Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.0e-125 453.4 226 100.0
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.6e-100 369.0 193 96.4
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 4.4e-100 368.2 193 94.8
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.3e-99 366.7 193 94.3
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.3e-99 366.7 193 94.3
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 8.3e-99 364.0 193 94.8
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 5.1e-96 354.8 193 90.2
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 5.3e-69 265.0 202 65.3
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 2.7e-65 252.7 193 65.3
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 2.2e-59 233.0 193 59.1
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 2.3e-56 223.0 194 57.7
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 8.7e-56 221.1 192 56.8
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 1.5e-55 220.3 192 56.8
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 9.6e-55 217.6 194 55.2
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 8.2e-54 214.5 193 53.9
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 8.2e-54 214.5 191 56.0
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 1.1e-53 214.2 195 57.9
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 1.4e-53 213.8 172 58.1
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 4.1e-53 212.2 192 55.7
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 5.3e-53 211.8 190 54.7
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 6.9e-53 211.5 195 55.9
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 1.2e-52 210.7 193 56.5
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 1.2e-52 210.7 190 54.7
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 2.0e-52 209.9 190 54.7
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 4.5e-52 208.8 190 54.2
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 1.3e-51 207.2 188 58.0
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 1.7e-51 206.8 193 56.5
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 2.2e-51 206.5 172 57.6
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 2.2e-51 206.5 191 54.5
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 6.5e-51 204.9 183 55.2
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 8.4e-51 204.5 190 53.2
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 2.5e-50 203.0 191 53.4
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 2.5e-50 203.0 195 52.8
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 9.3e-50 201.1 157 61.1
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 1.2e-49 200.7 172 55.8
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 2.1e-49 199.9 173 57.2
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 2.1e-49 199.9 174 55.2
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 2.7e-49 199.5 168 59.5
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 3.5e-49 199.1 167 55.1
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 4.6e-49 198.7 191 53.4
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 6.1e-49 198.4 179 53.6
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 7.9e-49 198.0 191 54.5
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 1.0e-48 197.6 196 55.1
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 1.0e-48 197.6 188 52.1
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 1.3e-48 197.2 173 57.8
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 1.3e-48 197.2 163 57.7
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 2.3e-48 196.4 173 56.6
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 2.3e-48 196.4 200 51.0
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 3.9e-48 195.7 173 55.5
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 8.7e-48 194.5 173 52.0
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.1e-47 194.1 188 51.6
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 1.9e-47 193.4 188 51.1
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 3.3e-47 192.6 188 51.6
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 3.3e-47 192.6 203 47.3
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 4.3e-47 192.2 213 48.4
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 5.7e-47 191.8 176 54.5
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 5.7e-47 191.8 172 53.5
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 7.4e-47 191.4 159 57.2
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.6e-46 190.3 192 50.5
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 2.8e-46 189.5 160 58.1
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 2.8e-46 189.5 188 51.1
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 1.2e-44 184.1 193 51.8
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 5.9e-44 181.8 174 47.1
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 1.7e-43 180.3 151 57.0
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 1.7e-43 180.3 195 45.6
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 2.2e-43 179.9 163 57.1
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 2.2e-43 179.9 137 59.9
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 2.2e-43 179.9 193 49.2
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 5.0e-43 178.7 137 60.6
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 2.5e-42 176.4 197 48.7
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 2.5e-42 176.4 168 52.4
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 5.5e-42 175.3 197 49.2
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 7.2e-42 174.9 157 53.5
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 2.1e-41 173.3 197 48.2
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 4.6e-41 172.2 203 46.3
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 6.1e-41 171.8 198 46.5
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 6.1e-41 171.8 141 55.3
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 1.0e-40 171.0 141 55.3
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 2.3e-40 169.9 192 49.0
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 3.9e-40 169.1 155 49.7
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 6.7e-40 168.3 195 46.2
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 8.8e-40 167.9 194 45.9
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 1.1e-39 167.5 195 46.2
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 1.1e-39 167.5 157 49.7
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 2.5e-39 166.4 198 45.5
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 7.4e-39 164.9 160 50.6
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 7.4e-39 164.9 160 50.6
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 1.3e-38 164.1 195 46.2
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 3.7e-38 162.5 139 53.2
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 5.9e-36 155.2 139 51.8
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.2e-34 148.3 188 38.8
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 1.2e-33 147.5 127 57.5
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 3.3e-31 139.4 126 57.1
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 3.3e-31 139.4 132 47.7
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 4.4e-31 139.0 132 51.5
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 8.2e-30 134.8 132 50.8
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 1.8e-29 133.7 103 62.1
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 3.1e-29 132.9 190 40.0
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 5.9e-28 128.6 98 58.2
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 7.7e-28 128.3 182 40.7
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.3e-27 127.5 126 49.2
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 1.1e-26 124.4 102 55.9
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 2.1e-25 120.2 103 54.4
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 1.4e-24 117.5 105 49.5
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 4.0e-24 115.9 127 44.1
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 1.1e-23 114.4 152 41.4
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 2.6e-23 113.2 105 51.4
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 5.7e-23 112.1 85 58.8
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 5.3e-21 105.5 84 63.1
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 3.5e-20 102.8 128 39.8
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 1.0e-19 101.3 82 56.1
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 2.9e-19 99.8 118 44.9
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 3.8e-19 99.4 117 43.6
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 3.8e-19 99.4 117 43.6
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.9e-18 97.1 105 46.7
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 7.2e-18 95.1 107 41.1
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 1.6e-17 94.0 108 45.4
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 6.1e-17 92.0 87 49.4
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 1.8e-16 90.5 142 37.3
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 9.1e-13 78.2 66 63.6
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 2.2e-11 73.6 68 51.5
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 3.8e-11 72.8 70 41.4
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 3.8e-11 72.8 70 41.4
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 3.8e-11 72.8 65 44.6
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 8.5e-11 71.6 65 43.1
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 2.5e-10 70.1 49 65.3
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 3.6e-09 66.2 65 41.5
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 3.0e-08 63.2 54 61.1
SHI10091 Sapria himalayana HOM05D000172 ORTHO05D008216 2.0e-07 60.5 64 50.0


User provided reference genes

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