Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4865 Fragaria x ananassa HOM05D005233 ORTHO05D038929 5.6e-61 237.3 108 100.0
FvH4_2g35490 Fragaria vesca HOM05D005233 ORTHO05D006308 3.0e-30 135.2 73 80.8
FAN27G0538 Fragaria x ananassa HOM05D005233 ORTHO05D006308 3.0e-30 135.2 73 80.8
FAN20G2629 Fragaria x ananassa HOM05D005233 ORTHO05D006308 6.7e-30 134.0 73 79.5
RcHm_v2.0_Chr6g0306311 Rosa chinensis HOM05D005233 ORTHO05D006308 4.3e-29 131.3 73 78.1
RcHm_v2.0_Chr6g0306371 Rosa chinensis HOM05D005233 ORTHO05D006308 4.3e-29 131.3 73 78.1
MELO3C011138.2 Cucumis melo HOM05D005233 ORTHO05D006308 9.1e-27 123.6 73 72.6
CsaV3_2G030830 Cucumis sativus L. HOM05D005233 ORTHO05D006308 1.2e-26 123.2 73 72.6
ClCG08G012200 Citrullus lanatus HOM05D005233 ORTHO05D006308 3.4e-26 121.7 73 69.9
Prupe.1G447900 Prunus persica HOM05D005233 ORTHO05D006308 5.9e-26 120.9 73 74.0
COL.COLO4_20973 Corchorus olitorius HOM05D005233 ORTHO05D006308 1.0e-25 120.2 73 72.6
Actinidia30278 Actinidia chinensis HOM05D005233 ORTHO05D006308 2.2e-25 119.0 73 71.2
CiPaw.07G203900 Carya illinoinensis HOM05D005233 ORTHO05D006308 2.9e-25 118.6 70 71.4
Duzib168G1333 Durio zibethinus HOM05D005233 ORTHO05D006308 2.9e-25 118.6 73 71.2
CSS0000397 Camellia sinensis var. sinensis HOM05D005233 ORTHO05D006308 5.0e-25 117.9 73 69.9
Thecc.09G045600 Theobroma cacao HOM05D005233 ORTHO05D006308 5.0e-25 117.9 73 67.1
Atru.BG.8.p Acer truncatum HOM05D005233 ORTHO05D006308 8.5e-25 117.1 69 75.4
Atru.chr7.2085 Acer truncatum HOM05D005233 ORTHO05D006308 8.5e-25 117.1 69 75.4
Dinv23373 Davidia involucrata HOM05D005233 ORTHO05D006308 1.4e-24 116.3 69 71.0
Rhsim02G0177000 Rhododendron simsii HOM05D005233 ORTHO05D006308 1.9e-24 115.9 73 69.9
Haze_21891 Corylus avellana HOM05D005233 ORTHO05D006308 2.5e-24 115.5 69 72.5
PGR031G2838 Punica granatum HOM05D005233 ORTHO05D006308 5.5e-24 114.4 73 67.1
Cfa013368 Carpinus fangiana HOM05D005233 ORTHO05D006308 9.4e-24 113.6 69 71.0
Cpa.g.sc78.3 Carica papaya HOM05D005233 ORTHO05D006308 1.2e-23 113.2 69 62.3
Sed0010019 Sechium edule HOM05D005233 ORTHO05D006308 1.2e-23 113.2 73 61.6
MD15G1093100 Malus domestica HOM05D005233 ORTHO05D006308 3.6e-23 111.7 69 71.0
Gohir.A07G022400 Gossypium hirsutum HOM05D005233 ORTHO05D006308 4.7e-23 111.3 73 69.9
Gohir.D07G025800 Gossypium hirsutum HOM05D005233 ORTHO05D006308 6.1e-23 110.9 73 68.5
Gorai.001G026900 Gossypium raimondii HOM05D005233 ORTHO05D006308 6.1e-23 110.9 73 68.5
Ciclev10008071m.g Citrus clementina HOM05D005233 ORTHO05D006308 1.0e-22 110.2 69 69.6
Eucgr.C00598 Eucalyptus grandis HOM05D005233 ORTHO05D006308 1.8e-22 109.4 69 66.7
Lj7C700G7 Lonicera japonica HOM05D005233 ORTHO05D006308 1.8e-22 109.4 73 64.4
TWI63G1465 Tripterygium wilfordii HOM05D005233 ORTHO05D006308 1.8e-22 109.4 73 64.4
MSTRG.25910 Avicennia marina HOM05D005233 ORTHO05D006308 3.0e-22 108.6 69 66.7
AUR62009274 Chenopodium quinoa HOM05D005233 ORTHO05D006308 6.7e-22 107.5 73 67.1
AUR62039706 Chenopodium quinoa HOM05D005233 ORTHO05D006308 6.7e-22 107.5 73 67.1
Potri.018G044400 Populus trichocarpa HOM05D005233 ORTHO05D006308 6.7e-22 107.5 73 64.4
SalBow4G2901 Salvia bowleyana HOM05D005233 ORTHO05D006308 8.8e-22 107.1 73 60.3
Manes.03G058900 Manihot esculenta HOM05D005233 ORTHO05D006308 2.6e-21 105.5 73 68.5
GSVIVG01035620001 Vitis vinifera HOM05D005233 ORTHO05D006308 4.4e-21 104.8 73 67.1
QL05p071834 Quercus lobata HOM05D005233 ORTHO05D006308 5.7e-21 104.4 73 63.0
VMungo1117G0001 Vigna mungo HOM05D005233 ORTHO05D006308 5.7e-21 104.4 73 63.0
Oeu043884.1 Olea europaea HOM05D005233 ORTHO05D006308 7.4e-21 104.0 69 65.2
CANSAT35G1732 Cannabis sativa HOM05D005233 ORTHO05D006308 9.7e-21 103.6 71 66.2
Sabra18G0044300 Salix brachista HOM05D005233 ORTHO05D006308 9.7e-21 103.6 73 61.6
Hma1.2p1_0049F.1_g028560 Hydrangea macrophylla HOM05D005233 ORTHO05D006308 1.3e-20 103.2 73 67.1
Nitab4.5_0001515g0020 Nicotiana tabacum HOM05D005233 ORTHO05D006308 1.3e-20 103.2 69 63.8
Nitab4.5_0003794g0030 Nicotiana tabacum HOM05D005233 ORTHO05D006308 1.3e-20 103.2 69 63.8
HanXRQChr13g0402051 Helianthus annuus HOM05D005233 ORTHO05D006308 1.7e-20 102.8 72 62.5
Solyc08g066570.3 Solanum lycopersicum HOM05D005233 ORTHO05D006308 2.2e-20 102.4 73 60.3
Sopen08g020410 Solanum pennellii HOM05D005233 ORTHO05D006308 2.2e-20 102.4 73 60.3
Ah.16g105800 Amaranthus hybridus HOM05D005233 ORTHO05D006308 2.8e-20 102.1 73 60.3
vmacro11057 Vaccinium macrocarpon HOM05D005233 ORTHO05D006308 2.8e-20 102.1 73 65.8
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 3.7e-20 101.7 73 58.9
EL10Ac2g04015 Beta vulgaris HOM05D005233 ORTHO05D006308 4.8e-20 101.3 69 62.3
Glyma.14G145900 Glycine max HOM05D005233 ORTHO05D006308 4.8e-20 101.3 73 58.9
Peaxi162Scf00227g00811 Petunia axillaris HOM05D005233 ORTHO05D006308 4.8e-20 101.3 69 62.3
Phvul.001G074200 Phaseolus vulgaris HOM05D005233 ORTHO05D006308 4.8e-20 101.3 73 60.3
CAN.G400.12 Capsicum annuum HOM05D005233 ORTHO05D006308 1.4e-19 99.8 73 58.9
PGSC0003DMG400002226 Solanum tuberosum HOM05D005233 ORTHO05D006308 1.4e-19 99.8 73 58.9
ECA233G5498 Erigeron canadensis HOM05D005233 ORTHO05D006308 1.8e-19 99.4 69 62.3
Lsat_1_v5_gn_6_22621 Lactuca sativa HOM05D005233 ORTHO05D006308 1.8e-19 99.4 69 60.9
Psat5g021200 Pisum sativum HOM05D005233 ORTHO05D006308 2.4e-19 99.0 71 60.6
Cc08_g09650 Coffea canephora HOM05D005233 ORTHO05D006308 6.9e-19 97.4 73 63.0
Ca_15589_v3 Cicer arietinum L. HOM05D005233 ORTHO05D006308 9.1e-19 97.1 69 60.9
Glyma.04G084400 Glycine max HOM05D005233 ORTHO05D006308 9.1e-19 97.1 73 57.5
Lalb_Chr23g0269641 Lupinus albus HOM05D005233 ORTHO05D006308 9.1e-19 97.1 69 59.4
arahy.Tifrunner.gnm1.ann1.8C5A90 Arachis hypogaea HOM05D005233 ORTHO05D006308 1.2e-18 96.7 69 63.8
arahy.Tifrunner.gnm1.ann1.MXXD4G Arachis hypogaea HOM05D005233 ORTHO05D006308 1.2e-18 96.7 69 63.8
Hund19511 Selenicereus undatus HOM05D005233 ORTHO05D006308 1.2e-18 96.7 75 61.3
Sc24g0002330 Simmondsia chinensis HOM05D005233 ORTHO05D006308 3.4e-18 95.1 70 61.4
TAR624G0235 Trochodendron aralioides HOM05D005233 ORTHO05D006308 3.4e-18 95.1 69 58.0
Ca_12755_v3 Cicer arietinum L. HOM05D005233 ORTHO05D006308 4.5e-18 94.7 74 54.1
Aqoxy7G03898 Aquilegia oxysepala HOM05D005233 ORTHO05D006308 5.9e-18 94.4 73 56.2
DCAR_003122 Daucus carota HOM05D005233 ORTHO05D006308 5.9e-18 94.4 69 55.1
Medtr3g109650 Medicago truncatula HOM05D005233 ORTHO05D006308 5.9e-18 94.4 69 59.4
TPR.G24537 Trifolium pratense HOM05D005233 ORTHO05D006308 5.9e-18 94.4 74 54.1
Medtr1g006695 Medicago truncatula HOM05D005233 ORTHO05D006308 7.7e-18 94.0 74 54.1
VMungo1309G2609 Vigna mungo HOM05D005233 ORTHO05D006308 1.0e-17 93.6 74 52.7
Zm00001eb154440 Zea mays HOM05D005233 ORTHO05D006308 1.0e-17 93.6 73 53.4
MBI04_g40323_MAGBIO Magnolia biondii HOM05D005233 ORTHO05D006308 1.3e-17 93.2 69 56.5
MBI04_g45218_MAGBIO Magnolia biondii HOM05D005233 ORTHO05D006308 1.3e-17 93.2 69 56.5
BcaC03g13377 Brassica carinata HOM05D005233 ORTHO05D006308 1.7e-17 92.8 55 69.1
C02p05220 Brassica napus HOM05D005233 ORTHO05D006308 1.7e-17 92.8 55 69.1
Lj1g0023868 Lotus japonicus HOM05D005233 ORTHO05D006308 2.2e-17 92.4 69 56.5
TPR.G15096 Trifolium pratense HOM05D005233 ORTHO05D006308 2.2e-17 92.4 69 58.0
Lsat_1_v5_gn_5_33641 Lactuca sativa HOM05D005233 ORTHO05D006308 2.9e-17 92.0 69 62.3
Phvul.009G110000 Phaseolus vulgaris HOM05D005233 ORTHO05D006308 2.9e-17 92.0 73 53.4
ATR0705G210 Amborella trichopoda HOM05D005233 ORTHO05D006308 3.8e-17 91.7 73 50.7
A02p01080 Brassica napus HOM05D005233 ORTHO05D006308 3.8e-17 91.7 55 67.3
BraA02t05088Z Brassica rapa HOM05D005233 ORTHO05D006308 3.8e-17 91.7 55 67.3
PSO210G1892 Papaver somniferum HOM05D005233 ORTHO05D006308 3.8e-17 91.7 69 55.1
BcaNung01936 Brassica carinata HOM05D005233 ORTHO05D006308 5.0e-17 91.3 53 69.8
BolC2t06474H Brassica oleracea HOM05D005233 ORTHO05D006308 8.5e-17 90.5 55 67.3
CARHR201640 Cardamine hirsuta HOM05D005233 ORTHO05D006308 8.5e-17 90.5 53 69.8
HanXRQChr08g0234411 Helianthus annuus HOM05D005233 ORTHO05D006308 1.1e-16 90.1 69 59.4
ECA246G0608 Erigeron canadensis HOM05D005233 ORTHO05D006308 1.4e-16 89.7 69 58.0
Aa31LG3G15600 Aethionema arabicum HOM05D005233 ORTHO05D006308 1.9e-16 89.4 69 59.4
AL6G22270 Arabidopsis lyrata HOM05D005233 ORTHO05D006308 1.9e-16 89.4 53 67.9
AT5G11580 Arabidopsis thaliana HOM05D005233 ORTHO05D006308 2.5e-16 89.0 69 58.0
Thhalv10013150m.g Eutrema salsugineum HOM05D005233 ORTHO05D006308 2.5e-16 89.0 53 67.9
Sp6g32030 Schrenkiella parvula HOM05D005233 ORTHO05D006308 3.2e-16 88.6 53 67.9
Migut.A00200 Erythranthe guttata HOM05D005233 ORTHO05D006308 4.2e-16 88.2 73 52.1
Carub.0006s1006 Capsella rubella HOM05D005233 ORTHO05D006308 7.2e-16 87.4 53 67.9
arahy.Tifrunner.gnm1.ann1.4P6J47 Arachis hypogaea HOM05D005233 ORTHO05D006308 9.4e-16 87.0 69 55.1
Os01g0725600 Oryza sativa ssp. japonica HOM05D005233 ORTHO05D006308 1.2e-15 86.7 73 50.7
HPP92_005574 Vanilla planifolia HOM05D005233 ORTHO05D006308 3.6e-15 85.1 73 52.1
arahy.Tifrunner.gnm1.ann1.SBH6GM Arachis hypogaea HOM05D005233 ORTHO05D006308 4.7e-15 84.7 63 60.3
SEGI_28740 Sequoiadendron giganteum HOM05D005233 ORTHO05D006308 1.8e-14 82.8 69 52.2
SGA_v2.0_scaffold103G30010 Striga asiatica HOM05D005233 ORTHO05D006308 2.6e-13 79.0 73 46.6
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 7.4e-13 77.4 65 53.8
Pp3c7_12470 Physcomitrium patens HOM05D005233 ORTHO05D006308 1.7e-12 76.3 77 46.8
Pp3c19_13410 Physcomitrium patens HOM05D005233 ORTHO05D006308 2.2e-12 75.9 74 47.3
Pp3c21_18100 Physcomitrium patens HOM05D005233 ORTHO05D006308 3.7e-12 75.1 74 47.3
Pp3c22_14560 Physcomitrium patens HOM05D005233 ORTHO05D006308 3.7e-12 75.1 77 49.4
Pp3c2_21710 Physcomitrium patens HOM05D005233 ORTHO05D006308 8.2e-12 73.9 77 45.5
Pp3c1_16260 Physcomitrium patens HOM05D005233 ORTHO05D006308 1.6e-10 69.7 74 44.6
arahy.Tifrunner.gnm1.ann1.805ECA Arachis hypogaea HOM05D005233 ORTHO05D038929 3.5e-10 68.6 49 61.2
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 1.7e-09 66.2 51 62.7
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.5e-08 63.2 83 47.0
CBR_g29831 Chara braunii HOM05D005233 ORTHO05D006308 6.1e-07 57.8 83 37.3
Glyma.05G194400 Glycine max HOM05D000189 ORTHO05D004078 6.7e-06 54.3 102 33.3
Psat7g044560 Pisum sativum HOM05D000189 ORTHO05D004078 8.8e-06 53.9 102 34.3


User provided reference genes

Program Settings