Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 0.0e+00 1119.8 567 100.0
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 0.0e+00 1116.3 567 99.6
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 3.7e-305 1050.8 568 93.1
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 2.0e-282 975.3 507 97.6
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 8.9e-275 949.9 577 84.9
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 1.5e-261 906.0 576 81.4
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 1.7e-254 882.5 575 79.1
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.1e-251 873.2 572 78.7
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 3.8e-249 864.8 571 77.8
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 1.9e-248 862.4 572 78.5
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 7.1e-248 860.5 580 76.2
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 1.2e-247 859.8 570 77.2
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 1.3e-246 856.3 497 85.3
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 3.9e-246 854.7 572 76.2
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 6.7e-246 854.0 573 75.4
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.9e-245 852.4 507 88.2
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 3.7e-244 848.2 506 83.0
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 3.7e-244 848.2 504 83.9
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 2.0e-242 842.4 575 75.7
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.4e-242 841.6 570 75.6
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 5.8e-242 840.9 442 96.8
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 8.4e-241 837.0 571 74.8
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 7.1e-240 833.9 538 78.6
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 6.0e-239 830.9 503 81.5
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 2.5e-237 825.5 575 74.1
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 1.6e-236 822.8 504 81.9
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 2.8e-236 822.0 571 73.9
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 1.4e-235 819.7 564 73.9
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 2.4e-235 818.9 498 80.3
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 1.5e-234 816.2 568 74.8
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 1.4e-232 809.7 503 80.5
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.6e-231 806.2 564 73.9
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.6e-231 806.2 566 71.0
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 4.6e-231 804.7 565 71.7
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 6.0e-231 804.3 489 81.0
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 5.1e-230 801.2 570 71.4
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 1.5e-229 799.7 576 72.2
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 2.5e-229 798.9 571 71.8
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 2.5e-229 798.9 570 70.9
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 3.3e-229 798.5 566 71.6
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 9.7e-229 797.0 571 71.1
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.3e-228 796.6 451 86.9
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 1.6e-228 796.2 508 77.8
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 1.6e-228 796.2 509 77.2
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 2.2e-228 795.8 572 70.8
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 3.7e-228 795.0 502 79.1
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 3.7e-228 795.0 498 79.1
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 4.8e-228 794.7 497 79.9
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 8.2e-228 793.9 557 73.2
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.8e-227 792.7 559 73.0
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 4.1e-227 791.6 571 72.0
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 9.0e-227 790.4 580 69.8
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 9.0e-227 790.4 493 78.7
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 1.5e-226 789.6 574 70.9
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 5.9e-226 787.7 498 78.3
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 1.7e-225 786.2 481 79.8
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 2.5e-224 782.3 547 74.0
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 5.5e-224 781.2 508 76.6
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 9.4e-224 780.4 477 79.5
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 9.4e-224 780.4 471 79.8
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 1.6e-223 779.6 536 72.8
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 2.7e-223 778.9 550 73.1
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 3.6e-223 778.5 491 77.4
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 5.1e-222 774.6 492 77.4
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 1.1e-221 773.5 502 76.1
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 1.1e-221 773.5 502 76.1
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 3.3e-221 771.9 492 78.0
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 3.3e-221 771.9 491 77.4
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 4.3e-221 771.5 507 74.2
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 5.7e-221 771.2 565 70.4
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 5.7e-221 771.2 553 70.2
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 7.4e-221 770.8 492 77.8
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 2.2e-220 769.2 492 77.6
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 3.7e-220 768.5 492 77.4
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 8.2e-220 767.3 551 69.5
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 1.8e-219 766.1 492 76.6
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 6.9e-219 764.2 520 75.0
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 6.9e-219 764.2 571 69.2
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 1.2e-218 763.5 491 75.6
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 1.5e-218 763.1 492 76.2
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 1.0e-217 760.4 559 69.4
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.2e-217 759.2 556 68.9
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 2.9e-217 758.8 556 68.7
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 2.5e-216 755.7 463 79.3
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 9.4e-216 753.8 550 69.6
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.4e-214 750.0 549 69.0
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.6e-213 745.7 503 73.6
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 7.4e-213 744.2 503 73.6
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 4.8e-212 741.5 510 73.7
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 1.1e-211 740.3 543 69.1
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 3.5e-210 735.3 547 69.3
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 5.9e-210 734.6 495 72.1
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 1.1e-208 730.3 555 67.6
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 3.2e-208 728.8 564 67.6
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 2.3e-206 722.6 497 74.8
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 3.9e-206 721.8 569 66.3
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 2.0e-202 709.5 496 70.2
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 5.9e-202 708.0 558 65.8
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 8.8e-198 694.1 568 66.4
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 5.9e-194 681.4 409 79.2
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 7.2e-192 674.5 568 64.3
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 9.4e-192 674.1 486 66.5
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 2.1e-191 672.9 448 77.5
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.1e-191 672.9 486 67.1
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 4.7e-191 671.8 479 72.2
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 4.7e-191 671.8 486 66.9
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 4.0e-190 668.7 541 61.0
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 3.6e-183 645.6 506 64.0
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 7.5e-181 637.9 505 62.2
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 2.1e-175 619.8 461 65.1
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 6.1e-175 618.2 500 63.8
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 5.8e-173 611.7 492 65.4
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 9.8e-165 584.3 472 57.6
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.5e-160 569.7 473 58.6
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 3.3e-160 569.3 473 59.0
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 5.2e-158 562.0 488 58.4
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 3.7e-156 555.8 456 66.2
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 2.2e-148 530.0 382 72.8
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 1.4e-142 510.8 508 51.0
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 4.6e-138 495.7 320 78.1
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 6.9e-134 481.9 334 73.4
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 3.3e-128 463.0 507 48.1
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 1.6e-122 444.1 501 48.7
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 5.4e-78 296.2 226 68.1
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 1.1e-62 245.4 146 81.5
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 1.5e-59 235.0 474 31.4
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 5.2e-41 173.3 115 72.2
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 1.1e-35 155.6 431 26.9
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 8.4e-31 139.4 72 88.9
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 7.8e-29 132.9 64 100.0
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.6e-24 117.9 80 76.2
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 5.8e-16 90.1 491 26.3
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 3.8e-15 87.4 477 23.7
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 6.5e-07 60.1 28 96.4


User provided reference genes

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