Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.4e-147 525.0 276 100.0
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.4e-147 525.0 276 100.0
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 3.2e-145 518.5 276 98.9
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-144 516.5 276 98.6
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.7e-142 507.7 287 95.1
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 6.3e-141 504.2 276 96.4
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 3.1e-132 475.3 276 88.4
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 7.0e-132 474.2 276 88.0
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.3e-130 469.9 275 87.6
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 2.7e-128 462.2 276 84.1
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.0e-127 460.3 273 85.3
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.0e-127 460.3 276 85.5
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 6.8e-127 457.6 276 85.5
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 6.8e-127 457.6 276 84.4
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 1.7e-125 453.0 275 82.5
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 7.0e-124 447.6 273 83.5
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.2e-123 446.8 277 83.8
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 5.9e-123 444.5 276 82.6
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 7.7e-123 444.1 277 82.3
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.7e-122 443.0 274 84.3
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 5.0e-122 441.4 274 83.2
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.9e-121 439.5 274 83.6
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 1.9e-121 439.5 274 83.2
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 3.3e-121 438.7 274 82.5
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 5.5e-121 438.0 273 81.7
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 7.2e-121 437.6 273 81.0
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 9.5e-121 437.2 277 81.2
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 9.5e-121 437.2 277 81.2
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 9.5e-121 437.2 273 80.6
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.2e-120 436.8 273 81.0
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 1.6e-120 436.4 273 81.3
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 2.1e-120 436.0 274 82.5
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 2.8e-120 435.6 277 80.9
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 2.8e-120 435.6 277 80.9
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 8.0e-120 434.1 273 81.3
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 8.0e-120 434.1 277 81.6
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 8.0e-120 434.1 274 80.7
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 1.0e-119 433.7 272 82.4
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 1.4e-119 433.3 272 80.9
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 3.0e-119 432.2 274 80.7
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 3.0e-119 432.2 274 80.7
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 5.2e-119 431.4 269 81.0
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 5.2e-119 431.4 272 80.5
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 6.8e-119 431.0 270 80.7
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 8.9e-119 430.6 273 80.6
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.2e-118 430.3 274 79.9
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 3.4e-118 428.7 273 81.7
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 5.7e-118 427.9 273 79.9
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 5.7e-118 427.9 273 80.2
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 9.8e-118 427.2 277 80.1
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.7e-117 426.4 272 79.4
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.2e-117 426.0 272 79.4
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.2e-117 426.0 272 79.4
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 2.8e-117 425.6 277 79.4
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 2.8e-117 425.6 274 81.0
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 4.9e-117 424.9 274 78.5
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 4.9e-117 424.9 274 79.6
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.1e-116 423.7 274 78.8
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.4e-116 423.3 274 78.1
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.4e-116 423.3 269 79.6
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.1e-116 422.2 274 78.1
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 3.1e-116 422.2 274 78.8
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 4.1e-116 421.8 276 78.3
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 5.4e-116 421.4 276 77.9
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 7.0e-116 421.0 273 78.0
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 9.2e-116 420.6 280 78.2
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 1.2e-115 420.2 292 75.0
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 3.5e-115 418.7 304 73.4
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 3.5e-115 418.7 274 78.1
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.3e-114 416.8 274 77.7
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.3e-114 416.8 272 78.3
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 3.8e-114 415.2 277 76.9
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 2.5e-113 412.5 283 75.3
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 3.3e-113 412.1 274 78.5
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 9.5e-113 410.6 274 78.8
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.1e-112 409.5 279 76.3
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 4.7e-112 408.3 277 75.8
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 8.0e-112 407.5 276 74.6
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 4.0e-111 405.2 276 73.9
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 5.2e-111 404.8 277 75.5
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 5.2e-111 404.8 277 75.5
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 5.2e-111 404.8 277 76.2
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 6.8e-111 404.4 277 75.5
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 6.8e-111 404.4 277 75.5
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 6.8e-111 404.4 276 73.9
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 6.8e-111 404.4 277 75.5
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-110 403.3 277 75.1
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.0e-110 402.9 276 76.8
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 2.6e-110 402.5 277 74.7
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 4.4e-110 401.7 277 75.1
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 9.8e-110 400.6 277 74.4
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 9.8e-110 400.6 277 74.7
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 3.2e-108 395.6 274 71.9
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 9.2e-108 394.0 277 73.3
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 3.5e-107 392.1 277 72.9
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 3.5e-107 392.1 277 72.9
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 3.5e-107 392.1 277 72.9
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.0e-106 390.6 335 64.5
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.7e-106 389.8 319 66.5
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 2.3e-106 389.4 369 59.9
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 8.6e-106 387.5 281 72.2
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 3.3e-105 385.6 274 73.0
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.6e-104 383.3 265 75.1
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 4.7e-104 381.7 290 68.6
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.4e-103 380.2 322 65.2
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.5e-102 376.7 268 72.4
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 3.7e-101 372.1 253 77.1
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 4.9e-101 371.7 273 70.3
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.4e-100 370.2 256 73.0
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 2.3e-98 362.8 269 68.4
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.0e-98 362.5 271 67.9
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.9e-98 362.1 271 67.9
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 1.2e-96 357.1 265 67.5
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 6.4e-93 344.7 270 62.2
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 9.2e-92 340.9 265 65.7
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.5e-91 339.0 488 45.5
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.0e-90 337.4 488 45.3
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.1e-89 334.0 274 60.9
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 9.5e-89 330.9 213 81.2
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.7e-85 320.1 299 66.2
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.4e-84 317.0 271 62.0
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 6.0e-83 311.6 265 61.1
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 2.5e-81 306.2 255 63.5
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 8.1e-80 301.2 263 58.6
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 8.1e-80 301.2 263 58.2
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-79 300.4 255 63.9
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 5.2e-79 298.5 263 58.6
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-77 293.1 258 62.8
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 3.8e-77 292.4 282 57.1
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 3.8e-77 292.4 265 57.4
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 4.9e-77 292.0 259 62.9
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 6.4e-77 291.6 282 57.4
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 4.2e-76 288.9 261 64.8
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 3.5e-75 285.8 282 57.4
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.0e-74 284.3 282 56.7
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 3.3e-73 279.3 276 53.6
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 8.1e-72 274.6 164 83.5
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-70 270.8 255 60.4
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 3.2e-68 262.7 275 49.8
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 1.8e-66 256.9 140 93.6
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 6.7e-66 255.0 281 54.1
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 8.7e-66 254.6 256 56.6
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-65 254.2 226 61.5
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 6.4e-61 238.4 266 49.6
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.4e-60 237.3 273 52.0
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 5.8e-54 215.3 251 49.4
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.5e-52 209.9 164 75.0
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 4.6e-51 205.7 269 48.7
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-50 204.1 131 78.6
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.4e-47 193.4 136 75.0
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.9e-44 183.7 137 69.3
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.3e-42 176.8 138 63.8
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.0e-42 176.4 148 63.5
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 8.8e-42 174.9 415 34.0
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 6.3e-40 168.7 219 47.0
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.1e-39 167.9 96 88.5
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.2e-37 160.2 123 66.7
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.5e-36 156.8 101 79.2
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 2.7e-35 153.3 140 65.0
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 5.9e-30 135.6 117 60.7
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 3.8e-29 132.9 264 32.6
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 5.0e-29 132.5 263 32.7
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.1e-27 127.1 73 94.5
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 2.7e-27 126.7 293 30.4
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 4.4e-25 119.4 67 85.1
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.5e-22 109.8 150 46.7
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 2.7e-19 100.1 53 94.3
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 1.8e-18 97.4 82 61.0
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 5.7e-17 92.4 52 88.5
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 7.5e-17 92.0 52 86.5
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 7.5e-17 92.0 52 86.5
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-16 90.9 52 86.5
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.7e-16 90.9 59 78.0
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.2e-16 90.5 69 62.3
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 2.8e-16 90.1 58 72.4
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 3.7e-16 89.7 52 86.5
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 4.8e-16 89.4 71 66.2
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.1e-15 88.2 72 61.1
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.1e-15 88.2 72 61.1
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-15 86.3 50 84.0
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.2e-14 84.7 72 58.3
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.7e-14 83.6 72 59.7
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 2.7e-11 73.6 66 54.5
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 1.8e-07 60.8 52 59.6
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 3.1e-07 60.1 40 75.0


User provided reference genes

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