Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 6.7e-151 537.3 275 100.0
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 4.5e-147 524.6 269 99.3
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 8.5e-138 493.8 269 94.8
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.4e-137 493.0 278 92.8
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 5.5e-137 491.1 269 94.1
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 6.7e-135 484.2 269 90.7
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 4.5e-107 391.7 269 72.5
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 1.7e-106 389.8 274 70.1
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 1.3e-93 347.1 269 63.2
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 4.9e-93 345.1 269 66.2
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 1.4e-92 343.6 264 65.5
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 3.5e-91 339.0 264 64.0
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 7.8e-91 337.8 268 64.9
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 5.0e-90 335.1 264 62.5
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 5.0e-90 335.1 273 61.5
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 8.6e-90 334.3 259 65.3
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 2.5e-89 332.8 266 62.8
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 3.3e-89 332.4 267 62.2
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 7.3e-89 331.3 268 61.6
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 9.5e-89 330.9 262 63.7
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 1.6e-88 330.1 265 63.0
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 1.6e-88 330.1 274 62.0
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 4.7e-88 328.6 267 61.8
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 6.2e-88 328.2 269 62.1
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 1.4e-87 327.0 268 60.1
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.8e-87 326.6 266 62.0
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 2.3e-87 326.2 269 61.7
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 3.1e-87 325.9 262 63.4
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 1.5e-86 323.6 292 56.5
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 2.0e-86 323.2 272 61.0
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 2.6e-86 322.8 267 61.0
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 3.4e-86 322.4 268 61.2
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 4.4e-86 322.0 268 61.2
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 5.8e-86 321.6 275 63.3
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 7.5e-86 321.2 274 60.6
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 1.3e-85 320.5 269 58.7
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 1.4e-84 317.0 268 60.4
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 1.4e-84 317.0 269 61.3
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 1.9e-84 316.6 271 58.7
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 2.4e-84 316.2 265 61.9
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 4.1e-84 315.5 268 58.2
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 4.1e-84 315.5 271 57.9
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 1.6e-83 313.5 268 59.7
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 2.1e-83 313.2 272 59.2
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 2.7e-83 312.8 264 58.7
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 2.7e-83 312.8 271 57.9
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 6.0e-83 311.6 269 61.3
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 7.8e-83 311.2 265 60.0
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 1.3e-82 310.5 272 58.1
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 3.0e-82 309.3 273 57.1
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 5.1e-82 308.5 268 59.3
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 8.6e-82 307.8 274 56.2
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 1.5e-81 307.0 268 59.7
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 1.5e-81 307.0 268 59.7
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 1.5e-81 307.0 267 58.1
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 2.5e-81 306.2 269 59.5
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 2.5e-81 306.2 268 59.3
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 3.3e-81 305.8 271 56.8
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 4.3e-81 305.4 267 59.6
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 7.3e-81 304.7 269 59.5
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 1.6e-80 303.5 268 59.7
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 2.8e-80 302.8 268 59.7
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 2.8e-80 302.8 265 59.2
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 8.1e-80 301.2 269 58.0
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 8.1e-80 301.2 267 58.1
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 1.8e-79 300.1 267 59.6
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 2.6e-78 296.2 274 53.3
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 7.6e-78 294.7 259 57.5
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 9.9e-78 294.3 270 57.0
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 1.7e-77 293.5 252 56.7
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 2.9e-77 292.7 266 54.1
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 2.9e-77 292.7 260 56.9
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 3.7e-77 292.4 264 57.2
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 1.9e-76 290.0 271 56.1
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 1.9e-76 290.0 271 54.6
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 2.1e-75 286.6 268 55.6
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 6.0e-75 285.0 272 54.0
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 3.0e-74 282.7 261 56.3
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 3.9e-74 282.3 241 58.5
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 8.6e-74 281.2 268 53.7
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 1.6e-72 276.9 247 57.9
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 2.8e-72 276.2 246 60.2
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 3.6e-72 275.8 269 53.9
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 4.7e-72 275.4 260 56.2
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 2.6e-70 269.6 181 74.6
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 1.3e-69 267.3 261 55.2
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 1.9e-68 263.5 260 55.0
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 3.2e-68 262.7 268 50.4
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 4.2e-68 262.3 260 53.8
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 4.6e-67 258.8 241 57.3
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 3.2e-60 236.1 265 47.5
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 2.7e-59 233.0 188 60.1
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 7.9e-59 231.5 267 47.9
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 2.0e-54 216.9 186 56.5
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 3.4e-54 216.1 262 45.4
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 6.4e-53 211.8 192 59.4
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 7.1e-52 208.4 261 41.8
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 1.6e-51 207.2 303 41.6
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 1.5e-49 200.7 211 51.7
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 3.1e-47 193.0 184 54.3
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 7.6e-46 188.3 270 43.3
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 1.7e-45 187.2 274 39.8
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 6.5e-45 185.3 178 56.2
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 1.4e-44 184.1 225 46.2
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 3.9e-42 176.0 163 55.8
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 6.7e-42 175.3 253 42.3
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 1.3e-37 161.0 256 41.0
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 4.6e-35 152.5 157 52.2
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 1.0e-34 151.4 162 50.0
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.1e-33 147.9 110 60.9
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 5.7e-33 145.6 268 34.0
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 8.2e-32 141.7 107 60.7
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 2.0e-30 137.1 117 57.3
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 3.4e-30 136.3 154 50.0
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 4.8e-24 115.9 146 44.5
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 3.1e-23 113.2 73 68.5
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 1.2e-22 111.3 119 47.1
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.1e-20 104.8 166 39.2
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 5.5e-20 102.4 179 37.4
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 7.4e-17 92.0 107 44.9
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 1.8e-15 87.4 57 63.2
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.0e-13 81.6 194 34.5
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 2.5e-12 77.0 50 66.0
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 2.5e-12 77.0 121 40.5
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 7.2e-12 75.5 50 64.0
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 3.6e-11 73.2 106 37.7
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 1.8e-07 60.8 37 73.0
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 5.9e-06 55.8 71 42.3


User provided reference genes

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