Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 4.6e-155 551.2 283 100.0
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.1e-151 540.0 281 98.2
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 5.3e-151 537.7 281 97.9
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 2.1e-147 525.8 279 96.1
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 5.7e-129 464.5 280 85.0
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 1.3e-128 463.4 282 83.3
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 6.1e-115 417.9 279 76.0
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 1.4e-111 406.8 278 74.8
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 2.6e-110 402.5 287 72.1
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 6.5e-109 397.9 280 72.5
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 8.5e-109 397.5 283 71.7
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 7.2e-108 394.4 281 71.2
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 8.0e-107 391.0 283 71.0
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 1.8e-106 389.8 286 70.6
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 3.0e-106 389.0 282 69.1
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 5.7e-105 384.8 282 70.2
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 2.8e-104 382.5 251 75.7
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 6.3e-104 381.3 280 68.9
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 2.0e-102 376.3 278 69.4
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 1.0e-101 374.0 278 70.1
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 2.9e-101 372.5 278 68.7
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 9.4e-100 367.5 267 71.9
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 1.2e-99 367.1 263 71.9
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 1.6e-99 366.7 285 68.8
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 4.7e-99 365.2 282 68.8
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 1.4e-98 363.6 280 66.8
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 1.8e-98 363.2 267 71.2
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 4.0e-98 362.1 268 70.5
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 5.2e-98 361.7 246 74.4
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 2.6e-97 359.4 283 68.2
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 2.6e-97 359.4 278 68.7
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 3.4e-97 359.0 267 68.5
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 5.7e-97 358.2 265 71.3
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 9.8e-97 357.5 278 66.9
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 3.7e-96 355.5 271 67.2
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 4.8e-96 355.1 282 67.7
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 9.1e-95 350.9 225 78.7
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 1.6e-94 350.1 279 66.7
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 2.7e-94 349.4 242 73.1
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 5.9e-94 348.2 250 69.2
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 1.3e-93 347.1 230 74.3
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 2.3e-93 346.3 247 71.7
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 6.5e-93 344.7 236 73.7
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 1.5e-92 343.6 261 68.2
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 4.2e-92 342.0 237 70.5
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 5.5e-92 341.7 260 68.8
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 2.1e-91 339.7 243 71.2
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 2.1e-91 339.7 371 53.6
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 3.6e-91 339.0 233 72.5
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 8.0e-91 337.8 224 73.2
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 8.0e-91 337.8 230 74.8
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 1.0e-90 337.4 233 72.5
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 1.8e-90 336.7 234 71.4
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 3.0e-90 335.9 264 65.5
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 8.9e-90 334.3 226 74.8
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 1.5e-89 333.6 243 68.7
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 4.4e-89 332.0 252 68.3
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 1.7e-88 330.1 264 64.0
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 2.8e-88 329.3 288 61.5
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 8.3e-88 327.8 254 68.1
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 8.3e-88 327.8 240 70.8
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 7.0e-87 324.7 274 63.1
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 7.0e-87 324.7 257 65.0
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 2.0e-86 323.2 243 69.1
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 1.0e-85 320.9 264 61.7
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 1.3e-85 320.5 230 69.1
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 6.6e-85 318.2 292 58.6
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 6.6e-85 318.2 249 65.5
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 8.6e-85 317.8 273 61.2
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.9e-84 316.6 227 69.2
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 5.6e-84 315.1 242 67.8
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 9.5e-84 314.3 247 64.0
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 1.0e-82 310.8 300 57.3
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 1.8e-82 310.1 231 70.6
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 2.2e-80 303.1 192 76.6
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 7.0e-79 298.1 243 60.9
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 9.2e-79 297.7 249 62.7
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 2.7e-78 296.2 183 81.4
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 4.6e-78 295.4 279 58.8
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 7.8e-78 294.7 246 65.0
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 3.4e-73 279.3 197 70.6
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 3.7e-72 275.8 249 60.6
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 3.3e-68 262.7 242 57.4
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.3e-68 262.7 201 72.1
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 2.1e-67 260.0 248 57.7
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 8.1e-67 258.1 221 64.3
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 3.2e-63 246.1 248 52.0
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 3.2e-63 246.1 237 53.6
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 7.1e-63 245.0 181 65.7
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 3.3e-60 236.1 421 39.2
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 3.3e-60 236.1 267 50.9
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 6.2e-59 231.9 191 64.4
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 1.1e-58 231.1 196 61.2
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 1.4e-58 230.7 146 77.4
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 9.9e-57 224.6 152 73.7
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 8.4e-56 221.5 202 53.0
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 1.4e-50 204.1 153 66.0
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 1.5e-44 184.1 150 61.3
FAN09G2218 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.2e-39 166.4 90 94.4
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 4.3e-36 156.0 178 51.7
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 7.6e-33 145.2 145 47.6
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 7.9e-30 135.2 94 67.0
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 9.6e-28 128.3 88 76.1
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 2.4e-26 123.6 273 33.7
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 2.3e-21 107.1 62 83.9
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 3.3e-20 103.2 204 35.3
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 2.7e-14 83.6 62 72.6
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 7.9e-14 82.0 40 97.5
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 3.0e-13 80.1 41 92.7
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 6.3e-11 72.4 113 38.9
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 6.9e-10 68.9 222 30.6
Mapoly0070s0031 Marchantia polymorpha HOM05D002234 ORTHO05D002254 4.5e-09 66.2 235 28.5
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 5.9e-09 65.9 234 29.9
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 5.9e-09 65.9 234 29.9
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 5.9e-09 65.9 223 29.6
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 1.3e-08 64.7 222 29.7
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 1.3e-08 64.7 222 29.7
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 5.0e-08 62.8 234 29.5
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 1.4e-07 61.2 176 30.1
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 1.9e-07 60.8 218 29.4
AL3G38060 Arabidopsis lyrata HOM05D006432 ORTHO05D008257 3.2e-07 60.1 218 28.9
PSO210G7268 Papaver somniferum HOM05D002234 ORTHO05D002254 3.2e-07 60.1 245 24.1
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 3.2e-07 60.1 236 27.5
Aa31LG8G9890 Aethionema arabicum HOM05D006432 ORTHO05D008257 7.2e-07 58.9 231 28.1
AT3G23400 Arabidopsis thaliana HOM05D006432 ORTHO05D008257 7.2e-07 58.9 218 28.9
CARHR099370 Cardamine hirsuta HOM05D006432 ORTHO05D008257 9.4e-07 58.5 220 27.7
THA.LOC104804760 Tarenaya hassleriana HOM05D006432 ORTHO05D008257 1.6e-06 57.8 220 27.3
SMO141G0176 Selaginella moellendorffii HOM05D006432 ORTHO05D008257 4.7e-06 56.2 262 27.1


User provided reference genes

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