Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 4.0e-207 724.5 371 100.0
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.3e-201 704.9 371 97.6
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 6.2e-200 700.7 371 97.0
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 6.8e-199 697.2 371 96.5
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 9.2e-196 686.8 372 95.7
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 4.8e-152 541.6 372 79.3
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 4.6e-78 295.8 408 52.9
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 1.6e-75 287.3 411 49.9
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 8.1e-67 258.5 408 47.5
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 6.4e-64 248.8 392 47.4
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 1.1e-63 248.1 399 47.1
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.9e-60 237.3 381 45.4
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 3.6e-59 233.0 400 44.8
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 2.2e-56 223.8 392 43.4
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 6.4e-56 222.2 386 45.9
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.4e-56 221.9 385 43.9
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 1.4e-55 221.1 374 44.7
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.5e-54 216.5 378 43.9
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 8.1e-51 205.3 398 42.2
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 1.1e-50 204.9 316 44.3
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 1.8e-50 204.1 379 42.7
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.1e-50 203.4 372 43.3
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 6.9e-50 202.2 413 39.2
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 2.6e-49 200.3 377 40.3
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 3.4e-49 199.9 406 41.9
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 4.5e-49 199.5 400 41.5
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 4.5e-49 199.5 387 45.2
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.8e-49 199.1 390 42.3
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 9.9e-49 198.4 390 40.5
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 9.9e-49 198.4 395 41.5
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.9e-48 196.8 385 41.8
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 4.9e-48 196.1 374 41.7
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 6.4e-48 195.7 390 42.3
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 8.4e-48 195.3 394 41.1
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 1.4e-47 194.5 369 42.5
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 1.8e-45 187.6 382 41.1
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 3.0e-45 186.8 390 40.8
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 1.1e-44 184.9 374 41.4
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 6.2e-43 179.1 394 38.6
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 6.2e-43 179.1 269 46.5
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.1e-42 178.3 391 40.2
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 1.1e-42 178.3 399 40.4
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 1.1e-42 178.3 416 38.0
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 1.4e-42 177.9 403 40.2
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 2.4e-42 177.2 410 41.0
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 9.0e-42 175.3 393 39.9
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 9.0e-42 175.3 396 38.4
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.2e-41 174.9 378 40.2
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.5e-41 174.5 401 41.1
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 2.6e-41 173.7 392 39.5
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.0e-40 171.8 372 39.5
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 6.5e-40 169.1 419 37.9
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.5e-40 169.1 419 36.3
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 8.4e-40 168.7 377 38.7
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 3.2e-39 166.8 377 38.5
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.5e-38 163.3 378 36.5
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 6.0e-38 162.5 408 36.8
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 6.0e-38 162.5 442 35.7
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 6.0e-38 162.5 369 40.4
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 3.0e-37 160.2 253 44.7
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 6.7e-37 159.1 288 41.3
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.7e-37 159.1 227 44.9
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.5e-36 157.9 261 43.3
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 2.5e-36 157.1 381 39.9
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 3.3e-36 156.8 287 43.9
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 4.3e-36 156.4 400 37.8
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 5.7e-36 156.0 387 38.2
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 7.4e-36 155.6 260 45.4
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 1.3e-35 154.8 241 44.0
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 2.1e-35 154.1 387 38.8
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 8.2e-35 152.1 227 47.1
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 4.5e-33 146.4 402 37.3
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 1.7e-32 144.4 384 35.2
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 2.2e-32 144.1 162 53.7
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 2.2e-32 144.1 379 36.9
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 2.9e-32 143.7 381 36.7
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.5e-31 140.6 372 37.6
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 4.2e-31 139.8 302 40.1
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 6.1e-30 136.0 283 40.3
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.1e-30 136.0 416 33.2
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 7.9e-30 135.6 366 35.8
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 7.9e-30 135.6 261 41.0
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.3e-29 134.8 220 41.4
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.3e-28 129.8 389 36.5
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 5.7e-28 129.4 296 38.2
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 9.7e-28 128.6 364 34.9
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 1.6e-27 127.9 298 36.6
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.2e-27 127.5 417 33.3
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 1.1e-26 125.2 365 31.5
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 2.4e-26 124.0 258 37.6
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 1.2e-25 121.7 139 51.8
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.5e-25 121.3 375 34.9
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 2.6e-25 120.6 359 32.6
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 5.9e-25 119.4 287 38.0
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 1.0e-24 118.6 376 33.8
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 1.0e-24 118.6 371 33.7
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.3e-24 118.2 305 38.7
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 1.1e-23 115.2 238 37.0
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.4e-23 114.8 367 31.9
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.4e-23 114.8 254 37.0
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.9e-23 114.4 421 32.1
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 2.5e-23 114.0 362 34.3
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 4.2e-23 113.2 369 33.1
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.1e-22 110.9 127 52.0
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 2.1e-22 110.9 273 35.5
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 3.9e-21 106.7 325 34.5
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 1.1e-20 105.1 368 32.6
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 2.0e-20 104.4 176 46.6
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 2.6e-20 104.0 140 47.1
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 5.7e-20 102.8 367 32.7
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 5.7e-20 102.8 139 43.9
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 7.4e-20 102.4 149 43.6
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 9.7e-20 102.1 346 32.1
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.7e-19 101.3 173 41.0
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.7e-19 101.3 71 69.0
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 3.7e-19 100.1 374 30.7
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 6.3e-19 99.4 74 64.9
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 6.3e-19 99.4 371 32.6
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 8.2e-19 99.0 146 42.5
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.1e-18 98.6 373 31.9
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 1.8e-18 97.8 361 31.0
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 3.1e-18 97.1 137 43.8
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.9e-18 95.9 148 43.2
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 9.1e-18 95.5 386 30.8
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.2e-17 95.1 338 31.7
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.5e-17 94.7 367 30.8
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 2.6e-17 94.0 129 47.3
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 3.4e-17 93.6 370 31.4
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 4.5e-17 93.2 161 39.8
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 7.7e-17 92.4 367 31.1
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 1.0e-16 92.0 361 30.2
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.3e-16 91.7 148 43.9
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.3e-16 91.7 132 46.2
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 1.7e-16 91.3 367 30.0
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 5.0e-16 89.7 94 55.3
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 6.5e-16 89.4 364 32.7
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.5e-16 89.4 177 35.0
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 2.5e-15 87.4 87 48.3
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 2.5e-15 87.4 87 48.3
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 3.2e-15 87.0 227 37.4
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 4.2e-15 86.7 367 29.2
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.2e-14 85.1 95 46.3
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 2.1e-14 84.3 133 42.1
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 2.7e-14 84.0 367 29.2
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.6e-14 83.6 136 38.2
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 6.1e-14 82.8 63 66.7
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 1.8e-13 81.3 138 38.4
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 3.0e-13 80.5 59 64.4
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 1.5e-12 78.2 368 29.6
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 2.0e-12 77.8 86 46.5
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 5.7e-12 76.3 208 29.3
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 9.7e-12 75.5 367 28.1
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 9.7e-12 75.5 368 29.1
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 1.7e-11 74.7 366 27.9
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 1.7e-11 74.7 366 27.9
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 1.7e-11 74.7 366 27.9
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 3.7e-11 73.6 270 30.0
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 1.1e-10 72.0 325 28.9
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 5.3e-10 69.7 56 57.1
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 7.0e-10 69.3 59 54.2
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 5.9e-09 66.2 79 50.6
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 7.7e-09 65.9 166 32.5
Manes.08G044100 Manihot esculenta HOM05D014635 ORTHO05D014310 2.2e-08 64.3 199 31.2
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 3.8e-08 63.5 124 34.7
Potri.016G059400 Populus trichocarpa HOM05D014635 ORTHO05D014310 1.5e-07 61.6 136 35.3
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 9.4e-07 58.9 163 34.4
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.6e-06 58.2 113 36.3
QL07p024250 Quercus lobata HOM05D046221 ORTHO05D014310 1.6e-06 58.2 208 28.4
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 4.7e-06 56.6 177 28.2


User provided reference genes

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