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 5.7e-22 107.1 58 81.0
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 5.7e-22 107.1 58 81.0
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 9.7e-22 106.3 60 76.7
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 9.7e-22 106.3 63 77.8
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 9.7e-22 106.3 60 80.0
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 9.7e-22 106.3 60 76.7
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 9.7e-22 106.3 62 74.2
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.3e-21 105.9 60 76.7
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 1.3e-21 105.9 58 81.0
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 1.3e-21 105.9 58 79.3
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 1.3e-21 105.9 58 79.3
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 1.3e-21 105.9 58 82.8
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.7e-21 105.5 58 81.0
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 1.7e-21 105.5 58 81.0
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 2.2e-21 105.1 60 75.0
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 2.2e-21 105.1 60 75.0
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 2.2e-21 105.1 60 75.0
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 2.2e-21 105.1 60 75.0
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 2.2e-21 105.1 60 75.0
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 2.2e-21 105.1 60 75.0
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 2.2e-21 105.1 60 75.0
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 2.2e-21 105.1 60 75.0
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 2.2e-21 105.1 60 75.0
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 2.2e-21 105.1 63 76.2
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 2.2e-21 105.1 63 76.2
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 2.2e-21 105.1 63 76.2
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 2.2e-21 105.1 58 77.6
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 2.2e-21 105.1 58 77.6
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 2.8e-21 104.8 60 75.0
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 2.8e-21 104.8 60 75.0
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 2.8e-21 104.8 58 77.6
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 4.8e-21 104.0 63 74.6
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 4.8e-21 104.0 60 76.7
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 4.8e-21 104.0 58 81.0
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 4.8e-21 104.0 63 74.6
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 4.8e-21 104.0 58 81.0
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 6.3e-21 103.6 58 79.3
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 6.3e-21 103.6 60 73.3
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 6.3e-21 103.6 62 75.8
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 8.2e-21 103.2 62 74.2
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 8.2e-21 103.2 63 76.2
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 8.2e-21 103.2 63 76.2
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 1.1e-20 102.8 63 73.0
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 1.1e-20 102.8 58 79.3
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 1.1e-20 102.8 58 79.3
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 1.1e-20 102.8 58 79.3
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 1.4e-20 102.4 58 77.6
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 1.4e-20 102.4 63 74.6
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 1.8e-20 102.1 58 77.6
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 77.6
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 2.4e-20 101.7 63 76.2
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 4.1e-20 100.9 58 77.6
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 4.1e-20 100.9 58 77.6
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 4.1e-20 100.9 58 75.9
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 4.1e-20 100.9 58 75.9
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 9.1e-20 99.8 60 75.0
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 9.1e-20 99.8 60 75.0
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 9.1e-20 99.8 60 71.7
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 2.0e-19 98.6 60 73.3
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.0e-19 98.6 58 79.3
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.0e-19 98.6 58 79.3
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 2.0e-19 98.6 58 79.3
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 2.6e-19 98.2 52 90.4
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 3.4e-19 97.8 58 75.9
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 4.5e-19 97.4 58 75.9
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 7.7e-19 96.7 58 74.1
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 1.0e-18 96.3 58 72.4
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 1.7e-18 95.5 59 76.3
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 1.7e-18 95.5 59 76.3
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 2.2e-18 95.1 60 66.7
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 5.0e-18 94.0 50 84.0
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 1.4e-17 92.4 61 70.5
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 1.4e-17 92.4 58 67.2
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 5.5e-17 90.5 50 80.0
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 1.2e-16 89.4 50 78.0
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 1.2e-16 89.4 60 65.0
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 4.7e-16 87.4 53 73.6
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 8.8e-15 83.2 52 69.2
MD11G1211600 Malus domestica HOM05D007124 ORTHO05D008980 3.8e-10 67.8 39 82.1
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 1.4e-07 59.3 62 43.5


User provided reference genes

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