Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.9e-64 248.1 133 100.0
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.9e-64 248.1 133 100.0
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.9e-64 248.1 133 100.0
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 1.4e-61 239.6 131 97.7
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.0e-60 235.7 133 90.2
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 2.3e-56 222.2 133 82.0
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.9e-43 178.7 93 96.8
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 4.8e-30 134.8 138 57.2
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 7.0e-29 131.0 139 56.1
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 3.2e-26 122.1 138 54.3
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 2.0e-20 102.8 126 51.6
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 2.9e-19 99.0 112 56.2
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 4.2e-18 95.1 112 53.6
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 5.5e-18 94.7 104 63.5
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 2.3e-16 89.4 131 48.1
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 2.6e-15 85.9 128 44.5
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 4.4e-15 85.1 110 49.1
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 3.7e-14 82.0 129 45.7
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 8.3e-14 80.9 92 53.3
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 1.1e-13 80.5 105 48.6
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 2.4e-13 79.3 95 53.7
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 7.0e-13 77.8 102 46.1
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 7.0e-13 77.8 84 56.0
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 1.2e-12 77.0 94 51.1
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 2.0e-12 76.3 110 47.3
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 2.0e-12 76.3 89 53.9
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 2.7e-12 75.9 51 74.5
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 2.7e-12 75.9 81 56.8
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 3.5e-12 75.5 91 52.7
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 4.5e-12 75.1 91 52.7
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 5.9e-12 74.7 97 46.4
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 1.7e-11 73.2 91 52.7
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 1.7e-11 73.2 86 48.8
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 1.7e-11 73.2 62 67.7
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 3.9e-11 72.0 94 50.0
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 3.9e-11 72.0 88 50.0
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 5.0e-11 71.6 109 43.1
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 6.6e-11 71.2 89 49.4
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 8.6e-11 70.9 100 60.0
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 8.6e-11 70.9 71 69.0
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 1.1e-10 70.5 85 61.2
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 1.1e-10 70.5 88 55.7
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 1.5e-10 70.1 50 68.0
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 1.9e-10 69.7 88 48.9
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 2.5e-10 69.3 104 48.1
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 3.3e-10 68.9 93 57.0
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 4.3e-10 68.6 84 58.3
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 5.6e-10 68.2 85 60.0
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 5.6e-10 68.2 93 50.5
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 5.6e-10 68.2 95 46.3
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 5.6e-10 68.2 94 44.7
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 9.5e-10 67.4 85 62.4
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 9.5e-10 67.4 85 58.8
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 9.5e-10 67.4 92 52.2
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 1.2e-09 67.0 44 75.0
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.2e-09 67.0 99 48.5
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 1.6e-09 66.6 90 47.8
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 2.1e-09 66.2 85 60.0
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 2.1e-09 66.2 85 60.0
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 2.1e-09 66.2 85 60.0
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 2.8e-09 65.9 44 75.0
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 2.8e-09 65.9 44 75.0
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 4.7e-09 65.1 85 49.4
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 4.7e-09 65.1 85 49.4
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 4.7e-09 65.1 85 49.4
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 4.7e-09 65.1 85 60.0
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 4.7e-09 65.1 87 48.3
AL6G38400 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 8.0e-09 64.3 84 56.0
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 8.0e-09 64.3 69 66.7
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 1.0e-08 63.9 77 59.7
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 2.3e-08 62.8 103 40.8
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 2.3e-08 62.8 93 45.2
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 2.3e-08 62.8 84 54.8
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 2.3e-08 62.8 87 47.1
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 3.1e-08 62.4 94 45.7
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 5.2e-08 61.6 84 57.1
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 5.2e-08 61.6 72 47.2
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 6.8e-08 61.2 84 54.8
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 8.9e-08 60.8 64 57.8
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 2.6e-07 59.3 85 57.6
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 2.6e-07 59.3 68 64.7
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 3.4e-07 58.9 74 47.3
CARHR186980 Cardamine hirsuta HOM05D007325 ORTHO05D009251 4.4e-07 58.5 109 47.7
Sp2g21390 Schrenkiella parvula HOM05D007325 ORTHO05D009251 7.5e-07 57.8 84 52.4
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 1.7e-06 56.6 78 52.6
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.7e-06 56.6 44 61.4
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 2.2e-06 56.2 107 40.2
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 2.2e-06 56.2 80 50.0
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 4.9e-06 55.1 81 44.4
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 4.9e-06 55.1 76 51.3
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 6.4e-06 54.7 95 44.2
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 8.3e-06 54.3 46 63.0
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 8.3e-06 54.3 91 41.8


User provided reference genes

Program Settings