Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.1e-171 606.7 343 100.0
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.5e-168 596.3 342 97.4
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 5.8e-168 594.3 344 97.1
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 7.5e-168 594.0 342 96.8
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.9e-167 592.0 343 88.6
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 4.1e-158 561.6 348 91.4
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 6.8e-145 517.7 343 74.6
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 1.5e-144 516.5 343 75.2
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 1.7e-140 503.1 346 74.9
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 3.9e-140 501.9 343 72.9
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 5.6e-139 498.0 347 74.4
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 7.3e-139 497.7 346 72.8
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 2.1e-138 496.1 346 78.6
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 3.1e-137 492.3 344 71.8
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 2.0e-136 489.6 346 69.1
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 5.8e-136 488.0 346 71.4
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 2.9e-135 485.7 344 67.7
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 3.8e-135 485.3 347 74.4
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.4e-135 484.2 346 71.1
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.1e-134 483.8 344 73.0
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-134 483.4 346 70.8
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 7.1e-134 481.1 343 78.1
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.6e-133 479.9 348 71.3
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 3.5e-133 478.8 343 70.6
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 6.0e-133 478.0 343 78.4
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.8e-133 477.6 343 76.7
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 1.3e-132 476.9 347 66.6
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-132 476.5 343 76.7
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 3.0e-132 475.7 346 67.3
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 5.1e-132 474.9 346 74.3
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 5.1e-132 474.9 343 76.7
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 6.6e-132 474.6 348 67.8
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.3e-130 470.3 347 69.7
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.1e-130 469.5 340 67.1
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 3.6e-130 468.8 346 72.0
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 4.8e-130 468.4 337 70.3
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 6.2e-130 468.0 348 69.8
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.1e-130 467.6 340 65.6
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 8.1e-130 467.6 345 78.6
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 2.4e-129 466.1 347 64.8
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 2.4e-129 466.1 343 73.5
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.1e-129 465.7 343 66.5
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 3.1e-129 465.7 346 67.1
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 3.1e-129 465.7 346 69.4
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 4.0e-129 465.3 347 67.4
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 5.3e-129 464.9 350 68.0
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.2e-128 463.8 349 67.0
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.6e-128 462.6 356 64.3
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 4.5e-128 461.8 348 76.7
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 4.5e-128 461.8 344 66.9
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 4.5e-128 461.8 345 65.2
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 4.5e-128 461.8 345 74.2
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 9.9e-128 460.7 346 69.9
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.7e-127 459.9 338 69.5
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 2.2e-127 459.5 343 64.7
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 3.8e-127 458.8 344 69.5
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 4.9e-127 458.4 338 74.0
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 6.4e-127 458.0 338 68.0
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.1e-126 457.2 338 69.2
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 1.4e-126 456.8 345 64.1
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 2.4e-126 456.1 342 67.3
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.2e-126 455.7 344 74.1
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 7.1e-126 454.5 349 69.6
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 7.1e-126 454.5 349 67.6
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.2e-125 453.8 347 67.7
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 1.2e-125 453.8 341 63.3
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 2.1e-125 453.0 347 69.7
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.1e-125 453.0 339 72.6
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 3.5e-125 452.2 348 66.1
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 3.5e-125 452.2 348 70.1
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 3.5e-125 452.2 345 69.0
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 6.0e-125 451.4 348 76.4
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 6.0e-125 451.4 349 69.3
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 7.9e-125 451.1 344 73.8
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.0e-124 450.7 348 71.8
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 3.9e-124 448.7 339 66.7
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 8.7e-124 447.6 343 67.9
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.5e-123 446.8 342 70.5
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.9e-123 446.4 346 70.5
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 5.6e-123 444.9 347 72.3
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 9.6e-123 444.1 340 72.4
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 2.8e-122 442.6 341 70.1
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 8.1e-122 441.0 343 65.3
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 5.8e-120 434.9 364 59.9
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 6.4e-119 431.4 344 67.2
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.9e-118 429.9 347 65.4
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 3.2e-118 429.1 327 64.5
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.8e-116 423.3 346 65.0
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.3e-116 422.9 345 65.8
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 5.1e-116 421.8 349 65.0
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 6.7e-116 421.4 341 71.0
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 6.7e-116 421.4 445 52.1
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.5e-115 419.5 346 65.0
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 4.8e-114 415.2 349 66.2
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.8e-113 413.3 346 65.3
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.8e-113 413.3 344 60.5
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 4.5e-112 408.7 352 66.2
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 5.8e-112 408.3 346 61.8
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.0e-111 407.5 346 63.6
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.7e-111 406.8 343 59.2
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 2.2e-111 406.4 339 60.2
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.9e-111 406.0 346 64.2
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.9e-111 406.0 348 62.4
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 3.8e-111 405.6 359 63.0
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 3.8e-111 405.6 301 74.8
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 2.5e-110 402.9 343 59.5
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 4.2e-110 402.1 345 59.7
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 5.5e-110 401.7 343 59.2
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 7.1e-110 401.4 343 58.6
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.6e-109 400.2 338 58.0
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.5e-109 399.1 340 55.3
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 5.1e-108 395.2 350 55.1
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.1e-107 394.0 337 55.2
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.9e-107 393.3 343 55.7
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.6e-106 390.2 304 63.2
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 2.2e-106 389.8 292 69.5
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.8e-106 389.4 232 79.7
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.7e-106 389.0 338 62.4
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.1e-105 386.0 351 63.0
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 6.9e-105 384.8 348 61.2
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.2e-104 384.0 343 57.7
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.4e-104 382.5 351 59.5
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 7.7e-104 381.3 347 52.2
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 2.9e-103 379.4 348 51.7
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 5.0e-103 378.6 335 63.9
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 6.5e-103 378.3 343 53.4
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.5e-102 375.2 339 57.5
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.6e-101 373.6 346 58.7
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 3.6e-101 372.5 427 56.4
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.3e-100 369.8 337 52.8
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.1e-99 367.5 291 67.4
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 1.5e-99 367.1 341 61.9
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.6e-96 356.3 295 61.7
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 5.7e-91 338.6 299 58.5
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 7.4e-91 338.2 300 71.3
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 5.3e-89 332.0 358 53.6
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.2e-85 320.9 288 56.6
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 1.6e-85 320.5 243 70.8
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 9.7e-83 311.2 336 44.0
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 2.2e-82 310.1 333 45.0
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 8.2e-82 308.1 276 67.0
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 7.0e-81 305.1 338 49.4
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 3.8e-79 299.3 244 69.3
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 2.5e-78 296.6 286 54.5
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.4e-78 294.7 216 69.4
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.4e-76 290.8 281 54.4
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.3e-76 290.0 243 58.4
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 3.0e-76 289.7 187 75.4
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.8e-76 288.5 343 47.2
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 6.8e-76 288.5 243 63.8
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.8e-73 280.4 168 82.7
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 1.9e-70 270.4 229 54.6
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.2e-69 267.7 232 54.7
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 2.7e-69 266.5 338 42.3
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 1.7e-66 257.3 241 54.8
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 1.7e-66 257.3 335 44.5
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 6.3e-66 255.4 241 61.8
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.9e-63 246.5 230 50.9
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 8.6e-63 245.0 145 78.6
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 7.2e-62 241.9 226 53.1
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 8.9e-60 235.0 245 50.2
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 7.3e-54 215.3 130 76.2
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.6e-47 191.8 140 65.0
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 1.2e-43 181.4 102 80.4
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.6e-39 165.2 131 65.6
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.3e-38 163.3 128 65.6
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 4.0e-36 156.4 135 60.0
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 2.2e-26 124.0 72 76.4
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.2e-24 118.2 343 26.2
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 8.7e-23 112.1 72 66.7
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.5e-19 101.3 54 75.9
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 2.6e-19 100.5 145 33.1
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.3e-17 92.0 54 75.9
PRCOL_00004263 Prasinoderma coloniale HOM05D068002 ORTHO05D004501 7.9e-16 89.0 234 26.5
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 2.0e-11 74.3 217 24.4
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 9.9e-11 72.0 140 34.3
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 2.1e-08 64.3 103 39.8
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 3.5e-08 63.5 45 68.9
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 1.5e-06 58.2 61 41.0


User provided reference genes

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