Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.2e-166 589.7 299 100.0
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 7.0e-162 573.9 314 93.9
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 2.5e-159 565.5 300 96.3
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.8e-158 562.0 299 95.0
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.7e-158 561.2 314 92.4
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.1e-158 560.8 299 95.3
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.9e-155 552.0 319 90.0
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 5.0e-144 514.6 302 87.1
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 4.4e-124 448.4 302 74.8
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.0e-112 410.6 299 69.2
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 7.4e-111 404.4 304 68.8
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 1.3e-110 403.7 302 68.5
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 1.6e-110 403.3 332 63.6
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 4.5e-108 395.2 300 69.0
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 4.9e-107 391.7 304 65.5
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 1.1e-106 390.6 299 66.9
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 3.0e-104 382.5 305 65.6
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 6.7e-104 381.3 302 61.6
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 9.6e-103 377.5 301 63.8
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 9.6e-103 377.5 300 64.7
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 1.8e-101 373.2 298 64.1
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 6.9e-101 371.3 303 64.7
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 1.5e-100 370.2 303 63.7
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.3e-99 367.1 303 64.0
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 1.3e-99 367.1 287 65.5
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 6.5e-99 364.8 301 61.5
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 1.4e-98 363.6 301 63.5
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 1.4e-98 363.6 301 61.1
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 1.3e-96 357.1 301 61.5
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 1.3e-96 357.1 300 61.3
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 3.9e-96 355.5 303 60.4
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 8.7e-96 354.4 365 52.3
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 1.9e-95 353.2 299 60.2
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 4.3e-95 352.1 299 60.2
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 5.7e-95 351.7 304 61.8
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 3.7e-94 349.0 301 58.5
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 1.4e-93 347.1 300 60.0
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 5.3e-93 345.1 305 59.3
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-93 345.1 228 73.2
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 5.3e-93 345.1 297 60.9
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 5.3e-93 345.1 299 58.5
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 3.8e-91 339.0 328 56.1
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 5.0e-91 338.6 277 61.4
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 5.0e-91 338.6 277 62.1
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 5.0e-91 338.6 298 59.1
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 6.5e-91 338.2 238 68.9
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 1.1e-90 337.4 289 59.5
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 2.5e-90 336.3 277 61.0
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 2.5e-90 336.3 279 62.4
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 2.5e-90 336.3 308 58.8
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 2.5e-90 336.3 235 71.1
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 3.2e-90 335.9 279 61.6
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 4.2e-90 335.5 288 60.1
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 7.2e-90 334.7 296 56.8
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 1.6e-89 333.6 273 62.3
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 2.7e-89 332.8 287 59.9
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 2.7e-89 332.8 306 57.2
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 4.6e-89 332.0 274 63.5
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 4.6e-89 332.0 331 54.1
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.0e-88 330.9 277 60.3
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 1.0e-88 330.9 252 66.3
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 1.4e-88 330.5 292 57.9
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 1.8e-88 330.1 289 57.4
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 2.3e-88 329.7 276 60.5
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 3.0e-88 329.3 301 57.1
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 3.9e-88 328.9 277 59.9
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 8.8e-88 327.8 219 72.6
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 1.5e-87 327.0 219 71.7
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 4.3e-87 325.5 299 54.2
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 5.7e-87 325.1 272 61.8
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 1.1e-85 320.9 243 65.0
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.0e-83 314.3 307 55.4
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.3e-83 313.9 276 60.5
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 1.3e-83 313.9 215 71.6
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 1.4e-82 310.5 252 63.5
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 4.7e-81 305.4 205 69.3
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 3.0e-80 302.8 300 54.7
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 3.0e-80 302.8 232 62.1
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 4.4e-79 298.9 197 72.1
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 1.1e-77 294.3 278 59.4
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 2.0e-76 290.0 274 55.5
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 1.0e-75 287.7 205 69.8
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 3.8e-75 285.8 216 63.0
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 3.6e-73 279.3 316 51.3
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 1.8e-72 276.9 174 76.4
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 3.9e-72 275.8 300 51.3
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 5.9e-68 261.9 178 70.8
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.2e-65 254.2 268 51.5
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 1.4e-64 250.8 230 56.1
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 1.3e-62 244.2 236 56.4
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 1.7e-59 233.8 466 35.4
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 3.8e-59 232.6 177 63.8
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 4.2e-58 229.2 174 66.1
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 5.0e-51 205.7 271 46.5
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 6.6e-51 205.3 226 49.1
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 4.2e-50 202.6 248 46.0
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 2.1e-49 200.3 217 47.9
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.8e-48 197.2 187 57.8
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.8e-48 197.2 288 44.1
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 4.0e-48 196.1 274 38.3
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 4.9e-46 189.1 157 60.5
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 1.1e-45 188.0 263 43.7
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 2.4e-45 186.8 239 44.4
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.5e-39 167.5 154 57.8
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 2.6e-39 166.8 140 60.7
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 3.3e-34 149.8 274 39.4
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 6.2e-33 145.6 154 48.7
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 2.1e-25 120.6 72 75.0
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 6.8e-24 115.5 201 32.8
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 1.7e-22 110.9 68 69.1
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 3.5e-20 103.2 58 82.8
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 1.5e-15 87.8 113 50.4
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 7.1e-13 79.0 118 39.0
GSVIVG01000001001 Vitis vinifera HOM05D004613 ORTHO05D006095 4.6e-12 76.3 113 42.5
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 8.7e-11 72.0 52 59.6
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 3.6e-09 66.6 46 67.4
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 3.1e-08 63.5 46 65.2
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 4.0e-08 63.2 114 36.0
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 2.0e-07 60.8 80 43.8
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 2.6e-07 60.5 89 40.4
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 2.6e-07 60.5 89 40.4
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 7.6e-07 58.9 89 39.3
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 2.9e-06 57.0 55 50.9
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 2.9e-06 57.0 114 34.2
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 3.8e-06 56.6 57 49.1
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 3.8e-06 56.6 46 56.5


User provided reference genes

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