Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.2e-165 585.1 314 100.0
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.4e-160 569.7 313 98.1
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.1e-160 568.5 313 96.2
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 3.3e-154 548.5 314 92.0
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.3e-150 536.6 331 90.0
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 4.2e-149 531.6 312 89.1
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 7.2e-141 504.2 300 90.0
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.1e-133 480.3 315 78.1
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.9e-133 479.6 319 80.6
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 6.5e-126 454.5 318 75.2
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 5.7e-122 441.4 242 86.8
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 7.5e-122 441.0 288 76.0
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.2e-121 439.5 306 72.5
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 2.8e-121 439.1 301 73.1
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.8e-121 439.1 307 72.0
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 3.7e-121 438.7 242 86.8
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 3.7e-121 438.7 242 86.8
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.8e-120 436.4 241 85.9
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 5.3e-120 434.9 241 85.5
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.2e-119 433.7 241 85.5
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.6e-119 432.6 301 74.8
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 2.6e-119 432.6 240 85.8
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 4.5e-119 431.8 241 86.3
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 5.9e-119 431.4 302 71.2
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 7.7e-119 431.0 277 80.1
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.0e-118 430.6 243 83.5
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.0e-118 430.6 241 85.9
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 1.3e-118 430.3 298 72.8
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.9e-118 429.1 293 72.0
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.9e-118 429.1 241 85.9
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 3.8e-118 428.7 291 73.2
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 6.5e-118 427.9 241 84.6
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 8.5e-118 427.6 241 83.8
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.5e-117 426.8 241 84.2
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.5e-117 426.8 241 82.2
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.9e-117 426.4 320 67.8
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.9e-117 426.4 241 82.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.9e-117 426.4 292 73.3
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 3.2e-117 425.6 242 82.6
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.2e-117 425.6 241 83.4
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.2e-117 425.6 241 83.4
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 3.2e-117 425.6 244 82.8
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 3.2e-117 425.6 241 83.0
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 4.2e-117 425.2 241 82.6
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 4.2e-117 425.2 241 83.4
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 4.2e-117 425.2 241 83.8
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.5e-117 424.9 302 71.2
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 5.5e-117 424.9 243 81.5
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.4e-117 424.1 241 83.0
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 9.4e-117 424.1 241 84.2
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.2e-116 423.7 244 81.6
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 1.2e-116 423.7 306 70.6
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-116 423.3 243 81.5
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 4.7e-116 421.8 243 81.1
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 4.7e-116 421.8 241 84.2
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 4.7e-116 421.8 242 83.5
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 6.1e-116 421.4 277 75.1
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 8.0e-116 421.0 242 81.8
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.0e-115 420.6 241 81.3
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.0e-115 420.6 245 81.6
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.0e-115 420.6 245 81.2
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.4e-115 420.2 302 69.9
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 4.0e-115 418.7 245 80.8
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 4.0e-115 418.7 307 68.7
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 5.2e-115 418.3 241 82.6
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 5.2e-115 418.3 315 67.6
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 8.8e-115 417.5 323 67.2
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.2e-114 417.2 241 82.6
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 2.0e-114 416.4 297 70.0
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 4.4e-114 415.2 241 82.2
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 5.7e-114 414.8 313 68.7
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 7.5e-114 414.5 241 79.3
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 7.5e-114 414.5 246 79.7
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.3e-113 413.7 332 64.2
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 3.7e-113 412.1 261 75.9
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 6.3e-113 411.4 241 78.4
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.4e-112 410.2 246 78.5
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 9.1e-112 407.5 241 80.5
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 2.0e-111 406.4 241 80.1
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.0e-111 406.4 246 78.0
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.0e-111 406.4 241 79.3
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.9e-110 402.5 241 80.1
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 3.8e-110 402.1 214 91.6
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 3.6e-108 395.6 292 68.8
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 8.0e-108 394.4 241 76.3
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 8.0e-108 394.4 241 76.3
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 3.0e-107 392.5 241 75.9
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 5.2e-107 391.7 241 75.5
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.2e-106 390.6 241 75.9
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.6e-106 389.4 241 75.9
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.3e-105 387.1 246 75.2
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 2.2e-105 386.3 241 75.5
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.8e-104 383.3 329 62.0
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 9.1e-104 380.9 257 73.9
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 3.8e-102 375.6 400 53.5
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 8.9e-99 364.4 369 55.3
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 8.9e-99 364.4 213 81.7
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.0e-98 363.2 241 73.4
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 9.8e-98 360.9 241 72.2
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 5.4e-96 355.1 212 77.4
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.7e-95 352.8 272 64.0
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 4.6e-95 352.1 249 70.3
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 7.8e-95 351.3 245 70.6
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 3.1e-91 339.3 241 71.0
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 8.9e-91 337.8 241 70.5
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 8.9e-91 337.8 212 79.2
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 3.2e-88 329.3 237 64.1
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 7.0e-88 328.2 249 64.7
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 4.6e-87 325.5 238 63.0
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 6.6e-86 321.6 185 82.7
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.2e-80 302.8 231 67.1
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.2e-76 290.8 212 63.2
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.8e-76 289.7 168 82.7
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 9.2e-72 274.6 241 52.7
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.1e-67 261.2 224 62.1
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.4e-67 260.8 159 78.6
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 3.1e-67 259.6 176 71.6
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 7.6e-66 255.0 164 73.2
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.9e-65 253.1 242 50.0
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 8.4e-65 251.5 251 51.4
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 2.7e-63 246.5 141 85.1
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 7.3e-61 238.4 192 64.1
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 4.8e-60 235.7 298 48.7
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.4e-59 234.2 206 61.2
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.7e-57 227.3 241 43.2
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.3e-56 221.5 137 78.8
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.7e-54 217.2 137 75.2
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 7.4e-53 211.8 238 45.8
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.4e-51 207.6 131 73.3
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.7e-49 200.7 126 78.6
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 3.8e-49 199.5 115 80.0
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.2e-48 196.4 163 60.1
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.2e-47 194.5 136 70.6
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.2e-47 194.5 136 70.6
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.7e-47 193.4 110 80.0
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 8.7e-46 188.3 111 76.6
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 2.5e-45 186.8 110 81.8
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 9.6e-45 184.9 99 83.8
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.4e-43 180.3 101 80.2
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 4.0e-43 179.5 164 58.5
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 4.5e-42 176.0 239 38.9
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.6e-39 166.0 96 80.2
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 3.9e-38 162.9 236 39.4
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 3.7e-36 156.4 99 69.7
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 2.0e-34 150.6 235 36.6
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 3.8e-33 146.4 77 85.7
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 6.5e-33 145.6 82 76.8
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 3.6e-31 139.8 73 82.2
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 2.3e-30 137.1 76 80.3
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.3e-28 131.3 73 79.5
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 3.1e-27 126.7 67 83.6
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 1.4e-22 111.3 93 61.3
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.0e-22 110.2 59 86.4
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.1e-22 109.4 56 80.4
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 9.7e-21 105.1 241 30.3
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 6.3e-20 102.4 55 78.2
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 2.4e-19 100.5 70 71.4
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 5.0e-17 92.8 46 84.8
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.1e-16 91.7 47 87.2
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 7.2e-16 89.0 47 80.9
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.5e-13 81.3 62 53.2
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.7e-12 77.8 114 37.7
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 1.2e-10 71.6 45 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 6.5e-09 65.9 108 36.1
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 3.0e-06 57.0 73 45.2


User provided reference genes

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