Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4190 Fragaria x ananassa HOM05D006905 ORTHO05D003398 7.6e-112 407.1 199 100.0
FAN05G2111 Fragaria x ananassa HOM05D006905 ORTHO05D003398 5.6e-107 391.0 221 89.1
FAN14G2439 Fragaria x ananassa HOM05D006905 ORTHO05D003398 9.9e-104 380.2 219 86.3
FvH4_6g03440 Fragaria vesca HOM05D006905 ORTHO05D003398 4.9e-103 377.9 219 86.3
FAN02G2898 Fragaria x ananassa HOM05D006905 ORTHO05D003398 7.8e-101 370.5 221 85.1
FAN09G1595 Fragaria x ananassa HOM05D006905 ORTHO05D003398 3.0e-100 368.6 221 84.6
RcHm_v2.0_Chr3g0451941 Rosa chinensis HOM05D006905 ORTHO05D003398 1.5e-88 329.7 222 76.6
Prupe.6G339800 Prunus persica HOM05D006905 ORTHO05D003398 2.0e-72 276.2 221 65.2
MD04G1220800 Malus domestica HOM05D006905 ORTHO05D003398 7.6e-72 274.2 221 64.3
Cfa006463 Carpinus fangiana HOM05D006905 ORTHO05D003398 1.6e-61 240.0 224 56.2
Cpa.g.sc117.65 Carica papaya HOM05D006905 ORTHO05D003398 7.9e-61 237.7 216 56.9
Potri.013G036500 Populus trichocarpa HOM05D006905 ORTHO05D003398 7.9e-61 237.7 220 59.5
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 5.7e-59 231.5 222 55.0
Manes.09G156000 Manihot esculenta HOM05D006905 ORTHO05D003398 9.7e-59 230.7 221 55.2
GSVIVG01021847001 Vitis vinifera HOM05D006905 ORTHO05D003398 2.2e-58 229.6 215 57.7
TWI56G1496 Tripterygium wilfordii HOM05D006905 ORTHO05D003398 3.7e-58 228.8 215 57.2
Ciclev10002392m.g Citrus clementina HOM05D006905 ORTHO05D003398 8.2e-58 227.6 203 58.6
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 8.2e-58 227.6 193 57.0
CANSAT54G0047 Cannabis sativa HOM05D006905 ORTHO05D003398 1.8e-57 226.5 218 55.5
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 5.3e-57 224.9 225 52.9
QL03p024500 Quercus lobata HOM05D006905 ORTHO05D003398 6.9e-57 224.6 209 55.5
TAR636G1711 Trochodendron aralioides HOM05D006905 ORTHO05D003398 6.9e-57 224.6 217 56.2
CiPaw.07G006400 Carya illinoinensis HOM05D006905 ORTHO05D003398 9.1e-57 224.2 201 58.7
Dinv11554 Davidia involucrata HOM05D006905 ORTHO05D003398 1.5e-56 223.4 215 56.7
Thecc.05G193600 Theobroma cacao HOM05D006905 ORTHO05D003398 1.5e-56 223.4 196 57.1
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 2.0e-56 223.0 225 52.0
Nitab4.5_0002361g0060 Nicotiana tabacum HOM05D006905 ORTHO05D003398 5.5e-54 214.9 221 52.5
vmacro05070 Vaccinium macrocarpon HOM05D006905 ORTHO05D003398 5.5e-54 214.9 236 50.0
Sed0006348 Sechium edule HOM05D006905 ORTHO05D003398 7.2e-54 214.5 224 53.1
Atru.chr2.743 Acer truncatum HOM05D006905 ORTHO05D003398 1.6e-53 213.4 225 52.0
Atru.chr2.731 Acer truncatum HOM05D006905 ORTHO05D003398 2.7e-53 212.6 225 51.1
Nn4g26306 Nelumbo nucifera HOM05D006905 ORTHO05D003398 4.7e-53 211.8 218 54.6
CAN.G134.166 Capsicum annuum HOM05D006905 ORTHO05D003398 1.8e-52 209.9 220 51.8
Migut.N01907 Erythranthe guttata HOM05D006905 ORTHO05D003398 3.0e-52 209.1 218 51.8
EL10Ac4g09180 Beta vulgaris HOM05D006905 ORTHO05D003398 3.9e-52 208.8 222 48.2
PGR083G0691 Punica granatum HOM05D006905 ORTHO05D003398 6.7e-52 208.0 232 51.3
Solyc01g097820.4 Solanum lycopersicum HOM05D006905 ORTHO05D003398 6.7e-52 208.0 219 51.6
CsaV3_2G004310 Cucumis sativus L. HOM05D006905 ORTHO05D003398 1.1e-51 207.2 220 51.8
PGSC0003DMG400022508 Solanum tuberosum HOM05D006905 ORTHO05D003398 2.0e-51 206.5 219 51.6
PGR083G1281 Punica granatum HOM05D006905 ORTHO05D003398 4.4e-51 205.3 208 53.4
THA.LOC104802823 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 4.4e-51 205.3 219 51.6
Nitab4.5_0013433g0040 Nicotiana tabacum HOM05D006905 ORTHO05D003398 7.4e-51 204.5 222 50.0
Actinidia30925 Actinidia chinensis HOM05D006905 ORTHO05D003398 1.3e-50 203.8 216 52.8
Glyma.10G160600 Glycine max HOM05D006905 ORTHO05D003398 1.7e-50 203.4 226 51.3
Sopen01g041420 Solanum pennellii HOM05D006905 ORTHO05D003398 1.7e-50 203.4 194 55.2
arahy.Tifrunner.gnm1.ann1.PI1FXK Arachis hypogaea HOM05D006905 ORTHO05D003398 2.8e-50 202.6 175 60.0
HanXRQChr12g0384101 Helianthus annuus HOM05D006905 ORTHO05D003398 2.8e-50 202.6 224 51.8
MBI04_g20814_MAGBIO Magnolia biondii HOM05D006905 ORTHO05D003398 2.8e-50 202.6 184 55.4
THA.LOC104802824 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 8.2e-50 201.1 229 49.3
Aqoxy5G00478 Aquilegia oxysepala HOM05D006905 ORTHO05D003398 1.4e-49 200.3 194 53.1
AL3G15180 Arabidopsis lyrata HOM05D006905 ORTHO05D003398 3.1e-49 199.1 191 54.5
Peaxi162Scf00404g00025 Petunia axillaris HOM05D006905 ORTHO05D003398 7.0e-49 198.0 224 49.1
Lalb_Chr06g0167991 Lupinus albus HOM05D006905 ORTHO05D003398 2.6e-48 196.1 175 58.3
Phvul.007G186100 Phaseolus vulgaris HOM05D006905 ORTHO05D003398 4.5e-48 195.3 215 51.6
Sc20g0000270 Simmondsia chinensis HOM05D006905 ORTHO05D003398 5.9e-48 194.9 217 47.5
AT3G04890 Arabidopsis thaliana HOM05D006905 ORTHO05D003398 1.0e-47 194.1 212 47.6
Lsat_1_v5_gn_3_28040 Lactuca sativa HOM05D006905 ORTHO05D003398 1.3e-47 193.7 222 47.3
Thhalv10021425m.g Eutrema salsugineum HOM05D006905 ORTHO05D003398 1.7e-47 193.4 212 49.5
Sp3g03710 Schrenkiella parvula HOM05D006905 ORTHO05D003398 2.2e-47 193.0 192 53.6
SGA_v2.0_scaffold5G02928 Striga asiatica HOM05D006905 ORTHO05D003398 2.2e-47 193.0 219 46.6
VMungo0720G0828 Vigna mungo HOM05D006905 ORTHO05D003398 6.5e-47 191.4 195 52.3
ECA246G1419 Erigeron canadensis HOM05D006905 ORTHO05D003398 1.9e-46 189.9 222 46.8
TPR.G11158 Trifolium pratense HOM05D006905 ORTHO05D003398 3.2e-46 189.1 226 47.8
Carub.0003s0409 Capsella rubella HOM05D006905 ORTHO05D003398 9.4e-46 187.6 212 48.6
CSS0017923 Camellia sinensis var. sinensis HOM05D006905 ORTHO05D003398 2.7e-45 186.0 199 52.8
Eucgr.B01715 Eucalyptus grandis HOM05D006905 ORTHO05D003398 1.4e-44 183.7 180 55.6
A05p42710 Brassica napus HOM05D006905 ORTHO05D003398 2.3e-44 183.0 179 54.7
BolC5t34896H Brassica oleracea HOM05D006905 ORTHO05D003398 6.7e-44 181.4 179 52.5
Aa31LG5G15280 Aethionema arabicum HOM05D006905 ORTHO05D003398 8.8e-44 181.0 195 48.2
CARHR079160 Cardamine hirsuta HOM05D006905 ORTHO05D003398 8.8e-44 181.0 213 47.4
BraA05t22982Z Brassica rapa HOM05D006905 ORTHO05D003398 1.2e-43 180.6 179 54.7
ATR0737G167 Amborella trichopoda HOM05D006905 ORTHO05D003398 2.6e-43 179.5 223 44.8
Eucgr.L02187 Eucalyptus grandis HOM05D006905 ORTHO05D003398 4.4e-43 178.7 178 54.5
BcaNung06537 Brassica carinata HOM05D006905 ORTHO05D003398 9.7e-43 177.6 181 53.0
C05p62430 Brassica napus HOM05D006905 ORTHO05D003398 9.7e-43 177.6 181 53.0
Hund22112 Selenicereus undatus HOM05D006905 ORTHO05D003398 2.4e-41 172.9 227 42.7
ClCG02G016440 Citrullus lanatus HOM05D006905 ORTHO05D003398 9.1e-41 171.0 211 47.4
SEGI_10814 Sequoiadendron giganteum HOM05D006905 ORTHO05D003398 1.9e-38 163.3 180 44.4
AUR62000979 Chenopodium quinoa HOM05D006905 ORTHO05D003398 2.7e-37 159.5 169 48.5
unitig_8.g4913 Utricularia gibba HOM05D006905 ORTHO05D003398 5.2e-36 155.2 200 39.0
SalBow8G0693 Salvia bowleyana HOM05D006905 ORTHO05D003398 1.5e-35 153.7 160 47.5
Mapoly0006s0024 Marchantia polymorpha HOM05D006905 ORTHO05D003398 2.2e-34 149.8 187 41.7
BcaC05g30566 Brassica carinata HOM05D006905 ORTHO05D003398 1.2e-32 144.1 127 57.5
Ah.06g192620 Amaranthus hybridus HOM05D000416 ORTHO05D000322 5.9e-32 141.7 119 55.5
Medtr1g081280 Medicago truncatula HOM05D006905 ORTHO05D003398 1.1e-30 137.5 187 42.2
Mapoly0059s0020 Marchantia polymorpha HOM05D006905 ORTHO05D003398 9.5e-30 134.4 150 44.0
Mapoly0178s0027 Marchantia polymorpha HOM05D006905 ORTHO05D003398 9.5e-30 134.4 135 46.7
Mapoly0016s0115 Marchantia polymorpha HOM05D006905 ORTHO05D003398 1.6e-29 133.7 150 44.0
Cc02_g31660 Coffea canephora HOM05D006905 ORTHO05D003398 4.0e-28 129.0 114 50.0
Pp3c24_12540 Physcomitrium patens HOM05D006905 ORTHO05D003398 6.8e-28 128.3 189 38.6
Haze_04329 Corylus avellana HOM05D006905 ORTHO05D003398 9.8e-27 124.4 158 47.5
Lj5g0004067 Lotus japonicus HOM05D006905 ORTHO05D003398 1.3e-26 124.0 165 44.2
arahy.Tifrunner.gnm1.ann1.N7GLTS Arachis hypogaea HOM05D006905 ORTHO05D003398 1.4e-25 120.6 187 41.2
Sabra13G0035600 Salix brachista HOM05D006905 ORTHO05D003398 8.6e-23 111.3 363 28.9
AUR62004986 Chenopodium quinoa HOM05D006905 ORTHO05D003398 1.1e-22 110.9 68 69.1
AagrBONN_evm.TU.Sc2ySwM_117.1949 Anthoceros agrestis HOM05D006905 ORTHO05D003398 1.9e-22 110.2 157 38.9
Oeu023372.2 Olea europaea HOM05D006905 ORTHO05D003398 2.5e-22 109.8 65 67.7
Cre10.g464250 Chlamydomonas reinhardtii HOM05D006905 ORTHO05D003398 3.3e-22 109.4 186 37.6
MELO3C004363.2 Cucumis melo HOM05D006905 ORTHO05D003398 1.4e-20 104.0 155 43.2
Cc02_g31650 Coffea canephora HOM05D006905 ORTHO05D003398 6.8e-20 101.7 70 55.7
Hma1.2p1_0083F.1_g042790 Hydrangea macrophylla HOM05D006905 ORTHO05D003398 4.4e-19 99.0 69 65.2
Rhsim07G0175500 Rhododendron simsii HOM05D006905 ORTHO05D003398 1.3e-18 97.4 161 41.0
Glyma.20G227801 Glycine max HOM05D006905 ORTHO05D003398 4.9e-18 95.5 113 49.6
Potri.013G037050 Populus trichocarpa HOM05D006905 ORTHO05D003398 4.1e-17 92.4 125 48.0
Mapoly0153s0018 Marchantia polymorpha HOM05D007525 ORTHO05D003398 9.2e-17 91.3 218 27.1
Gohir.A08G226300 Gossypium hirsutum HOM05D006905 ORTHO05D003398 3.9e-15 85.9 143 38.5
HanXRQChr06g0176711 Helianthus annuus HOM05D006905 ORTHO05D003398 7.3e-14 81.6 55 60.0
Gohir.A01G104050 Gossypium hirsutum HOM05D006905 ORTHO05D003398 1.2e-13 80.9 111 41.4
SMO358G0422 Selaginella moellendorffii HOM05D007525 ORTHO05D003398 1.2e-13 80.9 159 28.9
Pp3c4_17920 Physcomitrium patens HOM05D007525 ORTHO05D003398 2.8e-13 79.7 163 27.0
CBR_g31994 Chara braunii HOM05D007525 ORTHO05D003398 5.8e-11 72.0 182 22.5
MELO3C021185.2 Cucumis melo HOM05D007525 ORTHO05D003398 1.3e-10 70.9 209 27.3
CANSAT56G0175 Cannabis sativa HOM05D007525 ORTHO05D003398 1.7e-10 70.5 211 25.1
Medtr8g028545 Medicago truncatula HOM05D007525 ORTHO05D003398 1.7e-10 70.5 200 27.5
Manes.05G030450 Manihot esculenta HOM05D007525 ORTHO05D003398 2.2e-10 70.1 205 27.3
Psat4g157560 Pisum sativum HOM05D007525 ORTHO05D003398 2.2e-10 70.1 194 27.8
PGR042G3120 Punica granatum HOM05D007525 ORTHO05D003398 2.2e-10 70.1 209 28.2
ClCG06G003450 Citrullus lanatus HOM05D007525 ORTHO05D003398 2.9e-10 69.7 211 28.9
CsaV3_6G000860 Cucumis sativus L. HOM05D007525 ORTHO05D003398 2.9e-10 69.7 211 27.0
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.7e-10 69.3 207 26.1
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.7e-10 69.3 206 26.2
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.7e-10 69.3 206 26.2
FvH4_7g15085 Fragaria vesca HOM05D007525 ORTHO05D003398 4.9e-10 68.9 206 26.2
Thecc.01G354100 Theobroma cacao HOM05D007525 ORTHO05D003398 4.9e-10 68.9 203 27.1
Ca_03496_v3 Cicer arietinum L. HOM05D007525 ORTHO05D003398 6.4e-10 68.6 199 27.1
RcHm_v2.0_Chr1g0357281 Rosa chinensis HOM05D007525 ORTHO05D003398 6.4e-10 68.6 201 25.9
MD01G1069500 Malus domestica HOM05D007525 ORTHO05D003398 8.3e-10 68.2 209 25.4
Oeu036594.1 Olea europaea HOM05D007525 ORTHO05D003398 1.1e-09 67.8 208 27.4
Psat6g147000 Pisum sativum HOM05D002360 ORTHO05D006297 1.1e-09 67.8 96 41.7
MSTRG.4841 Avicennia marina HOM05D007525 ORTHO05D003398 1.4e-09 67.4 212 26.4
GSVIVG01026980001 Vitis vinifera HOM05D007525 ORTHO05D003398 1.4e-09 67.4 206 26.2
Aqoxy7G00302 Aquilegia oxysepala HOM05D007525 ORTHO05D003398 1.9e-09 67.0 214 26.2
Prupe.2G175600 Prunus persica HOM05D007525 ORTHO05D003398 1.9e-09 67.0 197 25.4
CiPaw.01G065400 Carya illinoinensis HOM05D007525 ORTHO05D003398 2.4e-09 66.6 197 27.4
CSS0031135 Camellia sinensis var. sinensis HOM05D007525 ORTHO05D003398 3.2e-09 66.2 212 25.0
PSO478G5123 Papaver somniferum HOM05D007525 ORTHO05D003398 5.4e-09 65.5 213 25.4
TAR636G1192 Trochodendron aralioides HOM05D007525 ORTHO05D003398 5.4e-09 65.5 208 26.0
AUR62004400 Chenopodium quinoa HOM05D007525 ORTHO05D003398 9.2e-09 64.7 198 26.3
SMO146G0019 Selaginella moellendorffii HOM05D006905 ORTHO05D003398 9.2e-09 64.7 161 26.1
Atru.chr5.548 Acer truncatum HOM05D007525 ORTHO05D003398 1.2e-08 64.3 199 27.1
SGA_v2.0_scaffold43G16396 Striga asiatica HOM05D007525 ORTHO05D003398 1.2e-08 64.3 232 24.6
Migut.N01460 Erythranthe guttata HOM05D007525 ORTHO05D003398 1.6e-08 63.9 202 27.2
Duzib133G0712 Durio zibethinus HOM05D007525 ORTHO05D003398 2.0e-08 63.5 205 25.4
Nn1g01647 Nelumbo nucifera HOM05D007525 ORTHO05D003398 2.7e-08 63.2 209 24.4
Actinidia10060 Actinidia chinensis HOM05D007525 ORTHO05D003398 4.6e-08 62.4 217 24.0
CAN.G78.117 Capsicum annuum HOM05D007525 ORTHO05D003398 4.6e-08 62.4 179 27.4
Gohir.D07G146200 Gossypium hirsutum HOM05D007525 ORTHO05D003398 6.0e-08 62.0 205 25.4
Zm00001eb073280 Zea mays HOM05D007525 ORTHO05D003398 6.0e-08 62.0 138 27.5
AUR62022606 Chenopodium quinoa HOM05D007525 ORTHO05D003398 7.8e-08 61.6 181 26.0
Pp3c2_27980 Physcomitrium patens HOM05D006905 ORTHO05D003398 7.8e-08 61.6 134 29.9
AagrBONN_evm.TU.Sc2ySwM_344.4395 Anthoceros agrestis HOM05D006905 ORTHO05D003398 1.0e-07 61.2 100 34.0
HPP92_021017 Vanilla planifolia HOM05D007525 ORTHO05D003398 1.0e-07 61.2 185 26.5
Cfa003884 Carpinus fangiana HOM05D007525 ORTHO05D003398 1.3e-07 60.8 206 25.2
Gorai.001G158400 Gossypium raimondii HOM05D007525 ORTHO05D003398 1.7e-07 60.5 178 25.3
VMungo0331G0679 Vigna mungo HOM05D007525 ORTHO05D003398 1.7e-07 60.5 199 25.1
Lj3g0004891 Lotus japonicus HOM05D007525 ORTHO05D003398 2.3e-07 60.1 196 24.0
A05p06060 Brassica napus HOM05D007525 ORTHO05D003398 3.0e-07 59.7 128 28.9
Eucgr.E00102 Eucalyptus grandis HOM05D007525 ORTHO05D003398 3.9e-07 59.3 212 25.5
Ah.05g180250 Amaranthus hybridus HOM05D007525 ORTHO05D003398 5.0e-07 58.9 178 25.8
vmacro13241 Vaccinium macrocarpon HOM05D007525 ORTHO05D003398 8.6e-07 58.2 130 26.2
Cre02.g095105 Chlamydomonas reinhardtii HOM05D006905 ORTHO05D003398 1.5e-06 57.4 139 28.1
Lalb_Chr10g0096641 Lupinus albus HOM05D007525 ORTHO05D003398 1.5e-06 57.4 207 26.1
TPR.G28291 Trifolium pratense HOM05D007525 ORTHO05D003398 1.9e-06 57.0 132 27.3
CDE12G0297 Ceratophyllum demersum HOM05D007525 ORTHO05D003398 3.3e-06 56.2 54 42.6
Nitab4.5_0000915g0170 Nicotiana tabacum HOM05D007525 ORTHO05D003398 9.5e-06 54.7 70 37.1
Peaxi162Scf00020g00126 Petunia axillaris HOM05D007525 ORTHO05D003398 9.5e-06 54.7 70 37.1


User provided reference genes

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