Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3914 Fragaria x ananassa HOM05D000439 ORTHO05D006172 5.5e-84 314.3 165 100.0
FAN07G0650 Fragaria x ananassa HOM05D000439 ORTHO05D006172 8.3e-64 247.3 138 96.4
FAN09G4271 Fragaria x ananassa HOM05D000643 ORTHO05D006172 1.8e-63 246.1 131 100.0
FAN17G2341 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.8e-63 246.1 138 95.7
FAN22G2148 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.8e-63 246.1 138 95.7
FvH4_4g15550 Fragaria vesca HOM05D000439 ORTHO05D006172 4.6e-62 241.5 138 94.2
FAN12G2572 Fragaria x ananassa HOM05D000439 ORTHO05D006172 4.6e-62 241.5 138 94.2
RcHm_v2.0_Chr4g0416211 Rosa chinensis HOM05D000439 ORTHO05D006172 1.1e-60 236.9 138 91.3
FAN12G1418 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.4e-58 229.9 129 94.6
Prupe.1G013700 Prunus persica HOM05D000439 ORTHO05D006172 2.8e-51 205.7 138 79.0
MD13G1193100 Malus domestica HOM05D000439 ORTHO05D006172 4.0e-50 201.8 140 75.7
MD16G1194000 Malus domestica HOM05D000439 ORTHO05D006172 1.2e-49 200.3 140 75.7
CiPaw.01G166100 Carya illinoinensis HOM05D000439 ORTHO05D006172 3.1e-42 175.6 140 65.7
Cfa015646 Carpinus fangiana HOM05D000439 ORTHO05D006172 5.2e-42 174.9 138 66.7
Haze_00899 Corylus avellana HOM05D000439 ORTHO05D006172 5.2e-42 174.9 138 65.9
ClCG06G006240 Citrullus lanatus HOM05D000439 ORTHO05D006172 1.5e-41 173.3 150 61.3
CsaV3_7G022490 Cucumis sativus L. HOM05D000439 ORTHO05D006172 2.0e-41 172.9 150 61.3
QL06p002460 Quercus lobata HOM05D000439 ORTHO05D006172 2.6e-41 172.6 140 65.7
MELO3C012651.2 Cucumis melo HOM05D000439 ORTHO05D006172 3.4e-41 172.2 138 64.5
CANSAT78G0526 Cannabis sativa HOM05D000439 ORTHO05D006172 3.2e-39 165.6 138 65.2
Sed0018003 Sechium edule HOM05D000439 ORTHO05D006172 3.2e-39 165.6 150 59.3
TAR365G0584 Trochodendron aralioides HOM05D000439 ORTHO05D006172 5.4e-39 164.9 150 62.0
FAN10G0520 Fragaria x ananassa HOM05D000439 ORTHO05D006172 2.1e-38 162.9 89 97.8
Dinv13996 Davidia involucrata HOM05D000439 ORTHO05D006172 3.5e-38 162.2 133 64.7
TAR636G3313 Trochodendron aralioides HOM05D000439 ORTHO05D006172 1.5e-36 156.8 150 58.0
Cpa.g.sc58.106 Carica papaya HOM05D000439 ORTHO05D006172 7.3e-36 154.5 142 60.6
Hund12129 Selenicereus undatus HOM05D000439 ORTHO05D006172 2.1e-35 152.9 131 60.3
Aqoxy5G00467 Aquilegia oxysepala HOM05D000439 ORTHO05D006172 3.6e-35 152.1 140 60.0
AUR62034747 Chenopodium quinoa HOM05D000439 ORTHO05D006172 3.6e-35 152.1 138 60.1
Eucgr.H03480 Eucalyptus grandis HOM05D000439 ORTHO05D006172 3.6e-35 152.1 136 59.6
Manes.15G029200 Manihot esculenta HOM05D000439 ORTHO05D006172 4.7e-35 151.8 131 61.8
AUR62033634 Chenopodium quinoa HOM05D000439 ORTHO05D006172 8.1e-35 151.0 138 59.4
THA.LOC104803025 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 1.8e-34 149.8 143 56.6
Ah.04g154630 Amaranthus hybridus HOM05D000439 ORTHO05D006172 3.1e-34 149.1 138 60.1
Lsat_1_v5_gn_7_67240 Lactuca sativa HOM05D000439 ORTHO05D006172 5.2e-34 148.3 140 58.6
Manes.03G178500 Manihot esculenta HOM05D000439 ORTHO05D006172 6.9e-34 147.9 131 61.1
Aa31LG8G9010 Aethionema arabicum HOM05D000439 ORTHO05D006172 8.9e-34 147.5 142 55.6
EL10As3g23288 Beta vulgaris HOM05D000439 ORTHO05D006172 8.9e-34 147.5 134 61.2
Thhalv10020440m.g Eutrema salsugineum HOM05D000439 ORTHO05D006172 8.9e-34 147.5 143 56.6
Sabra08G0116600 Salix brachista HOM05D000439 ORTHO05D006172 8.9e-34 147.5 131 60.3
AL3G36750 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 1.2e-33 147.1 143 55.9
Potri.008G153000 Populus trichocarpa HOM05D000439 ORTHO05D006172 1.2e-33 147.1 131 60.3
TWI73G0578 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 1.5e-33 146.7 144 56.2
Medtr1g103710 Medicago truncatula HOM05D000439 ORTHO05D006172 2.0e-33 146.4 140 56.4
TWI09G0034 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 2.0e-33 146.4 144 58.3
CARHR221480 Cardamine hirsuta HOM05D000439 ORTHO05D006172 2.6e-33 146.0 144 54.9
Duzib212G0312 Durio zibethinus HOM05D000439 ORTHO05D006172 2.6e-33 146.0 138 56.5
Sp3g20210 Schrenkiella parvula HOM05D000439 ORTHO05D006172 3.4e-33 145.6 142 55.6
THA.LOC104809078 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 3.4e-33 145.6 142 56.3
Carub.0003s2262 Capsella rubella HOM05D000439 ORTHO05D006172 4.4e-33 145.2 145 54.5
Gorai.005G042900 Gossypium raimondii HOM05D000439 ORTHO05D006172 4.4e-33 145.2 138 56.5
Gohir.A09G215900 Gossypium hirsutum HOM05D000439 ORTHO05D006172 5.8e-33 144.8 138 54.3
Gohir.D09G218300 Gossypium hirsutum HOM05D000439 ORTHO05D006172 5.8e-33 144.8 138 54.3
Gorai.006G239300 Gossypium raimondii HOM05D000439 ORTHO05D006172 5.8e-33 144.8 138 54.3
TPR.G5544 Trifolium pratense HOM05D000439 ORTHO05D006172 9.9e-33 144.1 142 54.9
TWI53G0069 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 9.9e-33 144.1 144 56.2
BcaB04g20517 Brassica carinata HOM05D000439 ORTHO05D006172 1.3e-32 143.7 140 57.9
Gohir.A02G032200 Gossypium hirsutum HOM05D000439 ORTHO05D006172 1.3e-32 143.7 138 55.8
AT3G22440 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 1.7e-32 143.3 144 54.2
Duzib052G0960 Durio zibethinus HOM05D000439 ORTHO05D006172 1.7e-32 143.3 141 52.5
BcaC09g49175 Brassica carinata HOM05D000439 ORTHO05D006172 2.2e-32 142.9 140 57.9
C01p41830 Brassica napus HOM05D000439 ORTHO05D006172 2.2e-32 142.9 140 57.9
BolC1t04137H Brassica oleracea HOM05D000439 ORTHO05D006172 2.2e-32 142.9 140 57.9
Thhalv10024868m.g Eutrema salsugineum HOM05D000439 ORTHO05D006172 2.2e-32 142.9 142 55.6
AT4G14900 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 2.9e-32 142.5 140 53.6
CARHR098350 Cardamine hirsuta HOM05D000439 ORTHO05D006172 2.9e-32 142.5 153 52.3
Lsat_1_v5_gn_9_80141 Lactuca sativa HOM05D000439 ORTHO05D006172 2.9e-32 142.5 140 58.6
Rhsim02G0025300 Rhododendron simsii HOM05D000439 ORTHO05D006172 2.9e-32 142.5 154 52.6
THA.LOC104822271 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 2.9e-32 142.5 142 54.2
Nn1g02321 Nelumbo nucifera HOM05D000439 ORTHO05D006172 8.4e-32 141.0 147 51.7
PGR004G1056 Punica granatum HOM05D000439 ORTHO05D006172 1.1e-31 140.6 141 55.3
AL7G40950 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 1.4e-31 140.2 140 51.4
CSS0012474 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 1.9e-31 139.8 131 58.0
Psat6g207360 Pisum sativum HOM05D000439 ORTHO05D006172 2.4e-31 139.4 142 53.5
Sopen09g030890 Solanum pennellii HOM05D000439 ORTHO05D006172 2.4e-31 139.4 138 57.2
Lj5g0001183 Lotus japonicus HOM05D000439 ORTHO05D006172 4.2e-31 138.7 139 56.1
PGSC0003DMG400030083 Solanum tuberosum HOM05D000439 ORTHO05D006172 5.4e-31 138.3 138 56.5
Solyc09g076050.4 Solanum lycopersicum HOM05D000439 ORTHO05D006172 7.1e-31 137.9 138 56.5
arahy.Tifrunner.gnm1.ann1.JR532J Arachis hypogaea HOM05D000439 ORTHO05D006172 9.3e-31 137.5 141 53.2
arahy.Tifrunner.gnm1.ann1.Y59G7X Arachis hypogaea HOM05D000439 ORTHO05D006172 9.3e-31 137.5 141 53.2
Peaxi162Scf00092g01013 Petunia axillaris HOM05D000439 ORTHO05D006172 9.3e-31 137.5 145 55.2
A01p32650 Brassica napus HOM05D000439 ORTHO05D006172 2.7e-30 136.0 142 54.9
Atru.chr4.2461 Acer truncatum HOM05D000439 ORTHO05D006172 6.0e-30 134.8 141 51.8
CSS0007127 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 7.8e-30 134.4 122 59.8
Sp7g13040 Schrenkiella parvula HOM05D000439 ORTHO05D006172 1.0e-29 134.0 144 50.0
Ciclev10004753m.g Citrus clementina HOM05D000439 ORTHO05D006172 1.3e-29 133.7 131 54.2
HanXRQChr06g0181431 Helianthus annuus HOM05D000439 ORTHO05D006172 1.7e-29 133.3 140 56.4
COL.COLO4_21479 Corchorus olitorius HOM05D000439 ORTHO05D006172 3.0e-29 132.5 143 51.7
Carub.0007s2721 Capsella rubella HOM05D000439 ORTHO05D006172 5.1e-29 131.7 146 50.0
Hma1.2p1_0602F.1_g187340 Hydrangea macrophylla HOM05D000439 ORTHO05D006172 5.1e-29 131.7 139 52.5
Nitab4.5_0004258g0030 Nicotiana tabacum HOM05D000439 ORTHO05D006172 5.1e-29 131.7 138 54.3
PSO210G3898 Papaver somniferum HOM05D000439 ORTHO05D006172 1.1e-28 130.6 143 51.7
BraA01t03393Z Brassica rapa HOM05D000439 ORTHO05D006172 1.5e-28 130.2 142 53.5
PSO832G2628 Papaver somniferum HOM05D000439 ORTHO05D006172 2.5e-28 129.4 143 51.7
CAN.G490.11 Capsicum annuum HOM05D000439 ORTHO05D006172 3.3e-28 129.0 138 51.4
Nitab4.5_0000043g0100 Nicotiana tabacum HOM05D000439 ORTHO05D006172 3.3e-28 129.0 138 52.9
Phvul.007G057500 Phaseolus vulgaris HOM05D000439 ORTHO05D006172 4.3e-28 128.6 131 50.4
Glyma.20G146100 Glycine max HOM05D000439 ORTHO05D006172 7.3e-28 127.9 132 52.3
BcaC05g28068 Brassica carinata HOM05D000439 ORTHO05D006172 9.6e-28 127.5 142 51.4
C05p40900 Brassica napus HOM05D000439 ORTHO05D006172 9.6e-28 127.5 142 51.4
BolC5t32832H Brassica oleracea HOM05D000439 ORTHO05D006172 9.6e-28 127.5 142 51.4
Thecc.04G232100 Theobroma cacao HOM05D000439 ORTHO05D006172 1.6e-27 126.7 138 51.4
SHI00449 Sapria himalayana HOM05D000439 ORTHO05D006172 4.8e-27 125.2 128 50.8
Ca_10896_v3 Cicer arietinum L. HOM05D000439 ORTHO05D006172 6.2e-27 124.8 141 51.1
DCAR_027218 Daucus carota HOM05D000439 ORTHO05D006172 6.2e-27 124.8 131 51.9
SGA_v2.0_scaffold550G52866 Striga asiatica HOM05D000439 ORTHO05D006172 8.1e-27 124.4 135 51.1
MSTRG.24741 Avicennia marina HOM05D000439 ORTHO05D006172 6.9e-26 121.3 135 51.1
Oeu031230.1 Olea europaea HOM05D000439 ORTHO05D006172 9.0e-26 120.9 154 43.5
Oeu050279.2 Olea europaea HOM05D000439 ORTHO05D006172 1.2e-25 120.6 154 43.5
Migut.N00184 Erythranthe guttata HOM05D000439 ORTHO05D006172 2.0e-25 119.8 151 46.4
Rhsim04G0202100 Rhododendron simsii HOM05D000439 ORTHO05D006172 4.5e-25 118.6 131 51.9
MBI11_g31279_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D006172 5.8e-25 118.2 142 47.2
Sc25g0004360 Simmondsia chinensis HOM05D000439 ORTHO05D006172 2.2e-24 116.3 136 49.3
SGA_v2.0_scaffold166G38355 Striga asiatica HOM05D000439 ORTHO05D006172 2.9e-24 115.9 134 48.5
Lj3C734T11 Lonicera japonica HOM05D000439 ORTHO05D006172 4.9e-24 115.2 132 56.1
Manes.02G074901 Manihot esculenta HOM05D000439 ORTHO05D006172 8.4e-24 114.4 126 54.0
VMungo0720G0964 Vigna mungo HOM05D000439 ORTHO05D006172 8.4e-24 114.4 131 46.6
FAN16G2443 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.1e-23 114.0 58 98.3
Nn4g26325 Nelumbo nucifera HOM05D000439 ORTHO05D006172 1.4e-23 113.6 113 53.1
Sc19g0004140 Simmondsia chinensis HOM05D000439 ORTHO05D006172 4.2e-23 112.1 131 51.1
unitig_26.g10518 Utricularia gibba HOM05D000439 ORTHO05D006172 5.4e-23 111.7 147 42.9
Gohir.D02G038900 Gossypium hirsutum HOM05D000439 ORTHO05D006172 1.2e-22 110.5 138 47.1
ECA240G1807 Erigeron canadensis HOM05D000439 ORTHO05D006172 1.3e-21 107.1 138 44.9
Glyma.10G248000 Glycine max HOM05D000439 ORTHO05D006172 1.3e-21 107.1 135 47.4
ECA240G1500 Erigeron canadensis HOM05D000439 ORTHO05D006172 1.8e-21 106.7 138 44.9
Actinidia23511 Actinidia chinensis HOM05D000439 ORTHO05D006172 2.1e-19 99.8 138 43.5
Os03g0794900 Oryza sativa ssp. japonica HOM05D000439 ORTHO05D006172 1.5e-17 93.6 138 39.1
Lalb_Chr21g0304711 Lupinus albus HOM05D000439 ORTHO05D006172 1.1e-15 87.4 104 43.3
ATR0697G242 Amborella trichopoda HOM05D000439 ORTHO05D006172 9.3e-15 84.3 118 38.1
TAR636G1267 Trochodendron aralioides HOM05D000439 ORTHO05D009874 6.0e-14 81.6 131 40.5
BraA05t21505Z Brassica rapa HOM05D000439 ORTHO05D006172 1.0e-13 80.9 107 44.9
TAR624G0363 Trochodendron aralioides HOM05D000439 ORTHO05D009874 1.8e-13 80.1 131 38.9
HPP92_012138 Vanilla planifolia HOM05D000439 ORTHO05D006172 2.3e-13 79.7 146 34.9
Nn2g11770 Nelumbo nucifera HOM05D000439 ORTHO05D009874 3.0e-13 79.3 132 38.6
Zm00001eb301060 Zea mays HOM05D000439 ORTHO05D006172 2.5e-12 76.3 64 53.1
Os07g0173200 Oryza sativa ssp. japonica HOM05D000439 ORTHO05D006172 3.3e-12 75.9 65 49.2
Aqoxy7G03789 Aquilegia oxysepala HOM05D000439 ORTHO05D009874 3.7e-11 72.4 131 35.9
Zm00001eb117030 Zea mays HOM05D000439 ORTHO05D006172 3.7e-11 72.4 58 53.4
Actinidia40144 Actinidia chinensis HOM05D000439 ORTHO05D006172 6.2e-11 71.6 90 46.7
FAN23G0749 Fragaria x ananassa HOM05D000439 ORTHO05D009874 3.1e-10 69.3 127 37.8
Phvul.002G313900 Phaseolus vulgaris HOM05D000439 ORTHO05D009874 5.3e-10 68.6 124 36.3
Glyma.05G231700 Glycine max HOM05D000439 ORTHO05D009874 6.9e-10 68.2 109 38.5
VMungo0251G2870 Vigna mungo HOM05D000439 ORTHO05D009874 9.0e-10 67.8 124 36.3
TWI34G1498 Tripterygium wilfordii HOM05D000439 ORTHO05D009874 1.2e-09 67.4 124 33.1
ATR1120G089 Amborella trichopoda HOM05D000439 ORTHO05D009874 2.0e-09 66.6 126 34.9
PSO063G1966 Papaver somniferum HOM05D000439 ORTHO05D009874 2.6e-09 66.2 131 31.3
RcHm_v2.0_Chr2g0090711 Rosa chinensis HOM05D000439 ORTHO05D009874 4.5e-09 65.5 122 36.9
CDE07G0898 Ceratophyllum demersum HOM05D000439 ORTHO05D006172 5.8e-09 65.1 65 47.7
Potri.018G078701 Populus trichocarpa HOM05D000439 ORTHO05D009874 5.8e-09 65.1 107 37.4
Glyma.08G039100 Glycine max HOM05D000439 ORTHO05D009874 7.6e-09 64.7 124 34.7
CSS0019665 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D009874 1.0e-08 64.3 124 33.9
Ah.10g028890 Amaranthus hybridus HOM05D000439 ORTHO05D009874 1.3e-08 63.9 124 34.7
CDE04G3570 Ceratophyllum demersum HOM05D000439 ORTHO05D006172 1.3e-08 63.9 65 46.2
Haze_25703 Corylus avellana HOM05D000439 ORTHO05D009874 1.7e-08 63.5 109 35.8
EL10Ac8g18511 Beta vulgaris HOM05D000439 ORTHO05D009874 2.2e-08 63.2 130 31.5
MD15G1187200 Malus domestica HOM05D000439 ORTHO05D009874 2.9e-08 62.8 108 38.0
vmacro05352 Vaccinium macrocarpon HOM05D000439 ORTHO05D009874 2.9e-08 62.8 126 31.0
CiPaw.03G233300 Carya illinoinensis HOM05D000439 ORTHO05D009874 3.8e-08 62.4 109 39.4
Sabra18G0066700 Salix brachista HOM05D000439 ORTHO05D009874 3.8e-08 62.4 107 37.4
AUR62011007 Chenopodium quinoa HOM05D000439 ORTHO05D009874 6.5e-08 61.6 85 41.2
COL.COLO4_34901 Corchorus olitorius HOM05D000439 ORTHO05D009874 6.5e-08 61.6 109 34.9
CDE07G1583 Ceratophyllum demersum HOM05D000439 ORTHO05D009874 1.1e-07 60.8 124 34.7
Psat7g013680 Pisum sativum HOM05D000439 ORTHO05D009874 1.1e-07 60.8 117 34.2
TWI63G1161 Tripterygium wilfordii HOM05D000439 ORTHO05D009874 1.1e-07 60.8 107 36.4
CDE06G2587 Ceratophyllum demersum HOM05D000439 ORTHO05D009874 1.9e-07 60.1 124 33.9
Hund26144 Selenicereus undatus HOM05D000439 ORTHO05D009874 1.9e-07 60.1 105 32.4
Eucgr.C01055 Eucalyptus grandis HOM05D000439 ORTHO05D009874 2.5e-07 59.7 131 33.6
Atru.chr7.1332 Acer truncatum HOM05D000439 ORTHO05D009874 3.2e-07 59.3 124 31.5
FAN28G0603 Fragaria x ananassa HOM05D000439 ORTHO05D009874 3.2e-07 59.3 112 37.5
Lalb_Chr05g0222771 Lupinus albus HOM05D000439 ORTHO05D009874 3.2e-07 59.3 118 33.9
SEGI_28702 Sequoiadendron giganteum HOM05D000439 ORTHO05D006172 3.2e-07 59.3 85 35.3
AUR62021518 Chenopodium quinoa HOM05D000439 ORTHO05D009874 4.2e-07 58.9 99 37.4
Manes.03G019300 Manihot esculenta HOM05D000439 ORTHO05D009874 5.5e-07 58.5 88 39.8
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.1e-07 58.2 43 60.5
Duzib187G1055 Durio zibethinus HOM05D000439 ORTHO05D009874 2.1e-06 56.6 124 30.6
FvH4_1g05070 Fragaria vesca HOM05D000439 ORTHO05D009874 2.1e-06 56.6 112 35.7
CANSAT56G0657 Cannabis sativa HOM05D000439 ORTHO05D009874 2.7e-06 56.2 109 30.3
FAN26G1741 Fragaria x ananassa HOM05D000439 ORTHO05D009874 2.7e-06 56.2 112 36.6
Lj4g0010983 Lotus japonicus HOM05D000439 ORTHO05D009874 2.7e-06 56.2 107 32.7
Lalb_Chr09g0331151 Lupinus albus HOM05D000439 ORTHO05D009874 3.5e-06 55.8 124 34.7
Prupe.7G229200 Prunus persica HOM05D000439 ORTHO05D009874 3.5e-06 55.8 107 34.6
FAN19G0670 Fragaria x ananassa HOM05D000439 ORTHO05D009874 4.6e-06 55.5 108 34.3
QL02p085596 Quercus lobata HOM05D000439 ORTHO05D009874 7.9e-06 54.7 100 36.0
Thecc.09G112300 Theobroma cacao HOM05D000439 ORTHO05D009874 7.9e-06 54.7 109 33.9


User provided reference genes

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