Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 9.0e-102 373.6 193 100.0
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 3.3e-88 328.6 193 90.2
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 2.1e-87 325.9 193 89.6
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 2.7e-82 308.9 183 89.6
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 3.5e-82 308.5 193 84.5
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 5.0e-76 288.1 189 80.4
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 1.6e-74 283.1 186 79.0
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 1.0e-68 263.8 186 73.7
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 7.2e-67 257.7 189 67.7
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 1.2e-66 256.9 188 71.8
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 1.0e-65 253.8 185 71.4
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.9e-65 251.9 189 66.7
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 1.1e-64 250.4 188 69.7
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 1.5e-64 250.0 191 67.0
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 3.3e-64 248.8 189 69.3
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 2.2e-63 246.1 191 66.0
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 2.2e-63 246.1 191 65.4
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.7e-63 245.4 196 64.3
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 4.8e-63 245.0 185 67.6
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 6.3e-63 244.6 191 64.9
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 6.3e-63 244.6 185 67.0
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 8.2e-63 244.2 185 67.6
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 1.1e-62 243.8 191 66.0
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 1.4e-62 243.4 186 67.2
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 2.4e-62 242.7 182 68.1
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 4.1e-62 241.9 182 67.6
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 1.2e-61 240.4 185 65.9
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 1.5e-61 240.0 181 68.0
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 2.0e-61 239.6 185 66.5
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 2.6e-61 239.2 186 67.2
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 2.6e-61 239.2 185 65.4
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 2.6e-61 239.2 186 67.2
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 2.6e-61 239.2 190 64.7
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 4.5e-61 238.4 199 63.3
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 4.5e-61 238.4 189 64.6
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 1.3e-60 236.9 189 64.6
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 1.3e-60 236.9 189 63.0
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 2.9e-60 235.7 189 63.5
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 5.0e-60 235.0 185 62.7
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 6.5e-60 234.6 183 65.6
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 1.1e-59 233.8 183 65.0
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.9e-59 233.0 188 64.9
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 5.5e-59 231.5 183 68.3
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 1.6e-58 229.9 190 63.2
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 1.6e-58 229.9 189 64.0
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 3.6e-58 228.8 185 64.9
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 2.3e-57 226.1 189 60.3
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 2.3e-57 226.1 189 60.3
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 3.9e-57 225.3 189 59.8
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 3.9e-57 225.3 181 64.6
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 5.2e-57 224.9 186 59.7
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 8.8e-57 224.2 189 59.8
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 8.8e-57 224.2 189 59.8
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 1.1e-56 223.8 189 59.8
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 2.0e-56 223.0 186 64.5
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 3.3e-56 222.2 189 59.8
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 9.7e-56 220.7 189 60.8
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 1.7e-55 219.9 184 62.5
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 2.8e-55 219.2 186 59.7
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 3.7e-55 218.8 252 52.4
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 4.8e-55 218.4 189 59.3
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 6.3e-55 218.0 189 58.7
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 1.1e-54 217.2 189 58.2
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 1.4e-54 216.9 177 64.4
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 1.8e-54 216.5 177 62.1
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 3.1e-54 215.7 189 58.2
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 3.1e-54 215.7 177 63.8
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 4.1e-54 215.3 184 60.3
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 5.3e-54 214.9 192 58.9
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.2e-53 213.8 191 58.6
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 2.0e-53 213.0 178 61.2
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 2.6e-53 212.6 181 59.7
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 5.0e-52 208.4 180 58.9
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 1.1e-51 207.2 151 71.5
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 1.5e-51 206.8 150 73.3
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 2.5e-51 206.1 189 55.6
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 3.2e-51 205.7 192 57.8
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 5.5e-51 204.9 159 67.9
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 5.5e-51 204.9 164 62.8
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 2.1e-50 203.0 178 61.8
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 6.1e-50 201.4 178 60.1
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 1.8e-49 199.9 175 58.3
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 2.3e-49 199.5 164 64.0
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 2.3e-49 199.5 179 60.3
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 4.0e-49 198.7 222 50.9
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 8.8e-49 197.6 191 56.5
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 3.1e-46 189.1 152 65.1
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 4.1e-46 188.7 162 62.3
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 3.5e-45 185.7 152 60.5
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 5.9e-45 184.9 147 63.3
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 1.0e-44 184.1 189 55.0
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 3.8e-44 182.2 178 51.7
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 3.6e-42 175.6 129 68.2
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 6.1e-42 174.9 126 66.7
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 8.0e-42 174.5 155 60.6
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 1.4e-41 173.7 213 46.9
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 3.4e-40 169.1 117 72.6
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 5.9e-37 158.3 177 46.3
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.1e-35 154.1 180 45.0
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 9.5e-35 151.0 180 42.8
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 5.7e-32 141.7 148 55.4
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 7.5e-32 141.4 147 50.3
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 5.0e-28 128.6 180 40.6
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 2.5e-27 126.3 70 94.3
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 8.0e-26 121.3 122 51.6
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 4.9e-23 112.1 88 61.4
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 5.2e-17 92.0 53 86.8
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 2.5e-11 73.2 50 78.0
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.2e-08 64.3 54 61.1
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 2.6e-08 63.2 165 27.3
Medtr1g051110 Medicago truncatula HOM05D001420 ORTHO05D009292 9.2e-06 54.7 73 45.2


User provided reference genes

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