Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.1e-221 771.2 409 100.0
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.9e-219 765.0 408 99.0
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 2.9e-211 738.4 409 94.1
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.4e-189 666.4 357 99.4
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 2.5e-186 655.6 391 84.1
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.5e-178 629.0 344 98.3
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 6.0e-172 607.8 389 79.2
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 9.6e-170 600.5 398 77.6
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 2.6e-167 592.4 399 75.2
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 9.9e-167 590.5 398 76.4
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.3e-166 590.1 404 76.2
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 5.4e-165 584.7 396 74.7
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.1e-162 577.0 389 84.1
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 3.3e-162 575.5 401 74.1
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 5.6e-162 574.7 398 73.1
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.3e-161 573.5 399 73.4
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.1e-160 570.5 399 73.7
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 2.4e-160 569.3 395 74.4
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 4.0e-160 568.5 401 74.6
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 6.9e-160 567.8 398 74.1
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.9e-158 562.4 395 72.9
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.9e-157 559.7 395 72.7
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 7.1e-157 557.8 400 72.8
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 2.7e-156 555.8 454 65.9
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 4.6e-156 555.1 395 72.2
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 7.9e-156 554.3 400 70.8
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 5.1e-155 551.6 449 64.8
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.5e-154 550.1 300 99.0
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.5e-154 549.3 373 76.9
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 6.2e-153 544.7 399 70.2
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 1.4e-149 533.5 400 69.0
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.4e-149 533.5 396 68.9
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.9e-149 533.1 396 68.7
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 5.5e-149 531.6 400 68.0
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 4.6e-148 528.5 396 68.2
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 1.8e-147 526.6 399 67.2
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 3.0e-147 525.8 394 70.1
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.9e-146 523.1 300 96.3
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 9.6e-146 520.8 395 69.1
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 9.6e-146 520.8 397 68.3
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 2.8e-145 519.2 395 69.1
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 4.8e-145 518.5 391 70.3
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.1e-144 517.3 395 67.3
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 5.3e-144 515.0 398 68.1
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.5e-143 513.5 392 67.9
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 5.8e-143 511.5 392 67.3
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 2.2e-142 509.6 401 67.1
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 2.9e-142 509.2 396 66.4
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 4.9e-142 508.4 394 67.3
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 4.9e-142 508.4 392 67.1
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 6.5e-142 508.1 389 68.6
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 8.4e-142 507.7 396 65.9
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 1.1e-141 507.3 392 65.3
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 9.3e-141 504.2 421 66.3
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 3.9e-139 498.8 386 68.4
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 5.1e-139 498.4 386 68.4
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.1e-138 497.3 386 68.4
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.5e-138 496.9 386 68.1
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 7.4e-138 494.6 386 67.9
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.6e-137 493.4 407 64.4
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 2.2e-137 493.0 389 66.6
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 2.8e-137 492.7 390 67.4
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 1.1e-136 490.7 398 66.1
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.4e-136 490.3 343 74.1
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 5.3e-136 488.4 396 66.7
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 9.0e-136 487.6 405 64.2
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 1.2e-135 487.3 392 64.3
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 3.4e-135 485.7 342 70.8
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.3e-134 483.8 390 65.9
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 1.7e-134 483.4 397 61.7
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 5.0e-134 481.9 399 63.9
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 6.5e-134 481.5 392 66.3
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 7.2e-133 478.0 389 65.8
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 9.4e-133 477.6 389 65.8
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 2.7e-132 476.1 389 65.6
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 6.1e-132 474.9 405 62.5
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 6.1e-132 474.9 399 64.9
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 1.0e-131 474.2 414 63.0
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.4e-131 473.8 355 68.5
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 6.7e-131 471.5 380 65.3
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 8.8e-131 471.1 367 66.5
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 7.4e-130 468.0 428 58.6
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 2.2e-129 466.5 414 61.1
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 4.8e-129 465.3 390 64.6
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 8.2e-129 464.5 422 60.9
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.8e-128 463.4 401 62.3
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 1.4e-125 453.8 396 62.9
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.2e-125 452.6 329 72.0
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 7.2e-125 451.4 391 61.6
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 1.2e-124 450.7 340 70.3
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.1e-122 444.1 391 62.7
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.4e-122 442.2 361 69.8
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 4.4e-122 442.2 397 58.9
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 9.7e-122 441.0 390 63.6
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 1.4e-120 437.2 333 69.4
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 4.5e-119 432.2 371 60.9
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.9e-117 426.8 327 70.3
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 9.4e-117 424.5 408 58.1
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 3.6e-116 422.5 325 68.0
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 2.3e-115 419.9 403 59.6
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.6e-114 416.4 397 56.4
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 7.7e-111 404.8 398 56.3
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 1.1e-109 401.0 300 69.7
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.0e-107 394.4 282 72.0
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 2.6e-106 389.8 346 60.4
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 1.8e-104 383.6 205 93.7
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 3.6e-100 369.4 319 63.3
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 6.8e-99 365.2 288 66.3
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 2.2e-97 360.1 325 60.0
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 3.3e-93 346.3 446 48.9
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 3.2e-72 276.6 209 68.4
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 5.8e-66 255.8 148 96.6
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 8.9e-59 231.9 417 38.8
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 3.4e-58 229.9 403 38.2
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 6.4e-57 225.7 127 87.4
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 1.9e-56 224.2 321 44.5
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.2e-50 204.9 124 82.3
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 1.3e-44 184.9 399 32.6
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 2.3e-30 137.5 104 71.2
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 7.4e-29 132.5 88 76.1
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 7.6e-26 122.5 93 68.8
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.2e-23 115.2 81 72.8
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.8e-22 111.3 92 65.2
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 9.7e-21 105.5 103 53.4
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 3.7e-20 103.6 152 42.1
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 8.5e-17 92.4 113 38.9
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.3e-09 68.6 87 41.4


User provided reference genes

Program Settings