Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4902 Fragaria x ananassa HOM05D006845 ORTHO05D014206 2.2e-54 215.3 103 100.0
FAN25G3098 Fragaria x ananassa HOM05D006845 ORTHO05D014206 3.1e-32 141.7 69 94.2
FAN12G2298 Fragaria x ananassa HOM05D006845 ORTHO05D014206 1.1e-29 133.3 69 89.9
FAN09G2373 Fragaria x ananassa HOM05D006845 ORTHO05D014206 2.1e-28 129.0 68 88.2
FAN11G1119 Fragaria x ananassa HOM05D006845 ORTHO05D009300 2.1e-17 92.4 50 84.0
FAN16G0640 Fragaria x ananassa HOM05D006845 ORTHO05D009300 2.1e-17 92.4 50 84.0
FAN21G2917 Fragaria x ananassa HOM05D006845 ORTHO05D009300 2.1e-17 92.4 50 84.0
FAN25G1923 Fragaria x ananassa HOM05D006845 ORTHO05D009300 2.1e-17 92.4 50 84.0
RcHm_v2.0_Chr5g0033181 Rosa chinensis HOM05D006845 ORTHO05D009300 3.6e-17 91.7 50 82.0
Aqoxy1G02380 Aquilegia oxysepala HOM05D006845 ORTHO05D009300 8.1e-17 90.5 50 80.0
FvH4_3g19780 Fragaria vesca HOM05D006845 ORTHO05D009300 1.1e-16 90.1 50 82.0
TAR627G0110 Trochodendron aralioides HOM05D006845 ORTHO05D009300 2.4e-16 89.0 50 80.0
Nn1g06500 Nelumbo nucifera HOM05D006845 ORTHO05D009300 6.9e-16 87.4 50 78.0
FAN17G1149 Fragaria x ananassa HOM05D006845 ORTHO05D014206 9.0e-16 87.0 47 87.2
QL08p022228 Quercus lobata HOM05D006845 ORTHO05D009300 1.5e-15 86.3 50 74.0
Haze_09439 Corylus avellana HOM05D006845 ORTHO05D009300 2.0e-15 85.9 50 74.0
CiPaw.11G170600 Carya illinoinensis HOM05D006845 ORTHO05D009300 3.4e-15 85.1 50 72.0
Duzib213G0603 Durio zibethinus HOM05D006845 ORTHO05D009300 4.4e-15 84.7 55 67.3
Prupe.4G179900 Prunus persica HOM05D006845 ORTHO05D009300 4.4e-15 84.7 50 72.0
CANSAT56G3540 Cannabis sativa HOM05D006845 ORTHO05D009300 5.8e-15 84.3 50 70.0
Thecc.07G091800 Theobroma cacao HOM05D006845 ORTHO05D009300 5.8e-15 84.3 50 74.0
Sabra16G0261500 Salix brachista HOM05D006845 ORTHO05D009300 7.6e-15 84.0 53 66.0
PSO541G3085 Papaver somniferum HOM05D006845 ORTHO05D009300 9.9e-15 83.6 50 70.0
PSO675G5588 Papaver somniferum HOM05D006845 ORTHO05D009300 9.9e-15 83.6 50 70.0
Potri.001G398900 Populus trichocarpa HOM05D006845 ORTHO05D009300 9.9e-15 83.6 50 70.0
Potri.011G118000 Populus trichocarpa HOM05D006845 ORTHO05D009300 9.9e-15 83.6 50 70.0
Cfa020572 Carpinus fangiana HOM05D006845 ORTHO05D009300 1.3e-14 83.2 50 74.0
Peaxi162Scf00000g00345 Petunia axillaris HOM05D006845 ORTHO05D009300 1.3e-14 83.2 50 72.0
Solyc12g013890.2 Solanum lycopersicum HOM05D006845 ORTHO05D009300 1.3e-14 83.2 50 72.0
Sopen12g007210 Solanum pennellii HOM05D006845 ORTHO05D009300 1.3e-14 83.2 50 72.0
Nitab4.5_0003378g0090 Nicotiana tabacum HOM05D006845 ORTHO05D009300 1.7e-14 82.8 50 72.0
Manes.15G087900 Manihot esculenta HOM05D006845 ORTHO05D009300 2.9e-14 82.0 50 70.0
Actinidia18770 Actinidia chinensis HOM05D006845 ORTHO05D009300 3.8e-14 81.6 50 70.0
GSVIVG01014313001 Vitis vinifera HOM05D006845 ORTHO05D009300 3.8e-14 81.6 50 70.0
CAN.G213.11 Capsicum annuum HOM05D006845 ORTHO05D009300 4.9e-14 81.3 50 70.0
MD11G1250000 Malus domestica HOM05D006845 ORTHO05D009300 4.9e-14 81.3 50 72.0
Sc16g0007040 Simmondsia chinensis HOM05D006845 ORTHO05D009300 6.4e-14 80.9 50 72.0
Gohir.A08G021200 Gossypium hirsutum HOM05D006845 ORTHO05D009300 8.4e-14 80.5 49 73.5
Actinidia35244 Actinidia chinensis HOM05D006845 ORTHO05D009300 1.1e-13 80.1 50 68.0
CSS0022560 Camellia sinensis var. sinensis HOM05D006845 ORTHO05D009300 1.1e-13 80.1 50 68.0
Dinv14926 Davidia involucrata HOM05D006845 ORTHO05D009300 1.1e-13 80.1 50 72.0
PGR083G0376 Punica granatum HOM05D006845 ORTHO05D009300 1.4e-13 79.7 49 67.3
TWI39G1089 Tripterygium wilfordii HOM05D006845 ORTHO05D009300 1.4e-13 79.7 50 70.0
Gohir.D08G031900 Gossypium hirsutum HOM05D006845 ORTHO05D009300 1.9e-13 79.3 49 71.4
Gorai.004G029400 Gossypium raimondii HOM05D006845 ORTHO05D009300 1.9e-13 79.3 49 71.4
ATR0737G060 Amborella trichopoda HOM05D006845 ORTHO05D009300 2.4e-13 79.0 50 72.0
EL10Ac4g08199 Beta vulgaris HOM05D006845 ORTHO05D009300 2.4e-13 79.0 50 70.0
Nitab4.5_0000332g0060 Nicotiana tabacum HOM05D006845 ORTHO05D009300 2.4e-13 79.0 73 56.2
Oeu051072.2 Olea europaea HOM05D006845 ORTHO05D009300 2.4e-13 79.0 50 66.0
Eucgr.F01150 Eucalyptus grandis HOM05D006845 ORTHO05D009300 3.2e-13 78.6 50 64.0
Lsat_1_v5_gn_9_97520 Lactuca sativa HOM05D006845 ORTHO05D009300 3.2e-13 78.6 63 57.1
MD03G1229200 Malus domestica HOM05D006845 ORTHO05D009300 3.2e-13 78.6 48 72.9
FAN21G0328 Fragaria x ananassa HOM05D006845 ORTHO05D014206 4.2e-13 78.2 53 75.5
Atru.chr2.2481 Acer truncatum HOM05D006845 ORTHO05D009300 5.4e-13 77.8 50 70.0
ClCG11G018010 Citrullus lanatus HOM05D006845 ORTHO05D009300 5.4e-13 77.8 50 64.0
Sed0008037 Sechium edule HOM05D006845 ORTHO05D009300 7.1e-13 77.4 50 64.0
AUR62019438 Chenopodium quinoa HOM05D006845 ORTHO05D009300 9.3e-13 77.0 50 68.0
AUR62039192 Chenopodium quinoa HOM05D006845 ORTHO05D009300 9.3e-13 77.0 50 68.0
Ciclev10008389m.g Citrus clementina HOM05D006845 ORTHO05D009300 9.3e-13 77.0 49 71.4
COL.COLO4_27185 Corchorus olitorius HOM05D006845 ORTHO05D009300 9.3e-13 77.0 50 68.0
HanXRQChr12g0364151 Helianthus annuus HOM05D006845 ORTHO05D009300 9.3e-13 77.0 50 64.0
CsaV3_4G033630 Cucumis sativus L. HOM05D006845 ORTHO05D009300 1.2e-12 76.6 54 57.4
MSTRG.14352 Avicennia marina HOM05D006845 ORTHO05D009300 1.6e-12 76.3 50 64.0
Cc05_g11930 Coffea canephora HOM05D006845 ORTHO05D009300 1.6e-12 76.3 50 64.0
arahy.Tifrunner.gnm1.ann1.61G52X Arachis hypogaea HOM05D006845 ORTHO05D009300 2.1e-12 75.9 50 66.0
arahy.Tifrunner.gnm1.ann1.ME6152 Arachis hypogaea HOM05D006845 ORTHO05D009300 2.1e-12 75.9 50 66.0
MELO3C016692.2 Cucumis melo HOM05D006845 ORTHO05D009300 2.1e-12 75.9 50 62.0
Phvul.005G073100 Phaseolus vulgaris HOM05D006845 ORTHO05D009300 2.1e-12 75.9 50 68.0
Ca_03508_v3 Cicer arietinum L. HOM05D006845 ORTHO05D009300 2.7e-12 75.5 50 68.0
DCAR_017135 Daucus carota HOM05D006845 ORTHO05D009300 2.7e-12 75.5 49 63.3
Lsat_1_v5_gn_7_87221 Lactuca sativa HOM05D003066 ORTHO05D004162 2.7e-12 75.5 50 62.0
A10p11250 Brassica napus HOM05D006845 ORTHO05D009300 3.5e-12 75.1 50 64.0
Migut.H01945 Erythranthe guttata HOM05D006845 ORTHO05D009300 3.5e-12 75.1 50 62.0
SGA_v2.0_scaffold70G23678 Striga asiatica HOM05D006845 ORTHO05D009300 3.5e-12 75.1 50 62.0
C09p43870 Brassica napus HOM05D006845 ORTHO05D009300 4.6e-12 74.7 50 64.0
BcaB08g35745 Brassica carinata HOM05D006845 ORTHO05D009300 6.0e-12 74.3 50 64.0
BraA10t43218Z Brassica rapa HOM05D006845 ORTHO05D009300 6.0e-12 74.3 50 64.0
ECA240G2176 Erigeron canadensis HOM05D006845 ORTHO05D009300 6.0e-12 74.3 50 62.0
VMungo1080G1688 Vigna mungo HOM05D006845 ORTHO05D009300 6.0e-12 74.3 50 68.0
CARHR266990 Cardamine hirsuta HOM05D006845 ORTHO05D009300 7.8e-12 73.9 50 64.0
Thhalv10013651m.g Eutrema salsugineum HOM05D006845 ORTHO05D009300 7.8e-12 73.9 50 64.0
Hma1.2p1_0898F.1_g234490 Hydrangea macrophylla HOM05D006845 ORTHO05D009300 7.8e-12 73.9 50 62.0
Sabra11G0103000 Salix brachista HOM05D006845 ORTHO05D009300 7.8e-12 73.9 45 68.9
Sp6g15920 Schrenkiella parvula HOM05D006845 ORTHO05D009300 7.8e-12 73.9 50 64.0
BcaC04g20411 Brassica carinata HOM05D006845 ORTHO05D009300 1.7e-11 72.8 50 62.0
BolC9t57269H Brassica oleracea HOM05D006845 ORTHO05D009300 1.7e-11 72.8 50 62.0
Aa31LG3G10070 Aethionema arabicum HOM05D006845 ORTHO05D009300 2.3e-11 72.4 50 62.0
Lj1C841T8 Lonicera japonica HOM05D006845 ORTHO05D009300 2.3e-11 72.4 50 58.0
CDE02G1035 Ceratophyllum demersum HOM05D006845 ORTHO05D009300 3.0e-11 72.0 50 66.0
Carub.0008s1415 Capsella rubella HOM05D006845 ORTHO05D009300 3.9e-11 71.6 50 64.0
AL8G28920 Arabidopsis lyrata HOM05D006845 ORTHO05D009300 5.1e-11 71.2 50 62.0
Lj3g0006633 Lotus japonicus HOM05D006845 ORTHO05D009300 6.6e-11 70.9 48 64.6
HPP92_003615 Vanilla planifolia HOM05D006845 ORTHO05D009300 6.6e-11 70.9 53 60.4
THA.LOC104811867 Tarenaya hassleriana HOM05D006845 ORTHO05D009300 1.1e-10 70.1 50 62.0
AT5G53860 Arabidopsis thaliana HOM05D006845 ORTHO05D009300 1.5e-10 69.7 50 60.0
FAN21G2570 Fragaria x ananassa HOM05D011847 ORTHO05D013847 1.5e-10 69.7 36 86.1
Glyma.12G225400 Glycine max HOM05D006845 ORTHO05D009300 1.5e-10 69.7 50 62.0
Glyma.13G275900 Glycine max HOM05D006845 ORTHO05D009300 2.5e-10 68.9 66 50.0
Lalb_Chr25g0286311 Lupinus albus HOM05D006845 ORTHO05D009300 3.3e-10 68.6 47 66.0
MBI02_g32976_MAGBIO Magnolia biondii HOM05D000872 ORTHO05D014206 9.6e-10 67.0 50 58.0
Psat5g242160 Pisum sativum HOM05D006845 ORTHO05D009300 2.1e-09 65.9 50 58.0
Ah.06g184430 Amaranthus hybridus HOM05D006845 ORTHO05D009300 2.8e-09 65.5 45 62.2
Hma1.2p1_0554F.1_g177810 Hydrangea macrophylla HOM05D006845 ORTHO05D014206 8.1e-09 63.9 53 52.8
TPR.G7949 Trifolium pratense HOM05D006845 ORTHO05D009300 8.1e-09 63.9 51 60.8
Lsat_1_v5_gn_4_31781 Lactuca sativa HOM05D006845 ORTHO05D014206 1.1e-08 63.5 50 54.0
Lsat_1_v5_gn_5_134240 Lactuca sativa HOM05D006845 ORTHO05D014206 1.1e-08 63.5 50 54.0
Lsat_1_v5_gn_7_62660 Lactuca sativa HOM05D006845 ORTHO05D014206 1.1e-08 63.5 50 54.0
Medtr2g079060 Medicago truncatula HOM05D006845 ORTHO05D009300 1.2e-07 60.1 51 56.9


User provided reference genes

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