Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 5.2e-76 288.1 204 100.0
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 2.6e-75 285.8 202 100.0
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 3.4e-75 285.4 204 99.5
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 2.2e-74 282.7 204 99.0
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.9e-74 281.6 202 99.0
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-73 280.4 202 99.0
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 1.7e-71 273.1 204 96.1
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 2.6e-59 232.6 206 85.4
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 1.2e-56 223.8 206 85.4
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 1.4e-52 210.3 205 80.5
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 1.9e-49 199.9 207 76.8
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 4.2e-49 198.7 200 79.5
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 4.2e-49 198.7 209 77.0
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 7.1e-49 198.0 204 71.1
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 1.2e-48 197.2 210 70.0
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 2.1e-48 196.4 210 70.0
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 2.7e-48 196.1 202 78.2
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 6.0e-48 194.9 204 77.5
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 7.9e-48 194.5 205 71.2
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 1.0e-47 194.1 206 76.2
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 8.7e-47 191.0 200 74.0
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 1.5e-46 190.3 202 76.2
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 1.5e-46 190.3 202 74.3
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 3.3e-46 189.1 204 76.0
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 9.6e-46 187.6 228 68.9
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 2.1e-45 186.4 206 74.8
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 2.8e-45 186.0 206 74.8
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 6.3e-45 184.9 206 72.8
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 8.2e-45 184.5 207 73.4
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.1e-44 184.1 207 74.9
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 1.8e-44 183.3 199 77.9
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 2.4e-44 183.0 206 73.3
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 3.1e-44 182.6 206 73.8
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 3.1e-44 182.6 196 77.6
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 4.1e-44 182.2 202 75.2
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 4.1e-44 182.2 204 73.5
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 9.0e-44 181.0 206 73.3
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 9.0e-44 181.0 199 77.9
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 5.9e-43 178.3 201 73.6
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 5.9e-43 178.3 204 72.1
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 5.9e-43 178.3 204 71.6
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.0e-42 177.6 199 76.9
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 1.3e-42 177.2 204 76.0
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 1.3e-42 177.2 201 73.6
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 3.8e-42 175.6 205 65.4
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 3.8e-42 175.6 203 72.4
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 3.8e-42 175.6 203 72.4
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 5.5e-41 171.8 207 72.5
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 9.3e-41 171.0 204 71.6
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.2e-40 170.6 203 61.6
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 6.1e-40 168.3 204 70.6
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 6.1e-40 168.3 199 73.4
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 1.8e-39 166.8 170 81.8
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 1.8e-39 166.8 199 67.3
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 3.0e-39 166.0 225 67.6
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 3.0e-39 166.0 210 65.7
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 3.0e-39 166.0 210 65.7
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 3.0e-39 166.0 217 67.3
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 3.9e-39 165.6 203 72.4
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 6.7e-39 164.9 202 71.3
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 1.9e-38 163.3 201 73.1
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 4.3e-38 162.2 181 77.3
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.3e-37 160.6 206 72.8
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.3e-37 160.6 206 72.8
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 2.8e-37 159.5 198 72.2
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 2.8e-37 159.5 182 77.5
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 4.8e-37 158.7 198 58.6
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 1.4e-36 157.1 209 68.9
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.4e-36 157.1 206 68.0
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 5.3e-36 155.2 200 63.5
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 5.3e-36 155.2 193 69.4
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 5.3e-36 155.2 201 70.6
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.2e-35 154.1 191 71.7
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 1.5e-35 153.7 200 71.0
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 1.5e-35 153.7 201 69.7
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 1.5e-35 153.7 205 70.7
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 1.5e-35 153.7 202 71.3
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 2.6e-35 152.9 199 68.3
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 7.7e-35 151.4 189 70.9
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 7.7e-35 151.4 205 70.2
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.3e-34 150.6 199 63.3
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.7e-34 150.2 189 68.3
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.9e-34 149.4 191 68.6
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 5.0e-34 148.7 199 64.3
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 5.0e-34 148.7 191 67.5
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 5.0e-34 148.7 184 54.9
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 5.0e-34 148.7 189 71.4
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 8.5e-34 147.9 204 68.6
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 1.1e-33 147.5 204 67.2
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 1.9e-33 146.7 202 62.9
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 2.5e-33 146.4 208 60.6
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 9.4e-33 144.4 208 66.3
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 1.2e-32 144.1 201 68.7
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 6.1e-32 141.7 162 77.8
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 7.9e-32 141.4 259 45.6
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 1.8e-31 140.2 199 45.2
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 2.3e-31 139.8 198 65.2
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 5.1e-31 138.7 138 71.7
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 5.1e-31 138.7 201 52.2
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 8.8e-31 137.9 208 54.8
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 8.8e-31 137.9 199 44.7
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 1.1e-30 137.5 200 61.5
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 3.3e-30 136.0 198 62.6
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 4.3e-30 135.6 187 44.4
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 5.7e-30 135.2 199 43.7
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 5.7e-30 135.2 199 43.7
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 7.4e-30 134.8 196 65.3
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 1.7e-29 133.7 180 53.3
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 1.7e-29 133.7 199 60.3
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 1.8e-28 130.2 182 69.8
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 3.8e-26 122.5 207 50.2
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 5.0e-26 122.1 148 81.1
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.9e-25 120.2 188 52.7
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 7.2e-25 118.2 196 64.3
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.1e-24 116.7 204 50.5
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 5.2e-23 112.1 194 50.0
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 3.7e-21 105.9 206 47.1
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 4.8e-21 105.5 162 60.5
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 4.8e-21 105.5 162 60.5
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 4.8e-21 105.5 162 60.5
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 4.8e-21 105.5 162 60.5
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 1.1e-20 104.4 163 62.6
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 1.1e-20 104.4 163 62.6
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.8e-20 103.6 148 71.6
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 5.3e-20 102.1 147 72.8
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 1.7e-18 97.1 198 35.4
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 2.9e-18 96.3 140 70.0
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 8.5e-18 94.7 139 50.4
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 1.5e-17 94.0 174 58.0
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 2.7e-16 89.7 138 50.7
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 8.0e-16 88.2 147 53.7
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 1.0e-15 87.8 80 58.8
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 1.8e-15 87.0 139 67.6
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 4.0e-15 85.9 173 35.8
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 8.8e-15 84.7 198 36.4
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 8.8e-15 84.7 198 36.4
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 8.8e-15 84.7 198 36.4
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-14 84.0 198 36.9
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 4.4e-14 82.4 117 65.0
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 1.4e-12 77.4 76 81.6
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 9.1e-12 74.7 197 51.8
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 2.0e-11 73.6 122 60.7
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 7.7e-11 71.6 103 42.7
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 2.2e-10 70.1 79 49.4
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 3.0e-07 59.7 77 42.9
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 4.0e-07 59.3 64 43.8
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 8.8e-07 58.2 57 56.1
CBR_g37530 Chara braunii HOM05D002729 ORTHO05D003163 5.7e-06 55.5 58 44.8


User provided reference genes

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