Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 9.4e-278 959.5 476 100.0
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 8.1e-253 876.7 476 93.7
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 8.9e-252 873.2 484 90.7
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.3e-239 832.0 539 81.1
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 8.4e-234 813.5 406 98.0
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 2.9e-226 788.5 496 80.0
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 4.0e-220 768.1 494 78.3
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 2.6e-219 765.4 495 78.6
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 1.3e-218 763.1 494 77.9
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 2.3e-215 752.3 492 77.2
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.8e-213 745.3 488 75.6
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 1.4e-212 743.0 488 75.4
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.8e-212 742.7 497 75.5
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 6.9e-212 740.7 483 76.2
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 5.8e-211 737.6 486 74.7
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.2e-210 735.7 494 75.1
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 3.8e-210 734.9 489 75.3
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 3.8e-210 734.9 492 75.6
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 5.5e-209 731.1 493 75.7
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 9.3e-209 730.3 500 74.6
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 9.3e-209 730.3 468 75.9
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 2.7e-208 728.8 493 75.1
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 2.7e-208 728.8 490 73.9
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 4.6e-208 728.0 489 74.6
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 7.9e-208 727.2 447 78.3
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 1.0e-207 726.9 447 79.0
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.3e-207 726.5 492 74.8
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 6.7e-207 724.2 506 71.3
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 1.9e-206 722.6 478 75.5
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 4.3e-206 721.5 431 79.8
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 4.8e-205 718.0 501 72.5
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 4.8e-205 718.0 493 72.4
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 6.3e-205 717.6 437 79.4
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 1.1e-204 716.8 489 74.0
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 1.8e-204 716.1 538 69.5
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 1.8e-204 716.1 486 74.9
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 2.4e-204 715.7 493 72.8
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 3.1e-204 715.3 444 78.8
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 6.9e-204 714.1 490 72.4
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 9.0e-204 713.8 461 75.7
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 1.2e-203 713.4 476 75.4
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.5e-203 713.0 493 73.4
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.4e-203 711.8 487 73.3
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 3.4e-203 711.8 493 73.0
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 5.9e-203 711.1 462 75.8
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 5.9e-203 711.1 493 72.4
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 1.0e-202 710.3 469 74.4
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 3.8e-202 708.4 485 73.0
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 3.8e-202 708.4 493 72.0
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 6.5e-202 707.6 434 77.4
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.4e-201 706.4 449 77.3
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 7.2e-201 704.1 485 73.0
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 7.2e-201 704.1 476 73.7
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 9.3e-201 703.7 523 68.3
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 2.1e-200 702.6 445 76.2
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 2.7e-200 702.2 492 72.2
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 4.6e-200 701.4 431 78.9
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 6.1e-200 701.0 485 72.2
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 7.9e-200 700.7 493 72.4
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.0e-199 700.3 491 71.3
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 1.0e-199 700.3 493 70.8
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.8e-199 699.5 445 75.1
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 3.0e-199 698.7 490 71.2
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 3.0e-199 698.7 490 71.2
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 3.9e-199 698.4 493 72.8
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 5.1e-199 698.0 489 71.4
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 6.7e-199 697.6 441 76.4
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 1.1e-198 696.8 443 75.8
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 2.5e-198 695.7 495 70.1
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 2.5e-198 695.7 496 70.4
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 2.5e-198 695.7 438 76.0
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 4.3e-198 694.9 490 71.2
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 4.3e-198 694.9 490 71.2
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 1.6e-197 693.0 495 70.5
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 3.7e-197 691.8 430 77.4
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 6.3e-197 691.0 489 69.9
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 8.2e-197 690.6 458 72.9
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 1.1e-196 690.3 491 71.1
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 1.4e-196 689.9 493 69.6
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 3.4e-195 685.3 430 76.7
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.7e-194 682.9 447 76.1
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 5.0e-194 681.4 431 75.9
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 6.5e-194 681.0 489 71.4
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 1.9e-193 679.5 445 74.2
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 4.2e-193 678.3 447 74.0
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 9.4e-193 677.2 493 70.2
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 8.8e-191 670.6 468 71.6
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 6.3e-189 664.5 401 78.3
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.1e-185 653.7 405 76.8
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.9e-185 652.9 378 82.5
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 7.2e-185 651.0 444 70.9
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.0e-183 647.1 477 67.9
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 1.6e-179 633.3 429 71.1
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 2.6e-179 632.5 482 68.7
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 8.0e-176 620.9 378 78.0
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.4e-174 615.1 411 72.0
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 2.2e-173 612.8 431 71.5
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 5.3e-172 608.2 489 66.3
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 2.1e-168 596.3 448 65.8
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 3.6e-168 595.5 394 72.3
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 8.8e-167 590.9 481 64.2
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 1.7e-165 586.6 444 64.2
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 9.1e-164 580.9 341 80.1
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 5.5e-161 571.6 390 71.8
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.6e-160 568.9 378 73.5
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.1e-156 557.4 484 56.4
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 7.0e-156 554.7 490 58.6
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 1.7e-154 550.1 409 67.2
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 2.8e-152 542.7 380 71.6
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 1.2e-147 527.3 487 56.9
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 2.3e-143 513.1 326 76.7
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 5.0e-138 495.4 474 53.4
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 2.1e-123 446.8 256 80.9
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 9.9e-118 427.9 297 70.0
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 9.9e-118 427.9 297 70.0
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 1.9e-116 423.7 391 54.7
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 1.7e-109 400.6 348 60.6
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.2e-107 394.4 294 66.3
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 6.9e-103 378.6 270 69.6
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 1.2e-102 377.9 285 65.3
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 4.9e-101 372.5 264 69.3
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 6.4e-101 372.1 294 64.6
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 1.8e-90 337.4 384 46.6
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.6e-83 312.8 208 71.2
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 1.5e-78 297.7 335 45.4
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 2.7e-75 287.0 237 66.2
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 9.1e-71 271.9 581 32.7
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 3.9e-66 256.5 250 53.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.7e-48 198.0 519 31.0
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 1.8e-47 194.5 110 84.5
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.5e-36 157.5 109 66.1
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 5.6e-36 156.4 92 83.7
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 9.2e-31 139.0 97 64.9
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 1.3e-29 135.2 94 77.7
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 3.9e-21 107.1 74 68.9
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 1.6e-19 101.7 60 70.0
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 1.4e-18 98.6 69 68.1
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 1.4e-18 98.6 69 68.1
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 1.4e-18 98.6 69 68.1
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 1.8e-18 98.2 68 69.1
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 4.0e-18 97.1 106 50.9
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 5.2e-18 96.7 69 66.7
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 6.8e-18 96.3 70 65.7
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 8.9e-18 95.9 69 68.1
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 1.2e-17 95.5 69 65.2
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 1.5e-17 95.1 68 66.2
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 2.0e-17 94.7 69 65.2
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 2.0e-17 94.7 53 75.5
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.0e-13 80.9 69 60.9
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 5.6e-12 76.6 87 50.6
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 4.4e-09 67.0 45 73.3
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 1.6e-06 58.5 43 69.8
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 4.6e-06 57.0 59 49.2


User provided reference genes

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