Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.5e-253 876.7 446 100.0
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.7e-250 868.2 446 98.9
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.4e-246 855.9 446 98.2
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 2.9e-244 848.2 446 97.5
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 6.9e-214 747.3 446 88.3
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.6e-213 743.8 446 88.6
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.7e-212 742.7 446 88.6
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 2.6e-192 675.6 461 75.7
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 1.1e-182 643.7 455 74.1
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 2.0e-168 596.3 450 66.7
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 8.3e-167 590.9 454 68.1
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.3e-164 583.6 455 66.4
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 5.0e-164 581.6 447 68.7
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 1.4e-161 573.5 460 66.7
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 5.2e-161 571.6 456 66.0
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 6.8e-161 571.2 451 67.4
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 3.4e-160 568.9 327 88.7
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 1.3e-159 567.0 455 65.9
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 1.3e-159 567.0 458 65.9
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 1.7e-159 566.6 458 65.9
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 4.5e-157 558.5 434 67.5
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 5.0e-156 555.1 450 64.2
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 6.6e-156 554.7 440 65.2
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 7.3e-155 551.2 456 63.4
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 6.1e-154 548.1 433 66.1
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 6.8e-153 544.7 448 64.5
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 3.4e-152 542.3 445 63.6
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 7.5e-152 541.2 453 64.5
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 4.9e-151 538.5 411 65.7
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 3.2e-150 535.8 391 67.8
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 3.2e-150 535.8 435 64.1
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 5.4e-150 535.0 452 63.7
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 5.4e-150 535.0 448 62.5
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 7.0e-150 534.6 454 64.3
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 7.0e-150 534.6 454 63.7
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 9.2e-150 534.3 451 63.4
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 1.2e-149 533.9 463 64.1
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 6.0e-149 531.6 437 65.2
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 1.0e-148 530.8 445 62.5
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 2.3e-148 529.6 449 62.8
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 4.0e-145 518.8 456 62.3
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 9.8e-144 514.2 423 63.8
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 3.7e-143 512.3 438 61.6
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 4.9e-143 511.9 456 60.1
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 7.8e-141 504.6 435 60.0
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 1.9e-139 500.0 442 60.0
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 5.6e-139 498.4 469 59.1
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 1.6e-138 496.9 453 58.9
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.4e-137 493.8 453 58.7
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 2.9e-135 486.1 449 58.8
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 4.1e-134 482.3 401 63.3
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 7.1e-134 481.5 449 58.6
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.1e-133 479.9 451 57.9
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 6.0e-133 478.4 462 56.7
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 7.8e-133 478.0 451 58.5
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.3e-132 477.2 456 57.2
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 1.7e-132 476.9 458 57.0
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 3.0e-132 476.1 449 57.7
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 3.9e-132 475.7 453 57.2
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 8.6e-132 474.6 453 58.5
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 1.1e-131 474.2 453 58.5
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 2.5e-131 473.0 453 58.3
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 5.6e-131 471.9 446 57.2
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 7.3e-131 471.5 453 58.1
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 7.3e-131 471.5 453 58.1
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.2e-130 470.7 453 56.3
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 2.8e-130 469.5 451 58.5
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 3.6e-130 469.2 451 59.0
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 8.1e-130 468.0 457 56.2
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 8.1e-130 468.0 456 56.4
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 4.0e-129 465.7 443 58.7
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 5.2e-129 465.3 445 57.3
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 1.2e-128 464.2 455 54.9
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.5e-128 463.8 450 57.8
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 4.4e-128 462.2 458 55.9
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 4.4e-128 462.2 463 54.0
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 4.9e-127 458.8 457 54.5
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 4.2e-126 455.7 452 56.0
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 3.0e-124 449.5 403 59.3
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 5.1e-124 448.7 450 54.7
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 5.1e-124 448.7 394 58.4
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 6.6e-124 448.4 448 54.5
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 1.5e-123 447.2 454 54.2
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 4.3e-123 445.7 459 54.2
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 1.1e-121 441.0 452 54.6
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 4.0e-121 439.1 444 54.7
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 5.8e-120 435.3 453 54.1
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 5.8e-120 435.3 453 54.1
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 9.9e-120 434.5 460 54.6
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 4.9e-119 432.2 343 62.1
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.9e-118 430.3 466 52.1
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 9.3e-118 427.9 434 52.3
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 3.5e-117 426.0 469 50.7
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 7.3e-115 418.3 395 57.7
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 4.0e-113 412.5 391 56.5
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 9.9e-112 407.9 403 52.6
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 1.3e-111 407.5 346 63.6
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 1.1e-110 404.4 377 55.4
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 1.8e-108 397.1 463 51.0
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.3e-106 391.0 344 57.3
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 1.4e-105 387.5 417 52.0
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 5.8e-104 382.1 454 49.3
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 9.3e-102 374.8 318 65.1
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 7.9e-101 371.7 412 50.7
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 5.7e-99 365.5 227 79.7
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 3.2e-94 349.7 336 58.3
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 2.1e-93 347.1 458 47.8
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 3.1e-89 333.2 364 54.7
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 3.4e-88 329.7 252 67.5
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 6.7e-84 315.5 356 51.1
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 1.3e-82 311.2 414 43.5
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 3.0e-76 290.0 388 44.3
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.2e-72 278.1 456 44.7
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 1.3e-71 274.6 393 43.0
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 7.4e-67 258.8 227 61.7
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.9e-62 244.2 313 51.4
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 6.8e-60 235.7 229 57.2
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 8.3e-58 228.8 397 39.3
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 4.5e-56 223.0 393 38.4
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.0e-55 221.9 395 37.7
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 6.6e-47 192.6 420 34.8
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 4.7e-29 133.3 108 60.2
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 4.6e-24 116.7 210 38.1
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 2.1e-21 107.8 228 36.8
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 4.0e-20 103.6 172 37.8
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.4e-17 95.1 75 61.3
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 2.8e-13 80.9 414 24.6
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 8.1e-13 79.3 200 31.0
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 4.0e-12 77.0 388 24.0
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 6.8e-12 76.3 185 31.4
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 5.6e-06 56.6 83 42.2


User provided reference genes

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