Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 0.0e+00 1310.8 666 100.0
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 0.0e+00 1251.9 666 96.1
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 0.0e+00 1111.7 689 83.9
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 0.0e+00 1077.0 677 84.6
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 5.0e-301 1037.3 728 76.9
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 6.1e-291 1003.8 684 75.6
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 1.3e-235 820.1 662 63.4
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 9.6e-228 793.9 632 64.4
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 8.1e-227 790.8 657 62.1
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 3.2e-223 778.9 595 66.2
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 1.1e-220 770.4 669 59.8
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 2.1e-214 749.6 658 60.5
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 1.5e-212 743.4 591 65.0
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 7.4e-212 741.1 584 63.2
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.8e-211 739.2 701 58.1
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 6.3e-211 738.0 650 60.3
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 1.8e-210 736.5 657 58.8
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 6.9e-210 734.6 655 58.3
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 1.0e-208 730.7 606 63.2
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 1.0e-208 730.7 618 59.4
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 4.6e-206 721.8 654 57.3
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 2.3e-205 719.5 611 60.4
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 5.1e-205 718.4 615 59.3
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 3.3e-204 715.7 588 59.9
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 1.4e-202 710.3 608 60.0
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 5.3e-202 708.4 626 58.8
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 6.9e-202 708.0 655 58.5
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 1.2e-201 707.2 619 58.8
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 1.6e-198 696.8 659 56.8
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 2.1e-198 696.4 649 57.5
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 6.1e-198 694.9 481 72.6
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 8.8e-197 691.0 654 56.9
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 5.7e-196 688.3 655 55.7
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 1.3e-195 687.2 639 56.2
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 1.1e-194 684.1 622 57.6
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.4e-191 673.7 513 64.7
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 4.2e-191 672.2 595 56.8
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 9.4e-191 671.0 649 56.2
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 3.6e-190 669.1 530 62.8
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 7.9e-190 667.9 671 53.4
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 3.5e-185 652.5 498 66.3
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 5.0e-184 648.7 608 56.6
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 1.6e-182 643.7 620 55.5
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.0e-181 641.0 317 98.4
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 8.2e-179 631.3 651 51.2
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 1.6e-177 627.1 605 52.7
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 4.5e-177 625.5 651 50.7
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 1.0e-176 624.4 599 52.9
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 1.0e-176 624.4 497 62.4
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.0e-176 624.4 644 53.3
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 5.0e-176 622.1 662 51.4
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 6.5e-176 621.7 586 57.3
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 1.1e-175 620.9 515 61.0
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 9.4e-175 617.8 656 51.5
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 2.4e-170 603.2 474 60.3
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 4.5e-169 599.0 730 47.8
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 1.3e-168 597.4 645 49.5
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 1.3e-168 597.4 685 49.9
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 2.1e-166 590.1 522 60.3
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 8.0e-166 588.2 369 87.0
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 4.4e-164 582.4 676 48.7
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 1.2e-161 574.3 556 53.1
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 2.3e-160 570.1 494 57.5
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 2.9e-160 569.7 551 55.7
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 5.0e-160 568.9 556 52.5
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 5.6e-159 565.5 617 48.8
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 2.8e-158 563.1 582 50.2
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 3.6e-158 562.8 536 56.7
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 2.3e-157 560.1 494 56.9
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 5.2e-157 558.9 581 50.1
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 1.2e-156 557.8 663 45.9
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 2.2e-155 553.5 424 62.7
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 2.0e-153 547.0 584 49.5
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 2.0e-153 547.0 584 49.5
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 1.0e-152 544.7 423 61.7
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 2.5e-151 540.0 382 66.0
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 1.2e-150 537.7 642 45.8
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 2.8e-150 536.6 642 47.0
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 3.6e-150 536.2 511 53.0
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 1.2e-148 531.2 634 47.5
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 9.8e-148 528.1 666 45.9
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 6.4e-147 525.4 414 64.3
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 7.8e-145 518.5 504 55.2
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 8.9e-141 505.0 607 45.5
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 1.2e-140 504.6 583 48.0
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 2.9e-139 500.0 504 50.4
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 6.0e-137 492.3 526 52.5
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 3.1e-133 479.9 573 48.3
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 8.4e-131 471.9 599 43.4
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 9.2e-130 468.4 346 64.5
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 3.9e-128 463.0 597 45.6
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 3.8e-123 446.4 401 59.9
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 9.3e-122 441.8 438 55.3
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 1.3e-118 431.4 650 40.2
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 3.0e-112 410.2 333 59.5
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 1.2e-108 398.3 592 43.4
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 2.6e-108 397.1 589 43.1
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 4.5e-108 396.4 604 40.9
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 5.1e-96 356.3 493 42.8
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 1.5e-95 354.8 237 67.5
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 2.2e-91 340.9 249 62.2
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 4.5e-84 316.6 389 52.7
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 6.3e-62 243.0 222 63.1
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 7.7e-52 209.5 183 63.4
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 1.3e-51 208.8 149 76.5
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.2e-49 202.2 144 76.4
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 4.7e-49 200.3 275 51.6
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 5.7e-47 193.4 166 65.1
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 3.1e-32 144.4 253 31.2
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 6.2e-25 120.2 259 28.2
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 3.1e-24 117.9 153 51.0
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 5.6e-18 97.1 111 55.0
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.8e-14 84.3 59 61.0
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 1.4e-13 82.4 68 61.8
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 1.9e-13 82.0 64 51.6
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.2e-07 62.8 42 64.3


User provided reference genes

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