Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 9.7e-86 320.1 159 100.0
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.0e-83 312.4 159 97.5
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 2.2e-82 308.9 157 96.8
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.2e-82 308.9 157 96.8
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 2.5e-81 305.4 156 95.5
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 2.0e-78 295.8 156 90.4
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 5.3e-76 287.7 156 91.0
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 1.5e-73 279.6 156 90.4
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 4.2e-73 278.1 156 85.3
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 2.3e-71 272.3 155 85.2
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 3.0e-71 271.9 156 85.3
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 3.0e-71 271.9 156 85.3
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 5.2e-71 271.2 156 83.3
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 2.6e-70 268.9 152 83.6
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 2.6e-70 268.9 156 81.4
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 4.4e-70 268.1 152 85.5
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 5.7e-70 267.7 155 83.9
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 7.5e-70 267.3 155 82.6
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 7.5e-70 267.3 155 82.6
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 1.7e-69 266.2 154 81.2
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.2e-69 265.8 155 81.9
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 2.8e-69 265.4 156 79.5
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 3.7e-69 265.0 156 78.8
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 3.7e-69 265.0 155 80.6
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 4.8e-69 264.6 157 82.2
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 6.3e-69 264.2 154 82.5
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 6.3e-69 264.2 153 84.3
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 8.3e-69 263.8 154 83.1
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.4e-68 263.1 154 82.5
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 1.8e-68 262.7 153 81.7
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.8e-68 262.7 154 82.5
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 2.4e-68 262.3 152 81.6
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 3.1e-68 261.9 156 77.6
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 4.1e-68 261.5 155 81.3
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 4.1e-68 261.5 156 80.8
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 7.0e-68 260.8 154 79.2
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 2.0e-67 259.2 156 78.8
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 2.7e-67 258.8 155 80.0
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 3.5e-67 258.5 155 80.0
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 4.5e-67 258.1 156 78.8
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 5.9e-67 257.7 156 79.5
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 7.7e-67 257.3 152 79.6
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 1.0e-66 256.9 155 80.6
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 1.3e-66 256.5 156 78.2
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.3e-66 256.5 153 79.1
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 1.7e-66 256.1 153 77.8
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 1.7e-66 256.1 153 81.0
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 2.9e-66 255.4 157 79.6
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 5.0e-66 254.6 153 78.4
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 8.5e-66 253.8 156 76.9
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 1.1e-65 253.4 156 75.0
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 1.5e-65 253.1 156 73.1
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 2.5e-65 252.3 156 78.8
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 2.5e-65 252.3 156 77.6
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 3.2e-65 251.9 156 75.6
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 4.2e-65 251.5 150 80.7
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 4.2e-65 251.5 156 77.6
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 4.2e-65 251.5 156 77.6
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 5.5e-65 251.1 161 75.8
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 7.2e-65 250.8 157 77.1
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 9.4e-65 250.4 152 78.3
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 9.4e-65 250.4 156 77.6
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.2e-64 250.0 151 80.1
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 1.6e-64 249.6 154 76.0
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 2.1e-64 249.2 150 78.0
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 3.6e-64 248.4 150 77.3
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 3.6e-64 248.4 149 78.5
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 4.7e-64 248.1 156 76.9
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 1.8e-63 246.1 160 75.6
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.8e-63 246.1 151 76.8
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 1.8e-63 246.1 153 77.1
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 2.3e-63 245.7 156 73.7
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 3.0e-63 245.4 152 77.6
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 3.0e-63 245.4 152 75.7
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 5.2e-63 244.6 154 73.4
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 5.2e-63 244.6 156 73.1
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 6.8e-63 244.2 153 75.8
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 6.8e-63 244.2 142 82.4
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 8.8e-63 243.8 180 68.3
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 8.8e-63 243.8 153 75.8
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 3.4e-62 241.9 155 73.5
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.4e-62 241.9 150 77.3
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 7.5e-62 240.7 155 73.5
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.3e-61 240.0 156 76.3
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 1.3e-61 240.0 153 75.8
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.7e-61 239.6 138 82.6
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 2.2e-61 239.2 144 77.1
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 2.8e-61 238.8 156 75.6
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 3.7e-61 238.4 175 69.1
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.7e-61 238.4 155 75.5
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 8.3e-61 237.3 155 75.5
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 1.4e-60 236.5 161 70.8
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 2.4e-60 235.7 141 78.0
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 2.4e-60 235.7 177 67.8
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 7.0e-60 234.2 138 81.2
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.2e-59 233.4 156 73.1
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 1.6e-59 233.0 154 76.0
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 2.0e-59 232.6 137 78.8
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 2.7e-59 232.3 152 72.4
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 6.6e-58 227.6 152 73.0
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 1.1e-57 226.9 157 73.9
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 3.3e-57 225.3 153 71.9
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 3.6e-56 221.9 153 69.9
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 6.1e-56 221.1 152 70.4
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 8.0e-56 220.7 153 70.6
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 5.2e-55 218.0 152 71.1
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 1.2e-54 216.9 142 73.2
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 1.2e-54 216.9 157 68.8
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 1.2e-54 216.9 157 68.8
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 2.9e-53 212.2 154 70.8
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 2.9e-53 212.2 151 69.5
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 2.9e-53 212.2 152 68.4
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 2.9e-53 212.2 151 69.5
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 2.9e-53 212.2 152 68.4
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 3.7e-53 211.8 152 68.4
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 3.7e-53 211.8 152 68.4
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 5.4e-52 208.0 159 64.2
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.5e-51 205.3 112 86.6
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 1.3e-50 203.4 197 53.8
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 2.3e-47 192.6 153 66.7
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 4.0e-47 191.8 112 79.5
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 3.4e-46 188.7 125 71.2
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 5.8e-46 188.0 128 68.0
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 1.9e-44 183.0 153 58.2
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 4.4e-38 161.8 124 65.3
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 1.9e-36 156.4 90 82.2
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 3.2e-36 155.6 150 52.7
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 3.5e-35 152.1 151 50.3
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 4.3e-33 145.2 90 75.6
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 6.4e-29 131.3 83 75.9
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 8.4e-29 131.0 98 64.3
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 1.9e-28 129.8 139 47.5
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 9.6e-25 117.5 77 67.5
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 1.7e-21 106.7 125 46.4
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 3.5e-19 99.0 125 43.2
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.7e-13 80.1 48 77.1
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 1.7e-13 80.1 53 77.4


User provided reference genes

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