Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 4.8e-123 444.5 224 100.0
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 4.4e-108 394.8 229 89.1
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 2.6e-92 342.4 176 98.3
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 5.7e-92 341.3 176 97.7
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 1.4e-85 320.1 176 90.9
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 6.6e-80 301.2 168 91.1
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 1.5e-79 300.1 175 84.6
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 9.5e-79 297.4 172 86.0
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 2.3e-72 276.2 173 79.2
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 1.9e-71 273.1 176 74.4
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 4.3e-71 271.9 169 78.1
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 5.6e-71 271.6 173 77.5
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.3e-71 271.2 170 77.6
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 7.3e-71 271.2 170 77.6
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 9.5e-71 270.8 174 78.2
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 2.8e-70 269.2 198 71.2
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 2.8e-70 269.2 167 78.4
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 2.8e-70 269.2 172 75.6
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.8e-70 269.2 174 75.3
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 3.6e-70 268.9 174 79.3
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 8.1e-70 267.7 172 75.0
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.3e-69 266.2 170 77.1
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 2.3e-69 266.2 172 75.0
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 4.0e-69 265.4 174 74.7
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 5.2e-69 265.0 169 78.1
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 6.8e-69 264.6 168 76.2
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.2e-68 263.8 170 77.1
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 1.5e-68 263.5 168 76.8
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 1.5e-68 263.5 174 75.3
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 1.5e-68 263.5 174 75.9
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 2.0e-68 263.1 174 73.0
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 3.4e-68 262.3 174 74.7
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 4.4e-68 261.9 176 72.7
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 4.4e-68 261.9 170 73.5
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 5.8e-68 261.5 165 75.8
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 5.8e-68 261.5 172 75.6
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 5.8e-68 261.5 171 74.3
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 7.5e-68 261.2 174 76.4
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 9.8e-68 260.8 174 73.6
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.7e-67 260.0 169 76.3
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 6.4e-67 258.1 174 73.6
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 1.9e-66 256.5 168 75.0
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 3.2e-66 255.8 174 72.4
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 3.2e-66 255.8 168 75.0
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 3.2e-66 255.8 171 72.5
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 4.1e-66 255.4 168 74.4
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 5.4e-66 255.0 168 74.4
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 7.1e-66 254.6 167 74.3
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 9.2e-66 254.2 167 74.3
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 1.6e-65 253.4 172 73.8
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.6e-65 253.4 173 71.7
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.1e-65 253.1 176 68.8
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 6.0e-65 251.5 166 74.1
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.3e-64 250.4 173 72.3
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 1.7e-64 250.0 176 71.6
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 3.9e-64 248.8 169 72.2
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 6.6e-64 248.1 172 73.3
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 8.6e-64 247.7 166 72.9
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 8.6e-64 247.7 172 72.1
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.1e-63 247.3 166 73.5
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.5e-63 246.9 173 71.7
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.9e-63 246.5 171 70.8
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 2.5e-63 246.1 168 75.0
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 4.3e-63 245.4 170 71.2
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 4.3e-63 245.4 167 72.5
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 4.3e-63 245.4 172 70.9
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 5.6e-63 245.0 163 75.5
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 7.3e-63 244.6 166 72.9
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 9.5e-63 244.2 172 70.3
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 1.2e-62 243.8 168 70.8
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 2.1e-62 243.0 171 72.5
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 2.8e-62 242.7 166 71.7
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 4.7e-62 241.9 166 71.7
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 6.2e-62 241.5 167 71.3
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 6.2e-62 241.5 169 68.6
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 1.4e-61 240.4 166 71.7
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.4e-61 240.4 163 72.4
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.4e-61 240.4 167 70.7
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.8e-61 240.0 167 70.7
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 3.1e-61 239.2 163 71.2
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 4.0e-61 238.8 166 70.5
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 8.9e-61 237.7 172 72.1
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 2.0e-60 236.5 174 69.0
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 3.4e-60 235.7 174 67.8
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 9.9e-60 234.2 149 75.2
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.3e-59 233.8 176 67.6
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.7e-59 233.4 168 67.9
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 1.7e-59 233.4 159 74.2
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.9e-59 232.6 147 78.9
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.7e-59 232.3 168 69.6
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 3.7e-59 232.3 173 67.1
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 4.9e-59 231.9 146 80.8
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 6.4e-59 231.5 161 68.9
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 8.4e-59 231.1 156 73.1
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 8.4e-59 231.1 166 69.9
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.9e-58 229.9 160 69.4
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 5.4e-58 228.4 149 77.2
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 5.4e-58 228.4 167 66.5
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 7.1e-58 228.0 147 76.2
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 9.2e-58 227.6 151 73.5
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 4.6e-57 225.3 147 74.8
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.2e-54 217.2 142 73.2
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 1.6e-54 216.9 147 74.1
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.6e-54 216.9 146 70.5
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 1.4e-53 213.8 142 73.9
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 3.1e-53 212.6 168 65.5
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 8.9e-53 211.1 145 71.7
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 7.6e-52 208.0 147 71.4
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 3.8e-51 205.7 163 61.3
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 6.4e-51 204.9 166 60.8
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 8.4e-51 204.5 167 60.5
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.4e-50 203.8 173 60.7
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 4.2e-50 202.2 169 62.1
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 5.4e-50 201.8 170 57.1
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 7.1e-50 201.4 149 67.1
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.3e-48 197.2 164 63.4
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.1e-47 194.1 167 61.1
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.9e-47 193.4 147 63.9
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 5.6e-47 191.8 167 58.7
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.6e-46 190.3 165 61.2
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.6e-46 190.3 142 66.9
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 1.8e-45 186.8 165 55.2
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.2e-44 184.1 170 54.1
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 7.6e-44 181.4 125 71.2
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 7.6e-44 181.4 176 54.5
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 1.4e-42 177.2 110 79.1
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 5.6e-39 165.2 112 74.1
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.3e-38 164.1 166 49.4
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 9.0e-37 157.9 115 66.1
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 1.7e-35 153.7 93 80.6
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 4.9e-35 152.1 168 51.8
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 4.8e-30 135.6 108 59.3
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 2.2e-27 126.7 149 51.7
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.8e-21 107.1 87 65.5
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 1.2e-12 77.8 60 63.3
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.7e-06 57.4 173 26.6
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 1.7e-06 57.4 38 63.2
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 3.7e-06 56.2 33 84.8
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 4.8e-06 55.8 171 26.3
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 6.3e-06 55.5 119 30.3


User provided reference genes

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