Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 8.6e-78 293.5 140 100.0
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 1.7e-73 279.3 141 95.7
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.7e-73 279.3 141 95.7
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.2e-73 278.9 141 96.5
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.2e-73 278.9 141 96.5
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.9e-73 278.5 141 95.0
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 2.1e-60 235.7 141 84.4
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 1.7e-38 162.9 142 64.1
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 8.1e-36 154.1 144 62.5
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 3.8e-33 145.2 143 58.0
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 5.6e-29 131.3 140 52.9
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 2.4e-27 125.9 141 50.4
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 5.5e-24 114.8 138 47.8
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 9.3e-24 114.0 141 48.9
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 4.6e-23 111.7 139 46.8
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 3.9e-22 108.6 140 45.0
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 8.7e-22 107.5 97 54.6
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.9e-21 106.3 143 45.5
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 2.8e-20 102.4 141 42.6
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 3.7e-20 102.1 139 44.6
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 2.4e-19 99.4 143 46.2
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 3.1e-19 99.0 139 45.3
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 3.1e-19 99.0 138 44.2
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 5.3e-19 98.2 142 41.5
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 1.2e-18 97.1 142 41.5
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.5e-18 96.7 147 41.5
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 2.0e-18 96.3 142 44.4
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 3.4e-18 95.5 141 41.1
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 5.8e-18 94.7 133 42.1
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 5.8e-18 94.7 143 42.0
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 1.0e-17 94.0 149 43.0
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.2e-17 92.8 138 41.3
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 6.5e-17 91.3 124 42.7
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 8.4e-17 90.9 110 45.5
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.1e-16 90.5 113 46.0
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 1.4e-16 90.1 139 42.4
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.4e-16 90.1 122 46.7
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 2.5e-16 89.4 129 38.8
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 2.5e-16 89.4 140 42.9
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 4.2e-16 88.6 131 42.7
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 5.5e-16 88.2 142 38.0
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 5.5e-16 88.2 121 43.8
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 9.3e-16 87.4 141 44.7
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 1.2e-15 87.0 143 39.2
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.1e-15 86.3 124 38.7
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.7e-15 85.9 125 43.2
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 2.7e-15 85.9 124 40.3
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 2.7e-15 85.9 125 43.2
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 4.6e-15 85.1 124 41.9
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 7.9e-15 84.3 137 40.9
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.0e-14 84.0 141 39.7
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.3e-14 83.6 118 40.7
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 1.3e-14 83.6 143 40.6
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.8e-14 83.2 125 42.4
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 2.3e-14 82.8 125 40.0
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 3.9e-14 82.0 125 38.4
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 5.1e-14 81.6 130 39.2
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 6.7e-14 81.3 125 38.4
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 8.7e-14 80.9 121 41.3
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 1.1e-13 80.5 133 42.1
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.1e-13 80.5 125 40.0
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 1.1e-13 80.5 134 38.1
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 2.5e-13 79.3 108 37.0
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 5.7e-13 78.2 88 50.0
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 5.7e-13 78.2 110 42.7
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 5.7e-13 78.2 74 45.9
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 7.4e-13 77.8 105 40.0
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 1.6e-12 76.6 129 40.3
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.1e-12 76.3 114 43.0
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.1e-12 76.3 85 45.9
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 2.8e-12 75.9 113 40.7
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.8e-12 75.9 124 41.1
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 3.7e-12 75.5 70 50.0
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 4.8e-12 75.1 133 40.6
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 6.3e-12 74.7 92 45.7
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 6.3e-12 74.7 112 42.0
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 6.3e-12 74.7 94 40.4
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 8.2e-12 74.3 131 40.5
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.1e-11 73.9 123 38.2
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 1.4e-11 73.6 77 49.4
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 1.4e-11 73.6 93 43.0
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 1.4e-11 73.6 103 38.8
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 1.8e-11 73.2 84 45.2
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 2.4e-11 72.8 97 44.3
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 2.4e-11 72.8 76 46.1
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 4.1e-11 72.0 107 42.1
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 5.3e-11 71.6 150 38.0
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 5.3e-11 71.6 83 44.6
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 5.3e-11 71.6 53 64.2
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 6.9e-11 71.2 150 38.0
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 6.9e-11 71.2 88 44.3
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 9.0e-11 70.9 59 57.6
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.2e-10 70.5 82 45.1
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.2e-10 70.5 83 41.0
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 2.0e-10 69.7 69 47.8
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 2.0e-10 69.7 123 38.2
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 2.6e-10 69.3 125 35.2
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 3.4e-10 68.9 104 41.3
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 3.4e-10 68.9 82 45.1
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 4.5e-10 68.6 93 43.0
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 4.5e-10 68.6 125 34.4
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 1.0e-09 67.4 125 41.6
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 1.0e-09 67.4 84 44.0
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 1.0e-09 67.4 125 41.6
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 1.0e-09 67.4 84 44.0
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 1.0e-09 67.4 125 41.6
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 1.0e-09 67.4 71 45.1
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 1.0e-09 67.4 141 36.9
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 1.3e-09 67.0 101 39.6
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 1.7e-09 66.6 84 44.0
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 1.7e-09 66.6 121 35.5
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 1.7e-09 66.6 121 35.5
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.7e-09 66.6 93 43.0
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 1.7e-09 66.6 110 37.3
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 2.9e-09 65.9 134 33.6
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 2.9e-09 65.9 108 40.7
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 3.8e-09 65.5 116 39.7
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 5.0e-09 65.1 55 52.7
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 5.0e-09 65.1 109 39.4
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 1.1e-08 63.9 108 39.8
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.1e-08 63.9 141 34.0
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.1e-08 63.9 141 34.0
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 1.9e-08 63.2 94 38.3
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 3.2e-08 62.4 127 34.6
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 4.2e-08 62.0 121 35.5
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 1.6e-07 60.1 68 48.5
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 1.6e-07 60.1 98 37.8
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 2.1e-07 59.7 125 35.2
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 3.6e-07 58.9 47 51.1
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 6.1e-07 58.2 35 65.7
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 6.1e-07 58.2 117 32.5
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 6.1e-07 58.2 84 42.9
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 1.0e-06 57.4 75 41.3
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 3.0e-06 55.8 109 33.9
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 3.9e-06 55.5 35 57.1
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 8.7e-06 54.3 61 41.0


User provided reference genes

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