Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1230.3 632 100.0
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1164.4 607 97.9
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1162.5 607 97.9
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1161.4 607 97.9
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1155.6 607 97.4
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1122.1 607 94.9
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 9.2e-305 1049.7 607 87.3
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 6.8e-292 1006.9 607 83.4
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 3.2e-289 998.0 607 82.0
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 4.2e-273 944.5 607 78.3
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 1.8e-268 929.1 607 78.4
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 3.8e-266 921.4 607 77.3
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 3.2e-265 918.3 609 75.2
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 3.9e-263 911.4 607 75.6
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.5e-262 909.4 607 74.5
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 2.8e-261 905.2 607 74.3
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 8.2e-261 903.7 608 75.2
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 2.4e-260 902.1 608 75.0
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 5.3e-260 901.0 607 74.3
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 6.5e-258 894.0 607 74.1
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 1.1e-257 893.3 607 73.8
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 1.4e-257 892.9 607 72.5
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 2.5e-257 892.1 607 72.7
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 4.2e-257 891.3 607 72.7
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 4.2e-257 891.3 609 73.9
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 7.2e-257 890.6 607 71.7
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 1.2e-256 889.8 607 74.1
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 3.6e-256 888.3 607 72.5
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 4.6e-256 887.9 608 73.0
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 4.6e-256 887.9 610 74.4
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 6.1e-256 887.5 608 73.0
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 1.8e-255 885.9 607 72.8
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 1.8e-255 885.9 608 72.7
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 3.9e-255 884.8 607 73.1
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 8.7e-255 883.6 607 72.5
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 2.5e-254 882.1 607 73.6
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 1.6e-253 879.4 607 73.0
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 1.6e-253 879.4 607 73.6
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 2.2e-253 879.0 608 72.9
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 6.3e-253 877.5 607 72.5
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 1.4e-252 876.3 609 73.2
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 1.8e-252 875.9 607 71.2
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 2.4e-252 875.5 608 72.9
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 4.1e-252 874.8 610 71.5
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 6.9e-252 874.0 607 71.5
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 1.5e-251 872.8 607 73.8
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 2.6e-251 872.1 610 71.1
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 1.3e-250 869.8 608 71.1
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 1.3e-250 869.8 607 71.3
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 3.8e-250 868.2 607 72.0
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 5.0e-250 867.8 607 71.3
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 1.9e-249 865.9 609 71.4
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 3.2e-249 865.1 607 71.8
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 5.5e-249 864.4 611 72.3
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 1.2e-248 863.2 609 71.6
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 1.6e-248 862.8 608 71.5
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 2.1e-248 862.4 607 71.5
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 4.6e-248 861.3 607 71.3
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 2.3e-247 859.0 609 71.9
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 8.8e-247 857.1 607 71.3
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 1.1e-246 856.7 608 71.2
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 4.4e-246 854.7 619 70.6
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 2.2e-245 852.4 608 69.4
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 3.7e-245 851.7 607 70.3
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 1.1e-244 850.1 609 69.3
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 1.8e-244 849.4 607 69.4
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 5.9e-243 844.3 609 70.1
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 7.7e-243 844.0 609 71.4
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 7.7e-243 844.0 609 71.4
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 2.2e-242 842.4 609 69.8
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 2.9e-242 842.0 607 69.4
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 1.1e-241 840.1 607 70.5
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 1.1e-241 840.1 609 69.6
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 1.4e-241 839.7 608 69.6
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 1.4e-241 839.7 607 69.5
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 1.9e-241 839.3 608 69.4
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 1.9e-241 839.3 607 70.3
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 3.2e-241 838.6 608 69.4
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 7.2e-241 837.4 611 71.5
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 3.6e-240 835.1 608 68.9
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 3.6e-240 835.1 607 69.4
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 7.9e-240 833.9 602 70.4
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 6.7e-239 830.9 610 69.3
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 1.1e-238 830.1 609 69.5
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 1.5e-238 829.7 609 69.5
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 1.8e-236 822.8 609 67.8
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 5.0e-234 814.7 612 67.0
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 8.5e-234 813.9 542 74.9
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 1.1e-233 813.5 609 69.0
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 3.2e-233 812.0 607 68.4
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 8.0e-232 807.4 609 67.5
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 8.0e-232 807.4 609 67.5
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 1.4e-231 806.6 607 68.0
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 2.3e-231 805.8 615 66.8
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 8.8e-231 803.9 609 66.3
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 7.5e-230 800.8 610 68.0
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 1.3e-229 800.0 619 66.1
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 4.1e-220 768.5 610 65.2
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 3.5e-219 765.4 605 66.0
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 5.9e-211 738.0 577 66.6
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 2.5e-209 732.6 608 58.9
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 1.0e-207 727.2 618 59.1
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 5.9e-203 711.4 609 58.0
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 9.8e-198 694.1 607 60.1
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 3.6e-192 675.6 607 59.1
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 2.3e-178 629.8 606 56.9
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 4.3e-177 625.5 427 73.1
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 2.6e-174 616.3 622 51.3
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 1.4e-156 557.4 629 47.7
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 4.8e-152 542.3 624 46.5
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 1.8e-151 540.4 459 60.1
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 1.1e-148 531.2 618 47.9
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 1.0e-141 508.1 617 46.8
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 2.5e-140 503.4 617 46.4
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 1.6e-139 500.7 609 45.6
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 3.3e-137 493.0 340 75.6
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 5.7e-113 412.5 701 34.7
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.1e-103 380.2 243 78.6
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.1e-103 380.2 243 78.6
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.0e-98 365.2 360 56.9
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 7.8e-94 349.0 504 39.7
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.3e-90 337.4 264 62.5
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.3e-90 337.4 264 62.5
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 2.2e-72 277.7 673 31.1
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 9.3e-55 219.2 240 47.1
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 2.4e-42 177.9 641 28.4
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 1.1e-23 115.9 109 50.5
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 1.7e-11 75.5 562 22.6
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 3.6e-06 57.8 45 68.9
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 3.6e-06 57.8 45 68.9


User provided reference genes

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