Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 2220.3 1150 100.0
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 2069.7 1123 96.1
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 0.0e+00 1978.0 1064 96.5
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1959.1 1151 88.6
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1849.3 1051 93.1
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1721.4 953 93.8
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1622.8 1161 73.2
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1562.7 1151 71.9
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1321.2 1154 60.8
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1305.4 1149 60.7
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1270.4 1153 59.4
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1265.4 1226 57.5
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1262.7 1151 59.0
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1255.0 1155 57.9
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1252.7 1168 58.7
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1241.9 1151 58.6
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1231.9 1151 58.7
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1228.8 1155 58.2
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1186.0 1148 55.7
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1181.0 1154 56.1
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1174.5 1154 56.5
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1172.9 1151 55.6
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1165.2 1156 55.4
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1148.3 1155 54.5
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1144.0 1151 53.8
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1140.6 1159 54.2
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1138.6 1154 54.5
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1135.2 1154 52.3
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1126.7 1213 51.4
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1125.9 1153 53.3
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1125.9 1153 52.8
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1124.4 1146 54.3
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1122.8 1152 53.2
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1120.5 1150 54.2
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1115.9 1152 52.9
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1113.6 1156 52.4
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1110.5 1150 53.7
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1100.9 1159 52.8
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1099.7 1150 52.8
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1097.0 1150 52.2
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1082.8 1153 51.9
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1075.8 1146 51.6
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 3.9e-311 1071.6 1146 51.7
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 1.7e-309 1066.2 1113 52.7
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 6.6e-309 1064.3 1151 50.0
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 4.7e-307 1058.1 1105 53.3
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 3.1e-306 1055.4 1147 49.6
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 3.7e-304 1048.5 1149 51.6
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 4.1e-303 1045.0 1154 50.8
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 4.3e-300 1035.0 1105 51.2
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 1.8e-298 1029.6 1151 49.3
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 5.2e-298 1028.1 1151 49.3
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 8.3e-296 1020.8 1146 49.0
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.4e-295 1020.0 1156 48.7
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 3.2e-295 1018.8 1228 48.0
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 5.4e-295 1018.1 1146 49.2
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 2.3e-293 1012.7 1154 50.3
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 5.6e-292 1008.1 1158 49.1
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 5.4e-287 991.5 1155 47.6
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 3.5e-286 988.8 1154 48.8
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 4.0e-282 975.3 1020 51.8
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 6.9e-282 974.5 1132 47.6
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 8.4e-280 967.6 1151 47.4
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 1.4e-279 966.8 1099 50.2
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.4e-279 966.8 1149 47.7
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 4.2e-279 965.3 1146 48.2
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.9e-276 956.4 1151 47.0
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 1.3e-275 953.7 1145 47.2
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.2e-275 951.4 1149 47.5
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 1.8e-274 949.9 1148 46.6
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 1.9e-271 939.9 1148 47.1
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 4.2e-271 938.7 1148 46.7
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 2.7e-270 936.0 1149 47.0
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 4.6e-270 935.3 1149 47.1
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 4.6e-270 935.3 1152 46.7
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 2.3e-269 932.9 1148 46.9
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 1.2e-262 910.6 1097 47.7
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.6e-262 910.2 1150 44.9
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 1.8e-261 906.7 1153 45.2
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.9e-260 903.3 1151 45.1
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 1.9e-255 886.7 1171 44.8
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 7.9e-254 881.3 1146 44.5
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 1.8e-250 870.2 1037 47.3
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 2.6e-249 866.3 1071 46.4
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 4.6e-246 855.5 1143 44.0
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 1.4e-242 844.0 1106 43.3
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.2e-239 832.4 1167 42.2
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 9.1e-234 814.7 1151 41.5
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 4.2e-231 805.8 1161 41.5
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 1.2e-230 804.3 1070 42.8
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 6.1e-230 802.0 935 48.2
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.1e-226 791.2 1143 41.6
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 6.1e-222 775.4 1155 41.6
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 4.2e-207 726.1 910 45.5
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.8e-166 590.5 1052 38.3
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 9.3e-138 495.7 1197 31.4
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 2.3e-136 491.1 655 43.8
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 1.5e-124 451.8 1201 30.1
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.8e-118 430.3 445 54.4
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 3.0e-112 411.0 510 45.5
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 5.7e-111 406.8 695 36.8
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.1e-109 401.0 529 42.7
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.3e-109 400.2 437 51.0
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.0e-104 384.4 441 51.9
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.8e-102 377.1 337 57.6
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 2.0e-95 355.1 1152 27.6
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 3.3e-90 337.8 438 45.9
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 5.4e-85 320.5 233 68.2
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 5.2e-72 277.3 232 62.5
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.4e-61 242.7 323 48.0
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.4e-61 240.7 199 63.8
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 2.1e-57 228.8 315 45.7
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 4.7e-57 227.6 269 49.8
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 5.2e-56 224.2 1302 23.6
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 2.6e-55 221.9 154 67.5
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.7e-51 209.1 180 59.4
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 8.1e-49 200.3 226 49.1
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 2.4e-40 172.2 194 51.0
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.9e-38 164.5 159 52.8
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.1e-36 159.1 118 68.6
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 3.9e-35 154.8 173 47.4
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 4.2e-29 134.8 123 56.1
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.9e-26 125.9 131 53.4
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 7.4e-26 124.0 96 66.7
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.1e-25 122.5 96 64.6
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.1e-25 122.5 96 64.6
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 6.3e-25 120.9 160 43.1
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 1.1e-24 120.2 147 48.3
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 1.1e-24 120.2 147 48.3
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 1.8e-24 119.4 284 32.4
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 2.4e-24 119.0 177 41.8
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.3e-24 117.9 120 51.7
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.0e-22 113.6 115 52.2
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 8.4e-22 110.5 121 51.2
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 6.1e-20 104.4 93 63.4
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 3.9e-19 101.7 1316 21.2
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 2.2e-17 95.9 75 62.7
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 1.1e-16 93.6 128 40.6
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 5.3e-16 91.3 64 54.7
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 2.6e-15 89.0 90 50.0
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 5.0e-14 84.7 172 32.0
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 2.5e-13 82.4 55 70.9
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 6.1e-12 77.8 57 66.7
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 1.8e-11 76.3 73 60.3
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 6.7e-11 74.3 90 47.8
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.5e-10 73.2 92 43.5
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 1.5e-10 73.2 102 46.1
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.4e-08 65.9 64 48.4
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 9.1e-08 63.9 68 45.6
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 1.3e-06 60.1 48 56.2


User provided reference genes

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