Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.7e-82 309.3 154 100.0
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 3.1e-81 305.1 154 98.7
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.6e-80 302.8 154 98.1
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 5.9e-80 300.8 154 96.8
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 1.6e-72 276.2 154 87.0
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 4.7e-69 264.6 148 86.5
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 3.5e-64 248.4 153 77.1
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 4.5e-64 248.1 151 77.5
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 5.9e-64 247.7 152 77.0
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 3.8e-63 245.0 150 78.0
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 3.3e-62 241.9 123 98.4
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 4.2e-62 241.5 147 76.9
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 4.2e-62 241.5 153 75.2
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 7.2e-62 240.7 151 76.8
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 3.6e-61 238.4 149 73.8
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 4.7e-61 238.0 150 75.3
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 4.7e-61 238.0 152 74.3
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 6.1e-61 237.7 153 73.9
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 8.0e-61 237.3 153 73.9
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 8.0e-61 237.3 153 75.2
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 8.0e-61 237.3 149 76.5
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 2.3e-60 235.7 153 73.9
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 2.3e-60 235.7 150 72.7
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 3.0e-60 235.3 154 72.7
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 3.0e-60 235.3 152 75.0
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 4.0e-60 235.0 154 70.8
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 4.0e-60 235.0 152 73.0
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 5.2e-60 234.6 153 73.9
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 6.8e-60 234.2 150 75.3
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 1.2e-59 233.4 152 71.7
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 1.5e-59 233.0 151 70.2
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 3.4e-59 231.9 154 69.5
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 3.4e-59 231.9 151 70.9
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 4.4e-59 231.5 147 76.9
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 4.4e-59 231.5 154 70.8
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 5.7e-59 231.1 150 72.0
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 5.7e-59 231.1 151 72.2
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 9.8e-59 230.3 154 70.8
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 1.7e-58 229.6 151 71.5
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 1.7e-58 229.6 153 69.9
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 3.7e-58 228.4 151 70.9
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 6.3e-58 227.6 149 69.8
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 6.3e-58 227.6 145 75.2
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 8.3e-58 227.3 152 72.4
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 8.3e-58 227.3 150 70.0
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 8.3e-58 227.3 153 69.9
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 1.1e-57 226.9 151 69.5
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.4e-57 226.5 149 73.2
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.4e-57 226.5 149 73.2
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 1.8e-57 226.1 152 68.4
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 2.4e-57 225.7 152 70.4
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 4.1e-57 224.9 153 68.0
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 4.1e-57 224.9 150 68.7
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 4.1e-57 224.9 152 68.4
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 5.4e-57 224.6 149 69.8
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 7.0e-57 224.2 148 69.6
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 7.0e-57 224.2 152 71.1
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 9.2e-57 223.8 153 69.3
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 1.2e-56 223.4 148 72.3
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 1.2e-56 223.4 154 68.8
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 1.6e-56 223.0 152 68.4
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 2.0e-56 222.6 153 69.3
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 2.0e-56 222.6 144 72.2
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 2.0e-56 222.6 153 69.9
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 2.0e-56 222.6 153 69.9
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 4.6e-56 221.5 146 71.2
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 7.8e-56 220.7 152 66.4
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.0e-55 220.3 151 69.5
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 1.7e-55 219.5 149 69.8
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 2.3e-55 219.2 153 68.0
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 2.3e-55 219.2 149 67.8
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 3.9e-55 218.4 152 68.4
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 5.0e-55 218.0 151 68.9
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 6.6e-55 217.6 154 65.6
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 1.9e-54 216.1 149 67.1
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 5.6e-54 214.5 152 65.8
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 7.3e-54 214.2 152 65.1
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 7.3e-54 214.2 153 65.4
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 9.5e-54 213.8 149 66.4
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 2.1e-53 212.6 150 64.0
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 4.7e-53 211.5 149 66.4
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 1.0e-52 210.3 143 69.2
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 4.0e-52 208.4 147 64.6
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 1.2e-51 206.8 138 69.6
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 7.5e-51 204.1 150 65.3
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 9.8e-51 203.8 152 61.8
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 1.7e-50 203.0 153 62.7
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 1.7e-50 203.0 152 63.2
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 2.9e-50 202.2 151 65.6
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 1.1e-49 200.3 148 61.5
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 1.9e-49 199.5 148 64.9
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 5.4e-49 198.0 142 62.0
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 9.2e-49 197.2 148 63.5
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.6e-48 196.4 146 64.4
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 2.7e-48 195.7 146 63.7
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 1.7e-47 193.0 146 63.0
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 3.9e-47 191.8 145 62.8
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 3.9e-47 191.8 150 60.0
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 6.6e-47 191.0 151 58.9
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 1.1e-46 190.3 148 60.1
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 1.9e-46 189.5 150 60.0
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 4.3e-46 188.3 148 59.5
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 5.6e-46 188.0 148 58.8
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 5.6e-46 188.0 150 58.7
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 7.3e-46 187.6 150 58.7
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 7.3e-46 187.6 150 58.7
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 7.3e-46 187.6 148 58.8
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 1.2e-45 186.8 150 61.3
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 1.2e-45 186.8 146 59.6
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 1.6e-45 186.4 150 58.0
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 3.6e-45 185.3 151 57.0
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 4.0e-44 181.8 122 71.3
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 2.2e-42 176.0 142 56.3
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 6.4e-42 174.5 148 58.1
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 7.1e-41 171.0 148 55.4
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 2.3e-39 166.0 131 56.5
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 1.9e-38 162.9 121 65.3
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 2.8e-37 159.1 98 76.5
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 3.7e-34 148.7 137 56.9
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 3.7e-34 148.7 144 47.2
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 4.9e-34 148.3 144 51.4
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 4.9e-34 148.3 143 54.5
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 6.4e-34 147.9 151 45.0
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 9.2e-33 144.1 105 66.7
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 2.7e-32 142.5 145 46.2
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 2.8e-29 132.5 74 83.8
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 2.4e-28 129.4 145 48.3
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 6.8e-28 127.9 97 60.8
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 1.5e-27 126.7 141 47.5
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 4.9e-26 121.7 113 53.1
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 1.1e-25 120.6 142 45.8
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 9.3e-25 117.5 153 44.4
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 3.1e-20 102.4 106 43.4
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 3.4e-19 99.0 85 56.5


User provided reference genes

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