Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.0e-149 534.6 657 100.0
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 3.1e-130 469.9 232 98.3
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.6e-129 467.6 230 98.3
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.6e-121 441.0 232 93.5
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 3.1e-93 347.1 229 74.7
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 4.2e-82 310.1 230 67.4
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 4.9e-67 260.0 630 75.7
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 6.4e-67 259.6 233 58.4
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 8.4e-67 259.2 230 59.6
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 3.2e-66 257.3 601 85.9
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 1.6e-65 255.0 633 79.1
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 2.1e-65 254.6 197 67.0
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 2.7e-65 254.2 651 74.2
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 4.6e-65 253.4 630 75.2
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 6.0e-65 253.1 674 70.3
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 1.3e-64 251.9 602 77.2
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 1.8e-64 251.5 628 76.9
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 5.1e-64 250.0 630 75.9
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 5.1e-64 250.0 237 56.5
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 8.7e-64 249.2 615 71.9
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 1.6e-62 245.0 634 70.0
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 8.1e-62 242.7 227 54.2
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 6.9e-61 239.6 634 70.8
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 6.9e-61 239.6 634 70.8
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 1.2e-60 238.8 634 70.8
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 2.0e-60 238.0 630 71.7
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 4.5e-60 236.9 630 71.7
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 4.5e-60 236.9 198 60.6
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 2.9e-59 234.2 224 56.7
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 3.8e-59 233.8 118 95.8
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 3.5e-57 227.3 185 57.8
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 3.9e-56 223.8 213 52.6
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 2.5e-55 221.1 213 57.3
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 3.3e-55 220.7 179 57.5
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 4.3e-55 220.3 231 51.1
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 3.4e-52 210.7 220 53.6
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 1.3e-51 208.8 237 50.6
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 4.9e-51 206.8 217 49.8
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 4.9e-51 206.8 604 75.8
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 1.4e-50 205.3 619 75.4
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 7.1e-50 203.0 172 55.2
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 2.7e-49 201.1 610 78.4
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 4.6e-49 200.3 191 54.5
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 1.0e-48 199.1 558 85.5
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 2.3e-48 198.0 193 52.3
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 5.1e-48 196.8 188 55.3
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 8.7e-48 196.1 598 81.3
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 8.7e-48 196.1 654 75.2
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 2.5e-47 194.5 201 51.2
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 2.5e-47 194.5 191 53.4
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 7.4e-47 193.0 557 78.5
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 7.4e-47 193.0 620 77.4
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 7.4e-47 193.0 620 77.4
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 7.4e-47 193.0 213 50.7
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 6.3e-46 189.9 192 53.6
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 8.2e-46 189.5 169 55.6
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 5.3e-45 186.8 185 49.7
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 6.9e-45 186.4 170 53.5
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 9.0e-45 186.0 188 51.1
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 4.5e-44 183.7 618 68.0
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 5.9e-44 183.3 608 80.9
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 2.9e-43 181.0 618 66.0
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 6.5e-43 179.9 184 51.1
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 3.2e-42 177.6 176 55.1
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 4.2e-42 177.2 232 46.6
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 5.5e-42 176.8 145 57.2
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 2.7e-41 174.5 660 62.6
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 6.7e-40 169.9 558 83.3
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 6.7e-40 169.9 180 49.4
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 1.1e-39 169.1 185 50.3
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 2.5e-39 167.9 165 51.5
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 4.3e-39 167.2 180 48.3
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 4.3e-39 167.2 109 94.5
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 9.7e-39 166.0 170 51.8
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 2.8e-38 164.5 615 58.4
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 4.8e-38 163.7 216 44.4
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 1.1e-37 162.5 139 57.6
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 4.1e-37 160.6 199 45.2
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 9.1e-37 159.5 124 61.3
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 1.5e-36 158.7 200 46.5
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 1.5e-36 158.7 107 86.9
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 2.6e-36 157.9 107 86.0
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 4.5e-36 157.1 207 41.1
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 7.7e-36 156.4 107 86.9
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 1.7e-35 155.2 107 71.0
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 2.2e-35 154.8 168 50.0
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 2.9e-35 154.5 155 51.0
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 2.9e-35 154.5 168 50.0
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 1.9e-34 151.8 89 77.5
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 4.2e-34 150.6 614 56.4
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 1.6e-33 148.7 146 51.4
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 1.4e-32 145.6 204 40.2
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 8.8e-32 142.9 180 42.8
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 1.1e-31 142.5 180 46.1
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 5.7e-31 140.2 104 80.8
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 6.3e-30 136.7 191 45.5
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 8.2e-30 136.3 109 59.6
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 1.4e-29 135.6 112 54.5
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 7.2e-26 123.2 88 87.5
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 9.4e-26 122.9 107 59.8
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 3.0e-24 117.9 193 37.3
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 1.1e-23 115.9 84 85.7
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 2.0e-23 115.2 84 85.7
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 4.1e-21 107.5 179 34.1
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 3.6e-17 94.4 71 67.6
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 8.0e-17 93.2 81 49.4
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 9.7e-15 86.3 82 51.2
MD09G1090900 Malus domestica HOM05D007208 ORTHO05D009090 1.2e-12 79.3 51 68.6
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 8.5e-11 73.2 85 64.7
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 9.4e-10 69.7 58 62.1
arahy.Tifrunner.gnm1.ann1.APG80P Arachis hypogaea HOM05D007208 ORTHO05D009090 3.0e-08 64.7 58 81.0
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 1.5e-07 62.4 193 24.9
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 1.5e-07 62.4 118 29.7
THA.LOC104800801 Tarenaya hassleriana HOM05D007202 ORTHO05D009125 2.0e-07 62.0 127 32.3
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 2.6e-07 61.6 117 35.0
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 1.7e-06 58.9 143 30.8
TWI53G0827 Tripterygium wilfordii HOM05D007202 ORTHO05D009125 1.7e-06 58.9 99 33.3
HPP92_009567 Vanilla planifolia HOM05D003210 ORTHO05D000001 2.2e-06 58.5 137 30.7
DCAR_009247 Daucus carota HOM05D006895 ORTHO05D008605 2.8e-06 58.2 120 31.7
PSO541G3269 Papaver somniferum HOM05D003210 ORTHO05D000001 2.8e-06 58.2 142 28.9
ClCG01G011340 Citrullus lanatus HOM05D007202 ORTHO05D009125 3.7e-06 57.8 98 31.6
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 3.7e-06 57.8 170 27.1
AUR62017720 Chenopodium quinoa HOM05D007202 ORTHO05D009125 4.8e-06 57.4 159 28.9
Rhsim09G0070400 Rhododendron simsii HOM05D007202 ORTHO05D009125 4.8e-06 57.4 193 30.1
arahy.Tifrunner.gnm1.ann1.I3T0B4 Arachis hypogaea HOM05D006174 ORTHO05D007987 6.3e-06 57.0 183 26.8
Ciclev10010964m.g Citrus clementina HOM05D006596 ORTHO05D008497 6.3e-06 57.0 151 25.2
Cc02_g24050 Coffea canephora HOM05D006740 ORTHO05D008571 6.3e-06 57.0 145 25.5
PSO675G6229 Papaver somniferum HOM05D003210 ORTHO05D000001 6.3e-06 57.0 142 30.3
Phvul.002G180100 Phaseolus vulgaris HOM05D006740 ORTHO05D008571 6.3e-06 57.0 177 27.1
Ciclev10030697m.g Citrus clementina HOM05D007202 ORTHO05D009125 8.3e-06 56.6 123 30.9
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 8.3e-06 56.6 110 30.9
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 8.3e-06 56.6 134 29.1
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 8.3e-06 56.6 215 27.0
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 8.3e-06 56.6 207 24.2
vmacro08165 Vaccinium macrocarpon HOM05D007202 ORTHO05D009125 8.3e-06 56.6 123 31.7


User provided reference genes

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