Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4809 Fragaria x ananassa HOM05D003811 ORTHO05D004470 6.0e-141 504.2 262 100.0
FAN02G0923 Fragaria x ananassa HOM05D003811 ORTHO05D004470 3.0e-100 369.0 257 79.8
FvH4_6g24780 Fragaria vesca HOM05D003811 ORTHO05D004470 6.5e-95 351.3 260 78.8
FAN22G1182 Fragaria x ananassa HOM05D003811 ORTHO05D004470 9.1e-89 330.9 261 73.9
FAN17G0360 Fragaria x ananassa HOM05D003811 ORTHO05D004470 5.9e-88 328.2 260 75.0
FAN07G1538 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.3e-87 327.0 259 75.3
FvH4_4g07270 Fragaria vesca HOM05D003811 ORTHO05D004470 1.6e-85 320.1 260 73.5
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.4e-84 317.0 262 73.7
RcHm_v2.0_Chr4g0399481 Rosa chinensis HOM05D003811 ORTHO05D004470 8.8e-76 287.7 263 68.8
FAN24G1311 Fragaria x ananassa HOM05D003811 ORTHO05D004470 7.7e-56 221.5 143 87.4
FvH4_2g01490 Fragaria vesca HOM05D003811 ORTHO05D004470 1.9e-54 216.9 143 86.0
MD13G1239300 Malus domestica HOM05D003811 ORTHO05D004470 9.5e-46 188.0 267 49.8
Peaxi162Scf01038g00011 Petunia axillaris HOM05D003811 ORTHO05D004470 1.5e-38 164.1 274 42.0
Actinidia38496 Actinidia chinensis HOM05D003811 ORTHO05D004470 3.3e-38 162.9 259 45.9
Cpa.g.sc95.8 Carica papaya HOM05D003811 ORTHO05D004470 3.3e-38 162.9 266 47.0
MD16G1248400 Malus domestica HOM05D003811 ORTHO05D004470 7.3e-38 161.8 278 46.4
TAR620G0001 Trochodendron aralioides HOM05D003811 ORTHO05D004470 1.6e-37 160.6 254 48.0
Lsat_1_v5_gn_7_56240 Lactuca sativa HOM05D003811 ORTHO05D004470 2.1e-37 160.2 263 43.7
Cfa013454 Carpinus fangiana HOM05D003811 ORTHO05D004470 1.1e-36 157.9 265 43.4
CAN.G192.5 Capsicum annuum HOM05D003811 ORTHO05D004470 1.8e-36 157.1 271 39.1
GSVIVG01010855001 Vitis vinifera HOM05D003811 ORTHO05D004470 1.8e-36 157.1 263 45.6
Prupe.1G074900 Prunus persica HOM05D003811 ORTHO05D004470 6.8e-36 155.2 280 45.7
vmacro05996 Vaccinium macrocarpon HOM05D003811 ORTHO05D004470 8.9e-36 154.8 263 41.1
DCAR_018030 Daucus carota HOM05D003811 ORTHO05D004470 1.5e-35 154.1 261 41.8
Thecc.09G186300 Theobroma cacao HOM05D003811 ORTHO05D004470 1.5e-35 154.1 260 44.2
Ciclev10008308m.g Citrus clementina HOM05D003811 ORTHO05D004470 2.0e-35 153.7 263 45.2
Duzib168G0111 Durio zibethinus HOM05D003811 ORTHO05D004470 2.6e-35 153.3 263 43.7
HanXRQChr03g0065501 Helianthus annuus HOM05D003811 ORTHO05D004470 2.6e-35 153.3 253 41.5
Dinv25445 Davidia involucrata HOM05D003811 ORTHO05D004470 4.4e-35 152.5 270 42.6
Nitab4.5_0000491g0080 Nicotiana tabacum HOM05D003811 ORTHO05D004470 4.4e-35 152.5 269 40.1
Hma1.2p1_1326F.1_g275850 Hydrangea macrophylla HOM05D003811 ORTHO05D004470 9.8e-35 151.4 263 43.7
ECA240G2391 Erigeron canadensis HOM05D003811 ORTHO05D004470 1.7e-34 150.6 264 40.2
Solyc07g008540.3 Solanum lycopersicum HOM05D003811 ORTHO05D004470 1.7e-34 150.6 272 39.7
Migut.J00797 Erythranthe guttata HOM05D003811 ORTHO05D004470 2.9e-34 149.8 264 42.0
Nitab4.5_0000949g0020 Nicotiana tabacum HOM05D003811 ORTHO05D004470 2.9e-34 149.8 273 41.0
Rhsim03G0266200 Rhododendron simsii HOM05D003811 ORTHO05D004470 6.4e-34 148.7 258 41.9
Sopen07g004460 Solanum pennellii HOM05D003811 ORTHO05D004470 8.3e-34 148.3 272 39.0
PGSC0003DMG400022983 Solanum tuberosum HOM05D003811 ORTHO05D004470 1.9e-33 147.1 272 40.1
ECA234G4485 Erigeron canadensis HOM05D003811 ORTHO05D004470 3.2e-33 146.4 261 42.9
Hund13780 Selenicereus undatus HOM05D003811 ORTHO05D004470 4.1e-33 146.0 273 40.7
Oeu006847.1 Olea europaea HOM05D003811 ORTHO05D004470 7.1e-33 145.2 257 41.2
Manes.06G019300 Manihot esculenta HOM05D003811 ORTHO05D004470 1.6e-32 144.1 265 42.3
Nitab4.5_0000949g0010 Nicotiana tabacum HOM05D003811 ORTHO05D004470 1.6e-32 144.1 269 39.0
HanXRQChr09g0245431 Helianthus annuus HOM05D003811 ORTHO05D004470 2.1e-32 143.7 253 40.7
CSS0000053 Camellia sinensis var. sinensis HOM05D003811 ORTHO05D004470 2.7e-32 143.3 184 48.4
CiPaw.07G197300 Carya illinoinensis HOM05D003811 ORTHO05D004470 6.0e-32 142.1 267 41.6
Cc06_g20840 Coffea canephora HOM05D003811 ORTHO05D004470 1.3e-31 141.0 282 37.9
TWI63G0214 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 1.3e-31 141.0 256 44.9
ClCG11G011760 Citrullus lanatus HOM05D003811 ORTHO05D004470 1.7e-31 140.6 271 42.1
COL.COLO4_07099 Corchorus olitorius HOM05D003811 ORTHO05D004470 1.1e-30 137.9 263 38.4
Oeu018819.1 Olea europaea HOM05D003811 ORTHO05D004470 3.3e-30 136.3 267 44.2
Sabra06G0055900 Salix brachista HOM05D003811 ORTHO05D004470 3.3e-30 136.3 280 42.1
Potri.006G075200 Populus trichocarpa HOM05D003811 ORTHO05D004470 5.6e-30 135.6 289 41.9
Oeu034800.1 Olea europaea HOM05D003811 ORTHO05D004470 3.6e-29 132.9 262 40.1
Sabra18G0116100 Salix brachista HOM05D003811 ORTHO05D004470 4.7e-29 132.5 296 40.9
Aqoxy7G02811 Aquilegia oxysepala HOM05D003811 ORTHO05D004470 6.2e-29 132.1 254 40.2
arahy.Tifrunner.gnm1.ann1.YRC4PH Arachis hypogaea HOM05D003811 ORTHO05D004470 1.1e-28 131.3 254 41.7
Eucgr.C00112 Eucalyptus grandis HOM05D003811 ORTHO05D004470 1.1e-28 131.3 254 41.3
Atru.chr7.754 Acer truncatum HOM05D003811 ORTHO05D004470 1.4e-28 131.0 258 43.0
MELO3C003975.2 Cucumis melo HOM05D003811 ORTHO05D004470 1.4e-28 131.0 278 38.8
CsaV3_2G008720 Cucumis sativus L. HOM05D003811 ORTHO05D004470 1.4e-28 131.0 281 38.4
Atru.chr7.775 Acer truncatum HOM05D003811 ORTHO05D004470 3.1e-28 129.8 258 42.6
arahy.Tifrunner.gnm1.ann1.0QJD35 Arachis hypogaea HOM05D003811 ORTHO05D004470 4.0e-28 129.4 253 40.7
Duzib150G1212 Durio zibethinus HOM05D003811 ORTHO05D004470 4.4e-27 125.9 261 39.8
Ah.10g036890 Amaranthus hybridus HOM05D003811 ORTHO05D004470 7.6e-27 125.2 279 37.6
DCAR_014667 Daucus carota HOM05D003811 ORTHO05D004470 7.6e-27 125.2 185 47.6
Oeu019552.1 Olea europaea HOM05D003811 ORTHO05D004470 1.7e-26 124.0 198 47.0
Migut.L01879 Erythranthe guttata HOM05D003811 ORTHO05D004470 4.9e-26 122.5 263 38.8
Lsat_1_v5_gn_5_83141 Lactuca sativa HOM05D003811 ORTHO05D004470 4.9e-26 122.5 266 37.2
EL10Ac2g04726 Beta vulgaris HOM05D003811 ORTHO05D004470 1.9e-25 120.6 285 35.1
TPR.G32975 Trifolium pratense HOM05D003811 ORTHO05D004470 1.9e-25 120.6 260 39.2
Ah.16g102470 Amaranthus hybridus HOM05D003811 ORTHO05D008019 3.2e-25 119.8 280 37.1
HanXRQChr10g0308851 Helianthus annuus HOM05D003811 ORTHO05D004470 3.2e-25 119.8 259 40.2
QL02p046940 Quercus lobata HOM05D003811 ORTHO05D004470 4.1e-25 119.4 262 38.5
Glyma.13G100700 Glycine max HOM05D003811 ORTHO05D004470 5.4e-25 119.0 258 39.9
Psat4g013600 Pisum sativum HOM05D003811 ORTHO05D004470 5.4e-25 119.0 260 36.9
Sed0004951 Sechium edule HOM05D003811 ORTHO05D004470 5.4e-25 119.0 256 38.7
Lalb_Chr07g0180651 Lupinus albus HOM05D003811 ORTHO05D004470 7.1e-25 118.6 255 38.0
Ca_27932_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 9.2e-25 118.2 255 37.3
Lj4g0014027 Lotus japonicus HOM05D003811 ORTHO05D004470 1.6e-24 117.5 255 40.4
VMungo1215G0314 Vigna mungo HOM05D003811 ORTHO05D004470 2.1e-24 117.1 267 37.1
Phvul.003G141200 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 6.0e-24 115.5 261 38.3
MSTRG.26548 Avicennia marina HOM05D003811 ORTHO05D004470 7.8e-24 115.2 207 40.6
Aa31LG3G13080 Aethionema arabicum HOM05D003811 ORTHO05D004470 1.0e-23 114.8 285 33.3
Manes.14G159300 Manihot esculenta HOM05D003811 ORTHO05D004470 1.0e-23 114.8 201 42.3
Lj5C615T3 Lonicera japonica HOM05D003811 ORTHO05D004470 2.3e-23 113.6 205 40.0
Sed0025374 Sechium edule HOM05D003811 ORTHO05D004470 5.1e-23 112.5 209 43.1
Thhalv10013517m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 6.6e-23 112.1 276 36.2
Hund16072 Selenicereus undatus HOM05D003811 ORTHO05D004470 6.6e-23 112.1 307 34.2
Lj5C612T1 Lonicera japonica HOM05D003811 ORTHO05D004470 1.5e-22 110.9 205 39.5
Lalb_Chr13g0299991 Lupinus albus HOM05D003811 ORTHO05D004470 1.5e-22 110.9 254 39.8
Medtr4g127420 Medicago truncatula HOM05D003811 ORTHO05D004470 1.5e-22 110.9 257 38.5
Glyma.17G059100 Glycine max HOM05D003811 ORTHO05D004470 2.5e-22 110.2 253 38.7
Potri.018G142100 Populus trichocarpa HOM05D003811 ORTHO05D004470 4.3e-22 109.4 239 42.3
Sp6g18910 Schrenkiella parvula HOM05D003811 ORTHO05D004470 4.3e-22 109.4 281 40.2
Lalb_Chr12g0199621 Lupinus albus HOM05D003811 ORTHO05D004470 5.6e-22 109.0 255 37.3
C09p49010 Brassica napus HOM05D003811 ORTHO05D004470 4.7e-21 105.9 259 37.5
PGR001G0001 Punica granatum HOM05D003811 ORTHO05D004470 6.2e-21 105.5 253 39.9
BolC9t57752H Brassica oleracea HOM05D003811 ORTHO05D004470 8.1e-21 105.1 259 36.7
BcaC04g19992 Brassica carinata HOM05D003811 ORTHO05D004470 2.4e-20 103.6 259 37.5
MSTRG.10438 Avicennia marina HOM05D003811 ORTHO05D004470 3.1e-20 103.2 256 34.4
PSO170G1122 Papaver somniferum HOM05D003811 ORTHO05D004470 3.1e-20 103.2 269 37.5
A10p14570 Brassica napus HOM05D003811 ORTHO05D004470 4.0e-20 102.8 257 38.5
ECA236G3708 Erigeron canadensis HOM05D003811 ORTHO05D004470 5.2e-20 102.4 251 34.7
PSO063G0992 Papaver somniferum HOM05D003811 ORTHO05D004470 1.5e-19 100.9 272 38.2
BraA10t43544Z Brassica rapa HOM05D003811 ORTHO05D004470 3.4e-19 99.8 256 37.5
Sc10g0001710 Simmondsia chinensis HOM05D003811 ORTHO05D004470 3.4e-19 99.8 198 37.9
BcaB08g36076 Brassica carinata HOM05D003811 ORTHO05D004470 5.8e-19 99.0 262 35.9
Lsat_1_v5_gn_8_69001 Lactuca sativa HOM05D003811 ORTHO05D004470 9.9e-19 98.2 190 36.3
Actinidia29953 Actinidia chinensis HOM05D003811 ORTHO05D004470 1.3e-18 97.8 156 43.6
CiPaw.08G032400 Carya illinoinensis HOM05D003811 ORTHO05D004470 2.9e-18 96.7 262 36.6
CDE06G2566 Ceratophyllum demersum HOM05D003811 ORTHO05D004470 3.8e-18 96.3 261 33.7
MBI13_g34046_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 1.9e-17 94.0 264 35.2
AL8G33110 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 2.4e-17 93.6 280 35.4
CARHR233500 Cardamine hirsuta HOM05D003811 ORTHO05D004470 2.4e-17 93.6 257 31.1
AT5G57180 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 9.3e-17 91.7 281 33.1
HanXRQChr05g0141071 Helianthus annuus HOM05D003811 ORTHO05D004470 1.2e-16 91.3 194 35.1
Rhsim01G0116800 Rhododendron simsii HOM05D003811 ORTHO05D004470 1.6e-16 90.9 228 32.0
SalBow5G0957 Salvia bowleyana HOM05D003811 ORTHO05D004470 2.1e-16 90.5 263 33.1
SalBow5G4432 Salvia bowleyana HOM05D003811 ORTHO05D004470 3.5e-16 89.7 265 32.8
BcaC06g32778 Brassica carinata HOM05D003811 ORTHO05D004470 4.6e-16 89.4 259 35.5
BcaB05g22326 Brassica carinata HOM05D003811 ORTHO05D004470 7.8e-16 88.6 262 32.8
Glyma.15G166500 Glycine max HOM05D003811 ORTHO05D004470 7.8e-16 88.6 256 32.0
Glyma.09G059800 Glycine max HOM05D003811 ORTHO05D004470 1.0e-15 88.2 254 32.7
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 1.0e-15 88.2 183 34.4
AUR62012114 Chenopodium quinoa HOM05D003811 ORTHO05D004470 1.3e-15 87.8 293 30.4
Thhalv10025322m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 1.7e-15 87.4 257 33.5
Sp7g24010 Schrenkiella parvula HOM05D003811 ORTHO05D004470 1.7e-15 87.4 276 33.7
SGA_v2.0_scaffold31G12764 Striga asiatica HOM05D003811 ORTHO05D004470 6.6e-15 85.5 264 37.5
AUR62040721 Chenopodium quinoa HOM05D003811 ORTHO05D004470 1.1e-14 84.7 274 33.9
BraA02t05937Z Brassica rapa HOM05D003811 ORTHO05D004470 1.5e-14 84.3 258 33.3
MBI16_g05834_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 1.5e-14 84.3 182 37.4
TWI34G1601 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 1.5e-14 84.3 196 37.8
A02p08670 Brassica napus HOM05D003811 ORTHO05D004470 1.9e-14 84.0 258 33.3
Eucgr.C02219 Eucalyptus grandis HOM05D003811 ORTHO05D004470 4.3e-14 82.8 184 38.6
BcaC09g50723 Brassica carinata HOM05D003811 ORTHO05D004470 5.6e-14 82.4 261 32.6
C01p21610 Brassica napus HOM05D003811 ORTHO05D004470 5.6e-14 82.4 261 32.6
BolC1t02080H Brassica oleracea HOM05D003811 ORTHO05D004470 5.6e-14 82.4 261 32.6
AL7G27010 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 1.3e-13 81.3 274 33.2
BcaC03g14176 Brassica carinata HOM05D003811 ORTHO05D004470 2.1e-13 80.5 256 32.0
C02p14510 Brassica napus HOM05D003811 ORTHO05D004470 2.1e-13 80.5 256 32.0
BolC2t07575H Brassica oleracea HOM05D003811 ORTHO05D004470 2.1e-13 80.5 256 32.0
AT4G25990 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 2.8e-13 80.1 278 33.8
Carub.0007s1496 Capsella rubella HOM05D003811 ORTHO05D004470 3.6e-13 79.7 268 31.7
BcaNung03775 Brassica carinata HOM05D003811 ORTHO05D004470 1.4e-12 77.8 260 33.8
BraA03t14705Z Brassica rapa HOM05D003811 ORTHO05D004470 4.0e-12 76.3 259 32.8
SGA_v2.0_scaffold511G52626 Striga asiatica HOM05D003811 ORTHO05D004470 4.0e-12 76.3 204 35.3
HPP92_010287 Vanilla planifolia HOM05D003811 ORTHO05D004470 4.0e-12 76.3 256 34.8
A01p17250 Brassica napus HOM05D003811 ORTHO05D004470 6.9e-12 75.5 260 31.5
BraA01t01681Z Brassica rapa HOM05D003811 ORTHO05D004470 9.0e-12 75.1 261 31.8
unitig_8.g4051 Utricularia gibba HOM05D003811 ORTHO05D004470 2.6e-11 73.6 112 40.2
CARHR270970 Cardamine hirsuta HOM05D003811 ORTHO05D004470 3.4e-11 73.2 221 33.0
BolC7t45947H Brassica oleracea HOM05D003811 ORTHO05D004470 5.8e-11 72.4 265 30.9
Carub.0008s1769 Capsella rubella HOM05D003811 ORTHO05D004470 5.8e-11 72.4 281 31.3
Zm00001eb232250 Zea mays HOM05D003811 ORTHO05D004470 7.6e-11 72.0 256 29.7
Nn8g40778 Nelumbo nucifera HOM05D003811 ORTHO05D004470 9.9e-11 71.6 185 37.3
unitig_22.g5159 Utricularia gibba HOM05D003811 ORTHO05D004470 1.7e-10 70.9 112 42.0
Lsat_1_v5_gn_5_27801 Lactuca sativa HOM05D003811 ORTHO05D036460 2.2e-10 70.5 82 47.6
Gohir.A05G002200 Gossypium hirsutum HOM05D003811 ORTHO05D004470 2.4e-09 67.0 264 29.9
Dinv41179 Davidia involucrata HOM05D003811 ORTHO05D004470 5.4e-09 65.9 261 28.0
Gorai.009G002400 Gossypium raimondii HOM05D003811 ORTHO05D004470 9.3e-09 65.1 264 29.5
Lsat_1_v5_gn_5_45681 Lactuca sativa HOM05D003811 ORTHO05D036460 9.3e-09 65.1 73 49.3
HPP92_017127 Vanilla planifolia HOM05D003811 ORTHO05D004470 9.3e-09 65.1 184 34.2
Gohir.D05G002600 Gossypium hirsutum HOM05D003811 ORTHO05D004470 1.2e-08 64.7 266 29.3
Zm00001eb208040 Zea mays HOM05D003811 ORTHO05D004470 3.5e-08 63.2 291 30.9
C07p54590 Brassica napus HOM05D003811 ORTHO05D004470 4.6e-08 62.8 265 30.2
SEGI_33443 Sequoiadendron giganteum HOM05D001106 ORTHO05D000910 7.8e-08 62.0 98 41.8
Os02g0148000 Oryza sativa ssp. japonica HOM05D003811 ORTHO05D004470 2.3e-07 60.5 302 29.8
Medtr2g038010 Medicago truncatula HOM05D003811 ORTHO05D004470 1.1e-06 58.2 181 32.6
Phvul.009G236100 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 1.1e-06 58.2 118 36.4
Lsat_1_v5_gn_9_75161 Lactuca sativa HOM05D003811 ORTHO05D036460 1.9e-06 57.4 73 46.6
TPR.G7568 Trifolium pratense HOM05D002228 ORTHO05D002347 2.5e-06 57.0 179 33.0
Lsat_1_v5_gn_6_95500 Lactuca sativa HOM05D003811 ORTHO05D004470 3.3e-06 56.6 148 30.4
Psat1g144040 Pisum sativum HOM05D003811 ORTHO05D004470 9.6e-06 55.1 179 33.5


User provided reference genes

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