Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 6.1e-135 484.2 251 100.0
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 5.2e-134 481.1 251 98.8
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 8.9e-134 480.3 251 98.8
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 2.1e-114 416.0 255 85.5
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 3.6e-103 378.6 259 74.9
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 3.4e-93 345.5 251 77.3
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 2.4e-91 339.3 258 69.0
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 1.3e-89 333.6 257 66.1
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 3.0e-89 332.4 256 69.1
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 5.1e-89 331.6 256 69.1
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 8.7e-89 330.9 255 67.5
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 2.1e-87 326.2 278 63.3
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 3.6e-87 325.5 211 79.6
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 4.8e-87 325.1 257 65.8
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 8.1e-87 324.3 254 66.9
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 1.1e-86 323.9 253 66.4
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 1.4e-86 323.6 259 65.6
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 1.4e-86 323.6 256 64.1
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 3.1e-86 322.4 253 66.0
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 6.9e-86 321.2 255 64.7
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 3.4e-85 318.9 258 67.1
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 4.5e-85 318.5 253 65.6
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 1.3e-84 317.0 253 65.2
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.7e-84 316.6 245 66.9
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 1.1e-83 313.9 256 65.6
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 1.9e-83 313.2 258 64.3
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 2.4e-83 312.8 258 63.2
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 7.1e-83 311.2 265 61.1
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 9.3e-83 310.8 257 65.0
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 1.2e-82 310.5 258 62.8
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 1.2e-82 310.5 258 63.6
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 1.6e-82 310.1 255 64.3
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 3.5e-82 308.9 260 63.1
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 6.0e-82 308.1 265 60.8
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 1.0e-81 307.4 256 61.7
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 1.3e-81 307.0 261 62.1
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 3.0e-81 305.8 260 61.2
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 3.0e-81 305.8 259 61.0
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 5.1e-81 305.1 253 63.6
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 1.1e-80 303.9 257 62.3
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 1.5e-80 303.5 254 63.0
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 1.5e-80 303.5 256 60.9
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 1.9e-80 303.1 254 60.6
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 1.9e-80 303.1 260 61.2
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 3.3e-80 302.4 264 61.0
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 5.6e-80 301.6 258 64.0
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 7.4e-80 301.2 253 63.6
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 1.3e-79 300.4 255 61.6
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 1.6e-79 300.1 259 61.4
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 1.6e-79 300.1 254 62.2
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 4.8e-79 298.5 256 60.9
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 6.2e-79 298.1 284 59.5
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 6.2e-79 298.1 267 60.7
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 2.4e-78 296.2 255 60.4
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 5.3e-78 295.0 250 62.0
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 1.2e-77 293.9 261 59.0
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 1.2e-77 293.9 259 61.8
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 2.6e-77 292.7 256 61.7
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 2.6e-77 292.7 259 61.8
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 2.9e-76 289.3 257 59.9
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 3.8e-76 288.9 255 61.6
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 4.9e-76 288.5 251 60.6
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 8.4e-76 287.7 254 59.1
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.1e-75 287.3 258 59.3
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 2.5e-75 286.2 256 60.9
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 3.2e-75 285.8 254 60.2
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 4.2e-75 285.4 250 60.0
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 5.5e-75 285.0 255 59.2
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 1.2e-74 283.9 251 59.0
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 1.6e-74 283.5 250 58.4
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 3.5e-74 282.3 255 60.0
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 3.9e-73 278.9 254 56.7
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 5.1e-73 278.5 267 54.7
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 6.7e-73 278.1 254 58.3
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 1.1e-72 277.3 253 58.1
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.3e-71 273.9 254 57.1
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 1.3e-71 273.9 268 55.2
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 2.8e-71 272.7 256 57.0
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 8.2e-71 271.2 256 57.0
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 1.1e-70 270.8 261 59.0
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 5.3e-70 268.5 259 56.4
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 1.3e-68 263.8 265 53.2
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.3e-68 263.8 243 55.6
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.3e-68 263.8 216 62.0
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 6.5e-68 261.5 256 56.2
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 1.9e-67 260.0 279 52.0
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 7.2e-67 258.1 281 52.0
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 1.3e-65 253.8 255 53.3
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 4.3e-64 248.8 259 51.0
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 3.1e-62 242.7 260 53.1
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 1.2e-61 240.7 252 50.0
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 5.9e-61 238.4 249 50.6
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 5.0e-60 235.3 301 46.5
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 6.1e-58 228.4 257 50.6
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.1e-54 217.6 195 62.1
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 1.3e-52 210.7 251 49.4
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 1.8e-46 190.3 154 66.2
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 4.2e-43 179.1 243 42.0
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 4.2e-43 179.1 152 57.2
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 3.3e-40 169.5 172 54.7
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 5.3e-38 162.2 127 70.1
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 2.2e-31 140.2 144 58.3
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 4.1e-30 136.0 247 38.1
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 1.7e-28 130.6 239 36.4
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 2.2e-15 87.0 92 42.4
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 4.9e-15 85.9 228 31.6
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 8.3e-15 85.1 64 57.8
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 1.4e-14 84.3 228 31.6
HPP92_017340 Vanilla planifolia HOM05D002897 ORTHO05D008718 2.6e-08 63.5 111 39.6
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 1.9e-06 57.4 106 35.8


User provided reference genes

Program Settings