Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4201 Fragaria x ananassa HOM05D003440 ORTHO05D003953 5.0e-61 237.7 126 100.0
FvH4_6g09130 Fragaria vesca HOM05D003440 ORTHO05D003953 9.8e-57 223.4 132 93.2
FAN09G2448 Fragaria x ananassa HOM05D000046 ORTHO05D000457 2.2e-56 222.2 132 94.7
FAN14G4320 Fragaria x ananassa HOM05D003440 ORTHO05D003953 6.4e-56 220.7 132 92.4
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 7.3e-52 207.2 139 82.0
RcHm_v2.0_Chr3g0459341 Rosa chinensis HOM05D003440 ORTHO05D003953 5.2e-50 201.1 129 86.0
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 1.0e-21 107.1 130 46.9
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 1.3e-19 100.1 121 44.6
MD12G1195900 Malus domestica HOM05D003440 ORTHO05D003953 2.8e-19 99.0 120 49.2
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 3.1e-18 95.5 117 44.4
TWI74G0415 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.2e-17 93.6 114 47.4
MBI15_g11745_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 2.0e-17 92.8 116 44.8
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 2.6e-17 92.4 55 69.1
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.4e-17 92.0 111 45.0
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 3.4e-17 92.0 111 45.0
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.8e-17 91.3 111 44.1
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 7.6e-17 90.9 76 56.6
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 1.7e-16 89.7 104 46.2
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.7e-16 89.7 112 46.4
CANSAT25G3389 Cannabis sativa HOM05D003440 ORTHO05D003953 2.2e-16 89.4 119 48.7
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 1.1e-15 87.0 129 40.3
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 1.4e-15 86.7 74 51.4
Dinv16919 Davidia involucrata HOM05D003440 ORTHO05D003953 1.4e-15 86.7 113 43.4
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 1.4e-15 86.7 114 40.4
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 1.9e-15 86.3 100 45.0
Potri.006G113700 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.9e-15 86.3 121 43.8
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 2.4e-15 85.9 68 54.4
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 7.1e-15 84.3 115 40.9
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 9.3e-15 84.0 73 49.3
PSO384G1065 Papaver somniferum HOM05D003440 ORTHO05D003953 1.6e-14 83.2 143 39.9
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 2.1e-14 82.8 78 48.7
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 2.1e-14 82.8 123 42.3
Aa31LG5G11290 Aethionema arabicum HOM05D000046 ORTHO05D000457 2.7e-14 82.4 73 46.6
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 2.7e-14 82.4 85 49.4
Sp6g41240 Schrenkiella parvula HOM05D003440 ORTHO05D003953 2.7e-14 82.4 56 58.9
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 6.0e-14 81.3 59 61.0
Thhalv10015102m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 1.7e-13 79.7 56 67.9
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 1.7e-13 79.7 60 58.3
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 5.1e-13 78.2 57 59.6
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 5.1e-13 78.2 57 59.6
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 6.6e-13 77.8 62 54.8
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 1.1e-12 77.0 61 55.7
CARHR212370 Cardamine hirsuta HOM05D003440 ORTHO05D003953 1.5e-12 76.6 105 45.7
Lsat_1_v5_gn_8_108200 Lactuca sativa HOM05D003440 ORTHO05D003953 1.9e-12 76.3 92 42.4
HanXRQChr11g0329301 Helianthus annuus HOM05D003440 ORTHO05D003953 2.5e-12 75.9 61 55.7
HanXRQChr11g0329311 Helianthus annuus HOM05D003440 ORTHO05D003953 2.5e-12 75.9 61 55.7
COL.COLO4_20128 Corchorus olitorius HOM05D003440 ORTHO05D003953 5.6e-12 74.7 64 53.1
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 5.6e-12 74.7 80 45.0
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 9.6e-12 73.9 80 45.0
Haze_21225 Corylus avellana HOM05D003440 ORTHO05D003953 1.6e-11 73.2 116 37.9
PGR004G0491 Punica granatum HOM05D003440 ORTHO05D003953 2.1e-11 72.8 120 39.2
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 4.8e-11 71.6 64 48.4
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 5.3e-10 68.2 59 50.8
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 2.6e-09 65.9 115 31.3
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 3.4e-09 65.5 110 31.8
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 3.4e-09 65.5 110 31.8
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 3.4e-09 65.5 110 31.8
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 3.4e-09 65.5 110 31.8
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 4.5e-09 65.1 109 28.4
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 7.6e-09 64.3 103 37.9
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 1.7e-08 63.2 106 31.1
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 1.7e-08 63.2 103 33.0
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.7e-08 63.2 108 31.5
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 1.7e-08 63.2 105 31.4
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 1.7e-08 63.2 114 32.5
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 2.2e-08 62.8 110 30.0
Sed0001280 Sechium edule HOM05D003440 ORTHO05D003953 2.2e-08 62.8 58 46.6
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 2.9e-08 62.4 112 31.2
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 2.9e-08 62.4 112 31.2
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 2.9e-08 62.4 107 32.7
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 3.8e-08 62.0 58 44.8
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 3.8e-08 62.0 108 31.5
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 4.9e-08 61.6 80 33.8
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 4.9e-08 61.6 57 43.9
Sabra19G0062600 Salix brachista HOM05D003440 ORTHO05D003953 4.9e-08 61.6 80 36.2
Potri.019G053100 Populus trichocarpa HOM05D003440 ORTHO05D003953 6.4e-08 61.2 80 36.2
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 6.4e-08 61.2 116 28.4
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 8.4e-08 60.8 112 31.2
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 1.1e-07 60.5 112 31.2
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 1.1e-07 60.5 59 42.4
PGSC0003DMG400011798 Solanum tuberosum HOM05D003440 ORTHO05D003953 1.1e-07 60.5 67 40.3
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 1.1e-07 60.5 56 42.9
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 1.1e-07 60.5 56 44.6
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 1.4e-07 60.1 75 38.7
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 1.4e-07 60.1 102 32.4
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 1.4e-07 60.1 110 29.1
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.4e-07 60.1 57 47.4
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.4e-07 60.1 57 47.4
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.9e-07 59.7 56 41.1
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.9e-07 59.7 56 41.1
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 1.9e-07 59.7 56 42.9
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.9e-07 59.7 56 42.9
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.9e-07 59.7 56 42.9
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 1.9e-07 59.7 105 27.6
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 1.9e-07 59.7 56 42.9
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 1.9e-07 59.7 106 30.2
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 1.9e-07 59.7 116 31.9
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 2.4e-07 59.3 56 42.9
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 2.4e-07 59.3 102 30.4
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 2.4e-07 59.3 102 31.4
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 3.2e-07 58.9 78 37.2
CDE12G0097 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 3.2e-07 58.9 111 31.5
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 3.2e-07 58.9 56 41.1
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 3.2e-07 58.9 102 32.4
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 3.2e-07 58.9 105 27.6
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 3.2e-07 58.9 56 42.9
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 3.2e-07 58.9 56 42.9
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 4.2e-07 58.5 56 41.1
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 4.2e-07 58.5 106 29.2
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 4.2e-07 58.5 105 31.4
Rhsim09G0129600 Rhododendron simsii HOM05D003440 ORTHO05D003953 4.2e-07 58.5 76 40.8
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 4.2e-07 58.5 56 41.1
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 4.2e-07 58.5 107 30.8
Ciclev10013140m.g Citrus clementina HOM05D003440 ORTHO05D003953 5.5e-07 58.2 108 30.6
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 5.5e-07 58.2 56 41.1
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.5e-07 58.2 56 41.1
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.5e-07 58.2 56 41.1
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 5.5e-07 58.2 56 41.1
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 5.5e-07 58.2 102 30.4
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 5.5e-07 58.2 102 31.4
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 7.1e-07 57.8 117 29.9
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 7.1e-07 57.8 116 31.0
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 7.1e-07 57.8 106 29.2
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 7.1e-07 57.8 73 35.6
Manes.08G166301 Manihot esculenta HOM05D003440 ORTHO05D003953 9.3e-07 57.4 44 59.1
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 9.3e-07 57.4 110 31.8
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 9.3e-07 57.4 56 39.3
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 1.2e-06 57.0 112 30.4
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 1.2e-06 57.0 56 39.3
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 1.2e-06 57.0 56 39.3
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 1.2e-06 57.0 55 40.0
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.2e-06 57.0 56 39.3
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 1.6e-06 56.6 91 31.9
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 1.6e-06 56.6 88 31.8
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.6e-06 56.6 109 30.3
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 1.6e-06 56.6 105 27.6
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 1.6e-06 56.6 56 41.1
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 1.6e-06 56.6 109 27.5
vmacro10410 Vaccinium macrocarpon HOM05D003440 ORTHO05D003953 1.6e-06 56.6 79 35.4
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 1.6e-06 56.6 56 41.1
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 2.1e-06 56.2 112 29.5
CDE04G0842 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 2.7e-06 55.8 92 38.0
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 4.6e-06 55.1 117 30.8
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 6.0e-06 54.7 109 27.5
Solyc09g005200.3 Solanum lycopersicum HOM05D003440 ORTHO05D003953 7.9e-06 54.3 38 52.6
Sopen09g001180 Solanum pennellii HOM05D003440 ORTHO05D003953 7.9e-06 54.3 38 52.6


User provided reference genes

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