Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3937 Fragaria x ananassa HOM05D006702 ORTHO05D008540 8.0e-103 377.1 189 100.0
FvH4_6g16390 Fragaria vesca HOM05D006702 ORTHO05D008540 2.9e-97 358.6 189 95.2
FAN14G1896 Fragaria x ananassa HOM05D006702 ORTHO05D008540 2.9e-97 358.6 189 95.2
RcHm_v2.0_Chr3g0470251 Rosa chinensis HOM05D006702 ORTHO05D008540 9.8e-77 290.4 177 85.3
FAN02G1423 Fragaria x ananassa HOM05D006702 ORTHO05D008540 9.5e-64 247.3 129 96.1
FAN05G1090 Fragaria x ananassa HOM05D006702 ORTHO05D008540 9.5e-64 247.3 129 96.1
Prupe.6G232200 Prunus persica HOM05D006702 ORTHO05D008540 3.4e-61 238.8 209 64.6
CiPaw.10G130200 Carya illinoinensis HOM05D006702 ORTHO05D008540 2.4e-59 232.6 161 72.0
QL07p043496 Quercus lobata HOM05D006702 ORTHO05D008540 3.9e-57 225.3 203 64.0
QL07p043331 Quercus lobata HOM05D006702 ORTHO05D008540 1.1e-56 223.8 196 64.3
CiPaw.10G130000 Carya illinoinensis HOM05D006702 ORTHO05D008540 9.5e-56 220.7 161 69.6
MD04G1093600 Malus domestica HOM05D006702 ORTHO05D008540 6.2e-55 218.0 201 64.7
Haze_20544 Corylus avellana HOM05D006702 ORTHO05D008540 1.5e-53 213.4 198 62.1
Haze_20547 Corylus avellana HOM05D006702 ORTHO05D008540 5.8e-53 211.5 199 61.3
CANSAT80G0135 Cannabis sativa HOM05D006702 ORTHO05D008540 4.3e-48 195.3 150 72.0
Duzib106G0264 Durio zibethinus HOM05D006702 ORTHO05D008540 3.1e-46 189.1 169 62.1
Thecc.05G066700 Theobroma cacao HOM05D006702 ORTHO05D008540 4.4e-45 185.3 154 66.2
MELO3C024465.2 Cucumis melo HOM05D006702 ORTHO05D008540 7.6e-45 184.5 193 56.0
Gohir.A04G072000 Gossypium hirsutum HOM05D006702 ORTHO05D008540 1.3e-44 183.7 159 64.2
TWI77G0937 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 6.4e-44 181.4 212 55.2
ClCG04G009300 Citrullus lanatus HOM05D006702 ORTHO05D008540 1.4e-43 180.3 152 63.8
Manes.09G067614 Manihot esculenta HOM05D006702 ORTHO05D008540 1.9e-43 179.9 139 68.3
Potri.016G093000 Populus trichocarpa HOM05D006702 ORTHO05D008540 4.2e-43 178.7 217 51.2
CsaV3_6G039890 Cucumis sativus L. HOM05D006702 ORTHO05D008540 7.1e-43 177.9 193 54.4
Gorai.009G414600 Gossypium raimondii HOM05D006702 ORTHO05D008540 7.1e-43 177.9 147 66.7
CSS0007009 Camellia sinensis var. sinensis HOM05D006702 ORTHO05D008540 6.0e-42 174.9 147 63.3
Gorai.006G163300 Gossypium raimondii HOM05D006702 ORTHO05D008540 1.3e-41 173.7 193 56.0
Gohir.D09G142300 Gossypium hirsutum HOM05D006702 ORTHO05D008540 3.9e-41 172.2 193 55.4
Nitab4.5_0008928g0010 Nicotiana tabacum HOM05D006702 ORTHO05D008540 1.1e-40 170.6 184 52.7
Oeu045060.1 Olea europaea HOM05D006702 ORTHO05D008540 3.3e-40 169.1 168 56.5
Nitab4.5_0000578g0200 Nicotiana tabacum HOM05D006702 ORTHO05D008540 7.3e-40 167.9 146 61.6
Gohir.D04G110501 Gossypium hirsutum HOM05D006702 ORTHO05D008540 9.6e-40 167.5 94 84.0
C03p01460 Brassica napus HOM05D006702 ORTHO05D008540 1.2e-39 167.2 180 57.2
GSVIVG01025733001 Vitis vinifera HOM05D006702 ORTHO05D008540 1.2e-39 167.2 106 74.5
Gohir.A09G146600 Gossypium hirsutum HOM05D006702 ORTHO05D008540 1.6e-39 166.8 185 55.7
Lalb_Chr06g0171741 Lupinus albus HOM05D006702 ORTHO05D008540 1.6e-39 166.8 173 55.5
Phvul.007G219250 Phaseolus vulgaris HOM05D006702 ORTHO05D008540 2.1e-39 166.4 133 66.9
Ciclev10012549m.g Citrus clementina HOM05D006702 ORTHO05D008540 3.6e-39 165.6 192 54.7
Atru.chr8.1809 Acer truncatum HOM05D006702 ORTHO05D008540 4.7e-39 165.2 140 64.3
BcaB01g05844 Brassica carinata HOM05D006702 ORTHO05D008540 8.1e-39 164.5 180 56.1
Actinidia32493 Actinidia chinensis HOM05D006702 ORTHO05D008540 1.1e-38 164.1 146 63.0
BolC3t12702H Brassica oleracea HOM05D006702 ORTHO05D008540 1.4e-38 163.7 179 55.3
Lj5g0016847 Lotus japonicus HOM05D006702 ORTHO05D008540 1.8e-38 163.3 115 70.4
VMungo0720G0934 Vigna mungo HOM05D006702 ORTHO05D008540 1.8e-38 163.3 99 77.8
Eucgr.K02933 Eucalyptus grandis HOM05D006702 ORTHO05D008540 3.1e-38 162.5 112 69.6
Duzib128G1950 Durio zibethinus HOM05D006702 ORTHO05D008540 5.3e-38 161.8 90 83.3
TWI53G0904 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 5.3e-38 161.8 106 72.6
Glyma.13G142500 Glycine max HOM05D006702 ORTHO05D008540 9.0e-38 161.0 115 73.0
MSTRG.10321 Avicennia marina HOM05D006702 ORTHO05D008540 2.0e-37 159.8 137 63.5
AT5G03370 Arabidopsis thaliana HOM05D006702 ORTHO05D008540 5.8e-37 158.3 149 57.0
Cc06_g04220 Coffea canephora HOM05D006702 ORTHO05D008540 1.7e-36 156.8 143 58.7
THA.LOC104823233 Tarenaya hassleriana HOM05D006702 ORTHO05D008540 1.7e-36 156.8 140 58.6
BraA03t09496Z Brassica rapa HOM05D006702 ORTHO05D008540 2.2e-36 156.4 181 53.6
Carub.0006s0219 Capsella rubella HOM05D006702 ORTHO05D008540 2.2e-36 156.4 200 52.5
Thhalv10003274m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 2.2e-36 156.4 185 53.0
AL6G12700 Arabidopsis lyrata HOM05D006702 ORTHO05D008540 2.9e-36 156.0 149 57.0
Sabra16G0098200 Salix brachista HOM05D006702 ORTHO05D008540 3.8e-36 155.6 99 75.8
Aa31LG1G21770 Aethionema arabicum HOM05D006702 ORTHO05D008540 4.9e-36 155.2 175 54.3
SGA_v2.0_scaffold224G42945 Striga asiatica HOM05D006702 ORTHO05D008540 4.9e-36 155.2 149 59.7
CiPaw.09G172500 Carya illinoinensis HOM05D006702 ORTHO05D008540 6.4e-36 154.8 108 70.4
PGR142G4417 Punica granatum HOM05D006702 ORTHO05D008540 6.4e-36 154.8 167 53.3
PGSC0003DMG400003886 Solanum tuberosum HOM05D006702 ORTHO05D008540 6.4e-36 154.8 91 80.2
TPR.G11275 Trifolium pratense HOM05D006702 ORTHO05D008540 8.4e-36 154.5 102 74.5
EL10Ac7g16628 Beta vulgaris HOM05D006702 ORTHO05D008540 1.4e-35 153.7 108 70.4
Cpa.g.sc54.80 Carica papaya HOM05D006702 ORTHO05D008540 1.4e-35 153.7 103 74.8
Migut.L01703 Erythranthe guttata HOM05D006702 ORTHO05D008540 1.4e-35 153.7 146 59.6
Sp6g39370 Schrenkiella parvula HOM05D006702 ORTHO05D008540 1.4e-35 153.7 143 59.4
Sed0024166 Sechium edule HOM05D006702 ORTHO05D008540 1.4e-35 153.7 160 57.5
Lj2P122T8 Lonicera japonica HOM05D006702 ORTHO05D008540 3.2e-35 152.5 89 80.9
Psat6g074160 Pisum sativum HOM05D006702 ORTHO05D008540 3.2e-35 152.5 103 72.8
A03p01140 Brassica napus HOM05D000070 ORTHO05D001255 4.2e-35 152.1 177 51.4
Medtr1g063240 Medicago truncatula HOM05D006702 ORTHO05D008540 4.2e-35 152.1 102 72.5
CARHR209960 Cardamine hirsuta HOM05D006702 ORTHO05D008540 5.4e-35 151.8 172 54.1
Solyc09g008190.3 Solanum lycopersicum HOM05D006702 ORTHO05D008540 9.3e-35 151.0 99 72.7
Nn2g13794 Nelumbo nucifera HOM05D006702 ORTHO05D008540 1.6e-34 150.2 189 49.2
Nn2g13797 Nelumbo nucifera HOM05D006702 ORTHO05D008540 1.6e-34 150.2 189 49.2
ECA233G1636 Erigeron canadensis HOM05D006702 ORTHO05D008540 2.1e-34 149.8 107 67.3
Sc02g0001610 Simmondsia chinensis HOM05D006702 ORTHO05D008540 2.1e-34 149.8 150 56.7
CAN.G900.34 Capsicum annuum HOM05D006702 ORTHO05D008540 2.7e-34 149.4 137 57.7
Sopen09g002990 Solanum pennellii HOM05D006702 ORTHO05D008540 6.0e-34 148.3 123 62.6
Thhalv10014711m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 3.0e-33 146.0 99 70.7
AUR62040349 Chenopodium quinoa HOM05D006702 ORTHO05D008540 5.1e-33 145.2 136 60.3
Thhalv10029095m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 8.7e-33 144.4 89 74.2
Ca_11502_v3 Cicer arietinum L. HOM05D006702 ORTHO05D008540 1.5e-32 143.7 107 68.2
PSO339G3061 Papaver somniferum HOM05D006702 ORTHO05D008540 3.3e-32 142.5 128 57.0
TAR369G0293 Trochodendron aralioides HOM05D006702 ORTHO05D008540 4.3e-32 142.1 89 73.0
AUR62042500 Chenopodium quinoa HOM05D006702 ORTHO05D008540 1.6e-31 140.2 89 75.3
DCAR_020817 Daucus carota HOM05D006702 ORTHO05D008540 2.1e-31 139.8 99 66.7
ATR0171G014 Amborella trichopoda HOM05D006702 ORTHO05D008540 1.1e-30 137.5 91 70.3
Aqoxy2G01772 Aquilegia oxysepala HOM05D006702 ORTHO05D008540 1.1e-30 137.5 94 71.3
Lalb_Chr24g0398871 Lupinus albus HOM05D006702 ORTHO05D008540 2.6e-29 132.9 98 63.3
CDE05G1201 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 3.4e-29 132.5 106 60.4
Hma1.2p1_0205F.1_g087030 Hydrangea macrophylla HOM05D006702 ORTHO05D008540 2.2e-28 129.8 177 46.3
Lsat_1_v5_gn_6_25081 Lactuca sativa HOM05D006702 ORTHO05D008540 2.2e-28 129.8 116 56.0
arahy.Tifrunner.gnm1.ann1.C2LQEN Arachis hypogaea HOM05D006702 ORTHO05D008540 2.4e-27 126.3 76 78.9
arahy.Tifrunner.gnm1.ann1.NQ6TBI Arachis hypogaea HOM05D006702 ORTHO05D008540 2.4e-27 126.3 76 78.9
CARHR118060 Cardamine hirsuta HOM05D006702 ORTHO05D008540 2.4e-27 126.3 89 66.3
Hund25533 Selenicereus undatus HOM05D006702 ORTHO05D008540 7.1e-27 124.8 125 56.0
Potri.006G124966 Populus trichocarpa HOM05D006702 ORTHO05D008540 9.3e-27 124.4 106 62.3
DCAR_014995 Daucus carota HOM05D006702 ORTHO05D008540 1.2e-26 124.0 91 63.7
SEGI_37807 Sequoiadendron giganteum HOM05D006702 ORTHO05D008540 2.1e-26 123.2 113 53.1
CAN.G900.33 Capsicum annuum HOM05D006702 ORTHO05D008540 1.3e-25 120.6 94 60.6
Peaxi162Scf01139g00005 Petunia axillaris HOM05D006702 ORTHO05D008540 1.5e-24 117.1 97 59.8
Nitab4.5_0008928g0020 Nicotiana tabacum HOM05D006702 ORTHO05D008540 4.3e-24 115.5 97 58.8
Mapoly0013s0202 Marchantia polymorpha HOM05D006702 ORTHO05D008540 8.1e-23 111.3 112 48.2
Zm00001eb380050 Zea mays HOM05D006702 ORTHO05D008540 3.1e-22 109.4 116 52.6
AagrBONN_evm.TU.Sc2ySwM_368.2290 Anthoceros agrestis HOM05D006702 ORTHO05D008540 3.4e-21 105.9 100 53.0
unitig_0.g683 Utricularia gibba HOM05D006702 ORTHO05D008540 3.4e-21 105.9 109 53.2
Pp3c18_4750 Physcomitrium patens HOM05D006702 ORTHO05D008540 2.2e-20 103.2 108 50.0
SMO137G0384 Selaginella moellendorffii HOM05D006702 ORTHO05D008540 2.2e-20 103.2 87 56.3
AagrBONN_evm.TU.Sc2ySwM_362.139 Anthoceros agrestis HOM05D006702 ORTHO05D008540 3.8e-20 102.4 104 48.1
Zm00001eb380040 Zea mays HOM05D006702 ORTHO05D008540 3.2e-19 99.4 108 52.8
Os06g0264700 Oryza sativa ssp. japonica HOM05D006702 ORTHO05D008540 2.1e-18 96.7 130 48.5
Pp3c1_15300 Physcomitrium patens HOM05D006702 ORTHO05D008540 5.6e-16 88.6 89 46.1
MSTRG.19178 Avicennia marina HOM05D006702 ORTHO05D008540 9.3e-11 71.2 142 38.7
Pp3c5_16270 Physcomitrium patens HOM05D006702 ORTHO05D008540 1.1e-08 64.3 84 36.9
QL07p043329 Quercus lobata HOM05D006702 ORTHO05D008540 1.1e-08 64.3 117 50.4
Sabra06G0098700 Salix brachista HOM05D000002 ORTHO05D000047 1.5e-08 63.9 50 66.0
CDE05G1088 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 5.7e-08 62.0 40 70.0
CiPaw.10G130100 Carya illinoinensis HOM05D006702 ORTHO05D127951 1.4e-06 57.4 84 46.4
VMungo1215G2316 Vigna mungo HOM05D017790 ORTHO05D002759 6.9e-06 55.1 49 49.0


User provided reference genes

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