Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 2382.4 1243 100.0
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 2237.2 1243 94.9
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 2223.7 1242 93.6
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 2107.4 1253 88.4
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 2095.9 1171 93.9
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1891.7 1171 87.0
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1734.2 1257 73.8
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1529.2 1263 64.3
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1516.1 1264 63.6
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1505.7 1271 63.3
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1465.3 1265 62.0
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1419.4 1260 60.8
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1406.3 1256 60.1
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1384.4 1252 60.1
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1380.2 1261 59.6
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1373.2 1257 59.3
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1367.1 1256 58.8
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1361.3 1255 58.6
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1359.7 1249 58.3
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1357.4 1252 58.5
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1356.3 1249 58.2
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1355.1 1243 58.3
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1352.8 1249 58.9
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1352.0 1271 57.9
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1347.4 1249 57.9
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1343.6 1262 57.1
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1337.4 1256 58.0
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1336.2 1266 57.5
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1333.2 1267 57.4
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1332.0 1260 57.0
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1330.5 1250 57.0
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1330.1 1256 59.0
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1329.7 1274 57.1
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1328.9 1260 55.8
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1313.9 1255 57.4
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1305.8 1256 56.1
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 0.0e+00 1305.8 928 75.0
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1300.4 1251 56.4
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1299.6 1253 57.1
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1295.8 1235 55.7
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1290.0 1266 56.4
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1281.9 1250 55.2
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1279.2 1258 55.5
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1254.2 1247 54.0
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1232.2 1252 54.4
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1228.8 1096 60.0
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1212.6 1263 52.7
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1212.2 1247 52.8
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1211.4 1260 53.3
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1205.7 1260 53.2
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1204.9 1244 52.7
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1204.5 1262 52.8
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1202.2 1261 52.7
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1201.4 1261 52.8
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1195.6 1286 52.3
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1191.4 1110 58.3
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1190.6 1247 52.4
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1190.6 1246 53.1
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1187.2 1253 52.7
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1182.5 1269 52.8
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1181.8 1244 52.0
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1181.8 1247 51.8
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 0.0e+00 1179.1 1008 61.8
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1177.2 1258 51.2
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1175.2 1270 52.1
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1174.8 1261 52.7
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1173.3 1264 53.5
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1172.9 1252 52.4
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1170.6 1242 52.4
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1168.3 1245 51.2
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1161.4 1246 51.4
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1155.6 1256 51.8
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1146.7 1175 55.2
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1146.3 1244 51.9
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1145.2 1238 52.2
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1134.0 1241 52.3
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1133.2 1234 52.4
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1121.3 1261 50.8
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1120.9 1261 50.8
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 1115.9 1235 50.4
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1114.4 1254 50.6
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1112.4 1248 50.4
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1107.4 1259 50.6
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1105.5 1290 49.8
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 0.0e+00 1088.9 955 62.2
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 1080.9 1257 50.0
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 1.2e-308 1063.5 1262 49.0
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 6.9e-296 1021.1 865 62.9
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 6.0e-292 1008.1 1246 46.8
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 7.9e-292 1007.7 1042 51.1
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 2.3e-291 1006.1 1208 47.6
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 7.0e-256 888.3 980 51.2
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 2.5e-245 853.2 853 56.3
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 2.4e-232 810.1 999 48.1
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 2.6e-226 790.0 971 48.2
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 1.1e-224 784.6 1281 38.9
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 1.4e-224 784.3 1243 41.2
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 3.2e-216 756.5 1242 38.6
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 5.1e-206 722.6 904 45.7
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 4.8e-172 609.8 863 42.6
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 2.2e-169 600.9 1120 35.8
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 3.2e-168 597.0 764 43.3
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.5e-165 587.4 860 39.9
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 8.5e-161 572.4 569 54.7
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 4.5e-154 550.1 755 42.6
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.1e-139 502.3 427 64.9
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.3e-137 495.4 649 43.9
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 3.5e-122 444.1 456 52.0
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 4.0e-110 404.1 552 41.8
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 4.7e-103 380.6 365 59.5
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 2.2e-100 371.7 351 62.4
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 2.9e-100 371.3 376 60.1
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 2.4e-99 368.2 344 63.7
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 6.0e-98 363.6 340 63.2
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 2.4e-94 351.7 236 74.2
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 5.2e-94 350.5 662 34.4
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 1.9e-88 332.0 382 46.3
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 9.6e-80 303.1 481 36.2
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 6.7e-73 280.4 395 41.3
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 2.7e-66 258.5 454 34.6
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-60 239.6 340 37.1
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 2.2e-55 222.2 312 41.0
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 9.7e-48 196.8 315 36.8
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 2.6e-40 172.2 169 53.8
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 4.4e-32 144.8 313 36.7
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 1.5e-24 119.8 136 45.6
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 2.8e-23 115.5 116 48.3
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 1.1e-22 113.6 116 49.1
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 3.1e-22 112.1 116 48.3
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 2.9e-20 105.5 203 36.9
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 3.6e-18 98.6 119 43.7
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 1.4e-17 96.7 325 26.5
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 1.9e-11 76.3 61 60.7
SMO364G0092 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 6.8e-09 67.8 298 24.8


User provided reference genes

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