Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.8e-88 328.2 170 100.0
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.2e-71 270.8 180 82.2
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 8.5e-64 247.3 183 76.5
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.8e-60 233.8 182 75.3
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.9e-57 224.6 159 79.9
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-56 222.6 179 73.7
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.4e-51 204.5 180 70.6
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 3.2e-42 175.6 156 66.0
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 1.6e-41 173.3 157 66.9
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 6.0e-41 171.4 156 66.0
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 3.4e-36 155.6 195 54.4
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 2.8e-30 136.0 135 58.5
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.6e-30 135.6 85 87.1
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-29 132.9 85 85.9
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 3.1e-29 132.5 152 55.9
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 3.1e-29 132.5 152 55.9
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 5.2e-29 131.7 133 59.4
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.0e-28 129.8 76 88.2
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 4.4e-28 128.6 130 59.2
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 9.9e-28 127.5 152 53.9
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 9.9e-28 127.5 149 53.0
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 1.3e-27 127.1 143 56.6
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 1.3e-27 127.1 133 56.4
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.9e-27 125.9 92 78.3
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 2.9e-27 125.9 139 55.4
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 8.4e-27 124.4 129 57.4
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 8.4e-27 124.4 132 57.6
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 8.4e-27 124.4 153 51.6
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 1.1e-26 124.0 133 55.6
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.1e-26 124.0 130 55.4
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.1e-26 124.0 153 51.0
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 1.9e-26 123.2 134 53.7
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 2.4e-26 122.9 148 54.7
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 3.2e-26 122.5 135 54.8
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.6e-25 120.2 138 53.6
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 2.7e-25 119.4 155 49.7
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.7e-25 119.4 148 51.4
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 3.5e-25 119.0 134 51.5
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 6.0e-25 118.2 167 47.3
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 7.8e-25 117.9 156 49.4
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.3e-24 117.1 158 48.7
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 3.0e-24 115.9 154 47.4
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 8.6e-24 114.4 175 45.7
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.9e-23 113.2 144 51.4
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 1.9e-23 113.2 150 49.3
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.9e-23 113.2 156 49.4
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 4.3e-23 112.1 152 47.4
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 5.6e-23 111.7 137 52.6
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.6e-22 110.2 137 52.6
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.1e-22 109.8 137 51.8
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 3.6e-22 109.0 129 49.6
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 4.7e-22 108.6 162 46.9
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 4.7e-22 108.6 154 48.1
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 6.2e-22 108.2 154 48.1
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 8.1e-22 107.8 150 47.3
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 8.1e-22 107.8 144 47.2
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.1e-21 107.5 142 50.7
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.1e-21 107.5 155 48.4
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.1e-21 105.9 159 46.5
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 4.0e-21 105.5 150 48.0
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 4.0e-21 105.5 154 46.8
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 5.2e-21 105.1 116 57.8
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 6.9e-21 104.8 152 46.7
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 8.9e-21 104.4 152 46.1
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.0e-20 103.2 162 45.1
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 2.0e-20 103.2 143 46.2
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.0e-20 103.2 152 47.4
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.6e-20 102.8 161 46.0
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 2.6e-20 102.8 162 44.4
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 7.6e-20 101.3 162 43.2
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 7.6e-20 101.3 154 45.5
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 9.9e-20 100.9 162 42.6
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 9.9e-20 100.9 186 43.0
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 2.2e-19 99.8 146 47.3
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.9e-19 99.4 154 44.8
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 2.9e-19 99.4 154 44.8
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 2.9e-19 99.4 117 51.3
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 3.8e-19 99.0 147 45.6
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 4.9e-19 98.6 117 51.3
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 6.4e-19 98.2 120 52.5
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 2.4e-18 96.3 146 42.5
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 3.2e-18 95.9 149 45.6
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 3.2e-18 95.9 155 40.6
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 4.2e-18 95.5 150 45.3
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 4.2e-18 95.5 146 44.5
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.6e-17 93.6 156 45.5
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 2.7e-17 92.8 102 52.9
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 3.5e-17 92.4 159 43.4
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 3.5e-17 92.4 141 44.7
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 4.6e-17 92.0 140 45.0
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 7.8e-17 91.3 154 42.9
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.3e-16 90.5 118 48.3
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.7e-16 90.1 140 47.1
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 2.3e-16 89.7 117 49.6
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 2.3e-16 89.7 117 49.6
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 2.3e-16 89.7 117 49.6
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 3.9e-16 89.0 141 45.4
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 5.1e-16 88.6 153 40.5
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 6.6e-16 88.2 146 43.2
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 6.6e-16 88.2 116 47.4
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 8.7e-16 87.8 141 44.7
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 1.1e-15 87.4 151 37.7
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.5e-15 87.0 148 44.6
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.5e-15 87.0 131 44.3
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 1.5e-15 87.0 131 44.3
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.5e-15 86.3 160 43.1
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 2.5e-15 86.3 113 46.9
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 4.8e-14 82.0 112 49.1
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 4.8e-14 82.0 128 45.3
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 8.1e-14 81.3 154 42.9
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.4e-13 80.5 109 45.9
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.4e-13 80.5 109 45.9
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 2.4e-13 79.7 152 39.5
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 1.2e-12 77.4 64 59.4
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.5e-12 77.0 83 54.2
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 4.5e-12 75.5 143 39.9
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 3.8e-11 72.4 124 39.5
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 4.9e-11 72.0 171 36.8
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 4.9e-11 72.0 173 34.1
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 6.4e-11 71.6 105 50.5
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.1e-10 70.9 139 41.0
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 1.4e-10 70.5 128 39.1
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.2e-10 68.9 151 37.1
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 4.2e-10 68.9 106 42.5
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 6.0e-09 65.1 115 39.1
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 6.7e-08 61.6 129 36.4
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 6.7e-08 61.6 129 36.4
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 6.7e-08 61.6 133 39.8
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 4.3e-07 58.9 116 36.2


User provided reference genes

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