Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.9e-79 298.1 156 100.0
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 8.1e-77 290.4 156 98.1
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-57 226.9 158 81.6
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 6.2e-53 211.1 147 81.0
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 3.8e-50 201.8 109 96.3
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.5e-43 179.9 171 64.3
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 4.9e-42 174.9 158 67.1
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 9.3e-41 170.6 168 59.5
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 3.5e-40 168.7 166 59.0
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.5e-40 168.7 165 60.0
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 3.5e-40 168.7 168 60.1
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.6e-40 168.3 165 60.0
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.9e-40 167.5 165 58.8
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.8e-39 166.4 165 59.4
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 2.3e-39 166.0 168 58.3
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 6.7e-39 164.5 170 59.4
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.1e-38 163.7 166 58.4
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 3.3e-38 162.2 107 78.5
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 3.3e-38 162.2 107 78.5
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 4.3e-38 161.8 168 56.0
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.3e-37 160.2 170 56.5
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 2.8e-37 159.1 164 56.7
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 3.7e-37 158.7 164 58.5
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 3.7e-37 158.7 170 55.3
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 6.3e-37 157.9 177 55.4
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 8.2e-37 157.5 99 80.8
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 8.2e-37 157.5 169 56.2
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.8e-36 156.4 167 57.5
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 2.4e-36 156.0 111 74.8
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 2.4e-36 156.0 113 74.3
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 3.1e-36 155.6 159 59.1
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 3.1e-36 155.6 120 66.7
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 4.1e-36 155.2 100 77.0
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 4.1e-36 155.2 104 75.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 5.3e-36 154.8 169 55.6
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 6.9e-36 154.5 105 75.2
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 6.9e-36 154.5 102 76.5
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 9.0e-36 154.1 170 52.9
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 9.0e-36 154.1 162 57.4
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 9.0e-36 154.1 103 75.7
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 9.0e-36 154.1 160 58.1
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 9.0e-36 154.1 160 58.1
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 1.2e-35 153.7 166 54.2
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.5e-35 153.3 99 76.8
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.5e-35 153.3 99 79.8
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 2.6e-35 152.5 135 62.2
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 4.5e-35 151.8 99 77.8
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 4.5e-35 151.8 99 79.8
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 4.5e-35 151.8 134 61.9
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.0e-34 150.6 99 76.8
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.0e-34 150.6 104 75.0
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 1.7e-34 149.8 125 65.6
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.7e-34 149.8 161 55.9
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.7e-34 149.8 161 55.9
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 2.2e-34 149.4 120 64.2
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 2.2e-34 149.4 157 55.4
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.2e-34 149.4 104 72.1
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 2.2e-34 149.4 99 76.8
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 2.9e-34 149.1 166 54.2
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 3.8e-34 148.7 97 75.3
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 5.0e-34 148.3 111 72.1
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 6.5e-34 147.9 99 75.8
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 6.5e-34 147.9 168 51.8
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 6.5e-34 147.9 99 76.8
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 8.5e-34 147.5 120 62.5
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 8.5e-34 147.5 119 64.7
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 8.5e-34 147.5 101 74.3
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 8.5e-34 147.5 170 53.5
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 8.5e-34 147.5 120 63.3
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 8.5e-34 147.5 166 55.4
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.1e-33 147.1 164 51.2
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 1.1e-33 147.1 131 61.8
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.1e-33 147.1 98 75.5
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.1e-33 147.1 100 75.0
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.9e-33 146.4 115 65.2
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.9e-33 146.4 99 76.8
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.9e-33 146.4 99 76.8
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.9e-33 146.4 101 73.3
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 3.2e-33 145.6 140 57.9
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 3.2e-33 145.6 114 67.5
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 3.2e-33 145.6 114 67.5
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 3.2e-33 145.6 154 56.5
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 3.2e-33 145.6 154 56.5
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 4.2e-33 145.2 101 73.3
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 5.5e-33 144.8 114 68.4
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 5.5e-33 144.8 107 69.2
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 7.2e-33 144.4 114 67.5
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 7.2e-33 144.4 114 67.5
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 7.2e-33 144.4 172 49.4
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 9.4e-33 144.1 99 73.7
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 9.4e-33 144.1 102 72.5
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 9.4e-33 144.1 104 70.2
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.2e-32 143.7 104 70.2
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 2.7e-32 142.5 157 52.9
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 2.7e-32 142.5 160 55.0
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 3.6e-32 142.1 98 71.4
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 4.6e-32 141.7 152 58.6
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 6.1e-32 141.4 99 69.7
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 6.1e-32 141.4 107 64.5
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 7.9e-32 141.0 154 53.9
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 2.3e-31 139.4 100 73.0
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 3.0e-31 139.0 99 67.7
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 3.0e-31 139.0 98 69.4
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 3.0e-31 139.0 161 52.2
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.1e-30 137.1 99 69.7
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 3.3e-30 135.6 101 67.3
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.3e-29 133.7 98 69.4
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.7e-29 133.3 101 67.3
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.1e-28 130.6 164 47.0
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.6e-27 125.9 94 70.2
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 7.7e-27 124.4 113 59.3
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 7.7e-27 124.4 111 64.0
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.2e-26 122.9 99 62.6
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 2.9e-26 122.5 80 75.0
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 3.2e-25 119.0 79 74.7
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 2.7e-24 115.9 138 50.7
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.4e-23 113.6 79 72.2
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 6.7e-23 111.3 142 45.1
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-22 110.5 83 68.7
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 4.4e-22 108.6 95 57.9
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 9.7e-22 107.5 125 53.6
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.0e-18 97.4 95 51.6
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 1.7e-18 96.7 95 57.9
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 2.2e-18 96.3 104 51.9
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 4.2e-17 92.0 113 54.0
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.3e-14 82.4 57 71.9
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 6.3e-13 78.2 94 42.6
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 6.3e-13 78.2 92 44.6
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 5.3e-12 75.1 79 50.6
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.2e-08 63.9 37 83.8
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 2.7e-08 62.8 40 75.0
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 4.7e-08 62.0 45 68.9
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 4.7e-08 62.0 45 68.9
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 4.7e-08 62.0 45 68.9
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 2.3e-07 59.7 43 76.7
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 9.7e-06 54.3 47 59.6


User provided reference genes

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