Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.6e-30 135.6 73 100.0
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.6e-30 135.6 73 100.0
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 3.5e-30 134.4 73 98.6
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 1.0e-29 132.9 73 98.6
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.3e-29 132.5 73 97.3
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 5.0e-29 130.6 73 97.3
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 3.4e-25 117.9 75 92.0
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 7.5e-25 116.7 75 80.0
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 4.9e-24 114.0 75 88.0
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 1.1e-23 112.8 75 89.3
FvH4_6g39682 Fragaria vesca HOM05D002385 ORTHO05D002245 4.5e-22 107.5 63 85.7
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 1.0e-21 106.3 75 85.3
FAN02G1107 Fragaria x ananassa HOM05D002385 ORTHO05D002245 8.6e-21 103.2 61 88.5
FAN05G0132 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.5e-20 99.8 61 86.9
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 1.0e-18 96.3 73 76.7
FvH4_6g39640 Fragaria vesca HOM05D002385 ORTHO05D002245 8.9e-18 93.2 61 80.3
FAN14G3978 Fragaria x ananassa HOM05D002385 ORTHO05D002245 8.9e-18 93.2 61 80.3
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 2.4e-15 85.1 74 75.7
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 3.2e-15 84.7 57 73.7
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 4.1e-15 84.3 74 64.9
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 7.0e-15 83.6 74 73.0
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.7e-14 81.6 75 72.0
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 1.0e-13 79.7 82 67.1
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 1.7e-13 79.0 78 67.9
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 2.3e-13 78.6 75 68.0
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 5.0e-13 77.4 74 68.9
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.0e-13 77.4 67 67.2
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.1e-12 76.3 60 71.7
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.5e-12 75.9 71 66.2
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 1.9e-12 75.5 76 61.8
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 3.3e-12 74.7 84 65.5
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 4.3e-12 74.3 63 68.3
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 5.6e-12 73.9 73 68.5
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 9.5e-12 73.2 67 67.2
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.2e-11 72.8 72 51.4
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 1.6e-11 72.4 65 69.2
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 2.1e-11 72.0 68 64.7
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.8e-11 71.6 61 70.5
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 2.8e-11 71.6 61 70.5
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 2.8e-11 71.6 54 75.9
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 4.7e-11 70.9 73 60.3
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 4.7e-11 70.9 72 63.9
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 4.7e-11 70.9 72 63.9
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 8.0e-11 70.1 71 59.2
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 8.0e-11 70.1 71 59.2
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 8.0e-11 70.1 63 69.8
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 8.0e-11 70.1 66 63.6
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 8.0e-11 70.1 73 58.9
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.0e-10 69.7 71 60.6
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 1.0e-10 69.7 73 67.1
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 1.0e-10 69.7 74 59.5
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 1.0e-10 69.7 61 68.9
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 1.0e-10 69.7 80 61.2
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.4e-10 69.3 71 60.6
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 1.4e-10 69.3 73 58.9
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 1.4e-10 69.3 73 58.9
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.8e-10 68.9 72 56.9
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 2.3e-10 68.6 71 56.3
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 2.3e-10 68.6 56 71.4
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 2.3e-10 68.6 56 71.4
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 3.1e-10 68.2 71 54.9
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 3.1e-10 68.2 71 54.9
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 3.1e-10 68.2 74 62.2
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 4.0e-10 67.8 68 66.2
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 4.0e-10 67.8 68 66.2
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.0e-10 67.8 55 72.7
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 4.0e-10 67.8 73 65.8
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 5.2e-10 67.4 56 62.5
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 5.2e-10 67.4 71 56.3
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 6.8e-10 67.0 71 56.3
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 6.8e-10 67.0 71 56.3
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 6.8e-10 67.0 71 54.9
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 6.8e-10 67.0 73 57.5
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 8.9e-10 66.6 61 59.0
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 8.9e-10 66.6 73 57.5
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 8.9e-10 66.6 59 71.2
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 8.9e-10 66.6 63 66.7
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 1.2e-09 66.2 71 53.5
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 1.2e-09 66.2 77 62.3
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 1.2e-09 66.2 65 63.1
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 1.2e-09 66.2 71 64.8
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.2e-09 66.2 71 56.3
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.5e-09 65.9 75 54.7
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.5e-09 65.9 70 57.1
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 2.0e-09 65.5 71 56.3
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 2.0e-09 65.5 71 56.3
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 2.0e-09 65.5 71 56.3
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 2.0e-09 65.5 64 60.9
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 2.0e-09 65.5 56 67.9
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 2.0e-09 65.5 76 59.2
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.0e-09 65.5 77 59.7
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.0e-09 65.5 77 59.7
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.6e-09 65.1 71 54.9
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 2.6e-09 65.1 71 60.6
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 2.6e-09 65.1 66 65.2
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 3.4e-09 64.7 73 54.8
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 3.4e-09 64.7 73 58.9
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 3.4e-09 64.7 61 63.9
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 4.4e-09 64.3 62 66.1
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.8e-09 63.9 64 62.5
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.8e-09 63.9 64 62.5
FAN23G2683 Fragaria x ananassa HOM05D002385 ORTHO05D002245 5.8e-09 63.9 62 62.9
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 7.5e-09 63.5 65 63.1
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 7.5e-09 63.5 71 60.6
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 9.8e-09 63.2 72 47.2
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 9.8e-09 63.2 56 62.5
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 9.8e-09 63.2 70 57.1
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 9.8e-09 63.2 56 64.3
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.3e-08 62.8 71 52.1
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 1.3e-08 62.8 73 53.4
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 1.3e-08 62.8 61 62.3
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 1.3e-08 62.8 72 62.5
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 1.3e-08 62.8 70 61.4
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 1.3e-08 62.8 67 49.3
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.3e-08 62.8 61 63.9
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 1.7e-08 62.4 57 66.7
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.7e-08 62.4 64 60.9
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.7e-08 62.4 67 53.7
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.7e-08 62.4 67 53.7
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 2.2e-08 62.0 56 66.1
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 2.2e-08 62.0 56 60.7
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 2.2e-08 62.0 74 51.4
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 2.2e-08 62.0 78 57.7
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 2.2e-08 62.0 49 65.3
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 2.2e-08 62.0 72 56.9
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 2.2e-08 62.0 72 51.4
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 2.2e-08 62.0 75 53.3
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.9e-08 61.6 73 54.8
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 2.9e-08 61.6 80 56.2
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 2.9e-08 61.6 66 56.1
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 2.9e-08 61.6 65 53.8
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.9e-08 61.6 70 58.6
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 2.9e-08 61.6 66 56.1
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.9e-08 61.6 70 51.4
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.7e-08 61.2 65 64.6
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 4.9e-08 60.8 66 63.6
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 4.9e-08 60.8 73 56.2
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.9e-08 60.8 55 67.3
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 6.4e-08 60.5 76 46.1
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 6.4e-08 60.5 56 57.1
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 6.4e-08 60.5 56 57.1
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 8.3e-08 60.1 58 51.7
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 8.3e-08 60.1 67 52.2
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 8.3e-08 60.1 47 72.3
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 8.3e-08 60.1 71 59.2
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 8.3e-08 60.1 59 49.2
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.1e-07 59.7 68 63.2
BcaB06g26327 Brassica carinata HOM05D002385 ORTHO05D002245 1.1e-07 59.7 41 70.7
Cfa023570 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.1e-07 59.7 45 66.7
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.1e-07 59.7 48 70.8
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 1.4e-07 59.3 74 52.7
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 1.4e-07 59.3 68 52.9
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.9e-07 58.9 58 69.0
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 1.9e-07 58.9 58 62.1
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.4e-07 58.5 69 58.0
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 2.4e-07 58.5 67 58.2
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 2.4e-07 58.5 54 64.8
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 2.4e-07 58.5 70 57.1
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 3.2e-07 58.2 59 50.8
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 3.2e-07 58.2 67 58.2
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 3.2e-07 58.2 56 64.3
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 4.1e-07 57.8 62 48.4
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 4.1e-07 57.8 60 58.3
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 4.1e-07 57.8 71 54.9
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 4.1e-07 57.8 61 57.4
MD01G1028400 Malus domestica HOM05D002385 ORTHO05D002245 7.0e-07 57.0 51 68.6
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 1.2e-06 56.2 54 59.3
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.2e-06 56.2 73 54.8
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.6e-06 55.8 61 49.2
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 2.0e-06 55.5 60 53.3
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 2.0e-06 55.5 53 64.2
BcaB04g20534 Brassica carinata HOM05D002385 ORTHO05D002245 2.7e-06 55.1 54 59.3
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 2.7e-06 55.1 80 51.2
Aa31LG8G8820 Aethionema arabicum HOM05D002385 ORTHO05D002245 3.5e-06 54.7 44 56.8
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.5e-06 54.7 63 54.0
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 3.5e-06 54.7 63 49.2
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 4.6e-06 54.3 72 48.6
A04p24750 Brassica napus HOM05D002385 ORTHO05D002245 6.0e-06 53.9 55 56.4
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 6.0e-06 53.9 64 56.2
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 6.0e-06 53.9 48 50.0
Cfa021234 Carpinus fangiana HOM05D002385 ORTHO05D002245 7.8e-06 53.5 47 59.6
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 7.8e-06 53.5 49 55.1
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 7.8e-06 53.5 76 44.7


User provided reference genes

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