Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3268 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.7e-114 414.8 259 100.0
FvH4_6g06400 Fragaria vesca HOM05D002813 ORTHO05D003203 1.1e-54 217.6 262 67.9
FvH4_6g07350 Fragaria vesca HOM05D002813 ORTHO05D003203 8.5e-47 191.4 312 45.5
FAN14G4978 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.2e-46 188.3 262 47.3
FAN02G0224 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.8e-44 183.7 230 59.1
FAN05G4830 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.8e-42 176.4 303 50.5
FAN14G2467 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-40 170.6 303 49.8
FvH4_6g11570 Fragaria vesca HOM05D002813 ORTHO05D003203 3.5e-40 169.5 303 52.5
FAN02G4625 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.7e-40 168.3 232 57.8
RcHm_v2.0_Chr6g0306251 Rosa chinensis HOM05D002813 ORTHO05D003203 6.5e-39 165.2 265 55.1
FAN20G2843 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-35 154.1 187 64.7
FAN04G1304 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.7e-34 150.6 264 51.5
FAN27G3388 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.5e-32 142.9 234 43.6
FAN09G1205 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.1e-29 132.1 193 43.0
FAN16G2005 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.6e-27 126.7 192 57.8
FvH4_2g35530 Fragaria vesca HOM05D002813 ORTHO05D003203 7.5e-27 125.2 189 60.8
FAN11G3977 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.7e-26 122.9 204 55.4
FvH4_3g21760 Fragaria vesca HOM05D002813 ORTHO05D003203 1.1e-25 121.3 192 57.8
FAN14G1246 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.2e-23 113.6 252 50.0
FAN09G3756 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.5e-23 111.7 167 62.3
RcHm_v2.0_Chr3g0468781 Rosa chinensis HOM05D002813 ORTHO05D003203 3.6e-21 106.3 197 51.3
FAN14G4635 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.0e-21 105.1 72 75.0
FvH4_5g12240 Fragaria vesca HOM05D002813 ORTHO05D003203 4.0e-20 102.8 233 40.8
FAN18G4233 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.8e-20 102.1 233 39.9
FvH4_3g11280 Fragaria vesca HOM05D002813 ORTHO05D003203 1.2e-19 101.3 258 34.5
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.2e-19 101.3 68 75.0
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 1.2e-19 101.3 68 75.0
FvH4_6g15310 Fragaria vesca HOM05D002813 ORTHO05D003203 2.0e-19 100.5 257 45.1
Prupe.1G448200 Prunus persica HOM05D002813 ORTHO05D003203 2.6e-19 100.1 260 31.5
FAN09G1014 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.4e-19 99.4 257 45.1
FAN13G3008 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.8e-19 98.2 233 35.2
MD15G1093400 Malus domestica HOM05D002813 ORTHO05D003203 9.8e-19 98.2 231 38.5
FAN04G3253 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.7e-18 96.3 233 36.9
FAN05G0887 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.7e-18 96.3 257 45.1
FAN04G3192 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.3e-18 95.1 256 31.2
FAN01G2630 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.1e-17 94.7 235 39.1
FvH4_5g12200 Fragaria vesca HOM05D002813 ORTHO05D003203 1.4e-17 94.4 263 31.9
FAN15G0916 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.4e-17 93.6 188 37.2
RcHm_v2.0_Chr7g0185371 Rosa chinensis HOM05D002813 ORTHO05D003203 2.4e-17 93.6 229 37.1
FAN27G1144 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.1e-17 93.2 188 37.8
QL12p041353 Quercus lobata HOM05D002813 ORTHO05D003203 3.1e-17 93.2 187 34.8
RcHm_v2.0_Chr6g0307031 Rosa chinensis HOM05D002813 ORTHO05D003203 3.1e-17 93.2 254 33.5
FvH4_2g35000 Fragaria vesca HOM05D002813 ORTHO05D003203 4.1e-17 92.8 188 38.3
FAN02G3770 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.1e-17 92.8 257 44.4
FAN21G2418 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.1e-17 92.8 184 37.5
FvH4_2g34980 Fragaria vesca HOM05D002813 ORTHO05D003203 9.1e-17 91.7 188 35.1
FAN15G2356 Fragaria x ananassa HOM05D002813 ORTHO05D000003 9.1e-17 91.7 233 39.5
FAN14G0433 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.2e-16 91.3 233 45.9
FAN24G2983 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.6e-16 90.9 249 29.7
FAN20G1057 Fragaria x ananassa HOM05D002813 ORTHO05D000003 2.0e-16 90.5 233 45.1
RcHm_v2.0_Chr2g0157391 Rosa chinensis HOM05D002813 ORTHO05D003203 2.7e-16 90.1 185 34.6
FvH4_2g32630 Fragaria vesca HOM05D002813 ORTHO05D003203 3.5e-16 89.7 249 29.7
FvH4_2g37241 Fragaria vesca HOM05D002813 ORTHO05D003203 3.5e-16 89.7 233 32.6
FAN21G0510 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.9e-16 89.0 233 38.6
FAN18G2831 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.7e-16 88.6 263 44.9
FAN27G2509 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.7e-16 88.6 188 34.0
FAN20G2873 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.0e-15 88.2 188 34.0
FAN27G1742 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.0e-15 88.2 233 38.2
FvH4_7g07300 Fragaria vesca HOM05D002813 ORTHO05D003203 1.3e-15 87.8 235 32.8
FAN09G4302 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.7e-15 87.4 68 66.2
FvH4_2g32590 Fragaria vesca HOM05D002813 ORTHO05D003203 3.8e-15 86.3 250 29.6
FvH4_3g40700 Fragaria vesca HOM05D002813 ORTHO05D003203 3.8e-15 86.3 252 32.9
FAN24G0821 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.8e-15 86.3 250 29.6
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.0e-15 85.9 252 30.6
FAN02G0699 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.6e-15 85.1 234 33.3
FAN06G0128 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.6e-15 85.1 234 33.3
FAN06G0370 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.6e-15 85.1 234 33.3
FAN25G1955 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.6e-15 85.1 252 32.5
FAN25G2464 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.6e-15 85.1 234 33.3
FAN18G4406 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.1e-14 84.7 262 35.1
FvH4_7g29850 Fragaria vesca HOM05D002813 ORTHO05D003203 1.5e-14 84.3 234 32.9
FAN25G3517 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-14 84.3 159 46.5
FvH4_3g00150 Fragaria vesca HOM05D002813 ORTHO05D003203 1.9e-14 84.0 236 32.6
FAN04G1781 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.9e-14 84.0 261 29.9
FAN16G0815 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.3e-14 83.2 252 32.1
FvH4_3g30491 Fragaria vesca HOM05D002813 ORTHO05D003203 7.2e-14 82.0 78 57.7
FvH4_6g10172 Fragaria vesca HOM05D002813 ORTHO05D003203 7.2e-14 82.0 104 45.2
FAN14G5169 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.2e-14 82.0 234 33.3
FAN25G3196 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.6e-13 80.9 236 50.8
FvH4_5g10370 Fragaria vesca HOM05D002813 ORTHO05D003203 2.1e-13 80.5 238 29.0
FAN18G3569 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.1e-13 80.5 231 32.5
FAN21G3097 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.1e-13 80.5 232 31.5
FAN15G1989 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.8e-13 80.1 248 29.8
FvH4_3g11250 Fragaria vesca HOM05D002813 ORTHO05D003203 3.6e-13 79.7 191 55.5
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.6e-13 79.7 258 29.1
FAN02G4209 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.7e-13 79.3 192 35.4
FAN11G0908 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.7e-13 79.3 187 35.3
FAN08G0212 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.0e-13 78.6 230 31.7
FAN18G2715 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.0e-13 78.6 261 28.0
FvH4_2g32520 Fragaria vesca HOM05D002813 ORTHO05D003203 1.0e-12 78.2 242 29.3
FAN21G1994 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.0e-12 78.2 173 35.8
FAN27G1770 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.8e-12 77.4 258 28.3
FAN05G2846 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.3e-12 77.0 55 70.9
QL12p041348 Quercus lobata HOM05D002813 ORTHO05D003203 3.0e-12 76.6 187 33.7
RcHm_v2.0_Chr5g0073471 Rosa chinensis HOM05D002813 ORTHO05D003203 3.0e-12 76.6 288 29.2
FvH4_1g05120 Fragaria vesca HOM05D002813 ORTHO05D003203 4.0e-12 76.3 259 30.9
Gohir.A05G046700 Gossypium hirsutum HOM05D002813 ORTHO05D003203 4.0e-12 76.3 218 28.9
Gohir.D05G048500 Gossypium hirsutum HOM05D002813 ORTHO05D003203 4.0e-12 76.3 218 28.9
COL.COLO4_20970 Corchorus olitorius HOM05D006532 ORTHO05D008570 5.2e-12 75.9 171 49.1
FAN19G0454 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.2e-12 75.9 251 29.9
MSTRG.9106 Avicennia marina HOM05D002813 ORTHO05D003203 8.9e-12 75.1 189 38.6
FvH4_5g12190 Fragaria vesca HOM05D002813 ORTHO05D003203 1.5e-11 74.3 194 32.0
RcHm_v2.0_Chr6g0307021 Rosa chinensis HOM05D002813 ORTHO05D003203 2.0e-11 73.9 227 35.2
HanXRQChr12g0371751 Helianthus annuus HOM05D002813 ORTHO05D003203 2.6e-11 73.6 257 34.6
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 3.4e-11 73.2 185 32.4
FvH4_2g32610 Fragaria vesca HOM05D002813 ORTHO05D003203 4.4e-11 72.8 184 32.1
Gorai.009G049800 Gossypium raimondii HOM05D002813 ORTHO05D003203 4.4e-11 72.8 218 28.4
FvH4_2g32511 Fragaria vesca HOM05D002813 ORTHO05D003203 7.5e-11 72.0 191 30.4
FAN24G2117 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.5e-11 72.0 255 27.8
SEGI_38686 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 1.3e-10 71.2 189 28.6
Actinidia14674 Actinidia chinensis HOM05D002813 ORTHO05D003203 1.7e-10 70.9 185 31.4
HanXRQChr12g0371771 Helianthus annuus HOM05D002813 ORTHO05D003203 1.7e-10 70.9 257 33.9
Mapoly0100s0050 Marchantia polymorpha HOM05D002813 ORTHO05D003203 1.7e-10 70.9 186 28.0
FAN06G2895 Fragaria x ananassa HOM05D000201 ORTHO05D007118 2.8e-10 70.1 198 32.8
FAN06G4693 Fragaria x ananassa HOM05D000201 ORTHO05D007118 2.8e-10 70.1 198 32.8
Ciclev10010367m.g Citrus clementina HOM05D002813 ORTHO05D003203 6.3e-10 68.9 272 30.9
FvH4_5g19260 Fragaria vesca HOM05D002813 ORTHO05D003203 6.3e-10 68.9 69 55.1
GSVIVG01035624001 Vitis vinifera HOM05D002813 ORTHO05D003203 8.3e-10 68.6 185 32.4
FvH4_5g09361 Fragaria vesca HOM05D002813 ORTHO05D003203 1.1e-09 68.2 210 30.0
FAN15G1653 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.8e-09 67.4 147 33.3
FAN21G1333 Fragaria x ananassa HOM05D000259 ORTHO05D008185 1.8e-09 67.4 100 44.0
FvH4_2g32530 Fragaria vesca HOM05D002813 ORTHO05D003203 3.2e-09 66.6 190 30.5
FAN14G4337 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.2e-09 66.6 160 35.6
FAN18G2037 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.2e-09 66.6 69 53.6
FAN13G0724 Fragaria x ananassa HOM05D001362 ORTHO05D001310 4.1e-09 66.2 210 30.0
Atru.chr7.2088 Acer truncatum HOM05D002813 ORTHO05D003203 9.2e-09 65.1 184 27.7
CSS0022259 Camellia sinensis var. sinensis HOM05D002813 ORTHO05D003203 1.6e-08 64.3 155 32.9
Nitab4.5_0028416g0010 Nicotiana tabacum HOM05D002813 ORTHO05D003203 1.6e-08 64.3 182 31.3
Dinv27902 Davidia involucrata HOM05D002813 ORTHO05D003203 2.7e-08 63.5 201 28.9
FAN20G0435 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.5e-08 63.2 215 37.7
PGSC0003DMG400002228 Solanum tuberosum HOM05D002813 ORTHO05D003203 3.5e-08 63.2 230 26.1
FvH4_5g33281 Fragaria vesca HOM05D002813 ORTHO05D003203 4.5e-08 62.8 66 48.5
FAN18G2017 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.9e-08 62.4 66 48.5
FAN27G0414 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.9e-08 62.4 215 36.7
FvH4_6g41671 Fragaria vesca HOM05D002813 ORTHO05D003203 7.8e-08 62.0 185 28.1
FAN15G3400 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.8e-08 62.0 201 37.3
QL12p041358 Quercus lobata HOM05D002813 ORTHO05D003203 7.8e-08 62.0 187 27.8
FAN02G4465 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.0e-07 61.6 185 28.1
Duzib168G2404 Durio zibethinus HOM05D002813 ORTHO05D003203 1.3e-07 61.2 217 26.7
FAN17G1816 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.3e-07 61.2 73 50.7
FAN06G2359 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.7e-07 60.8 188 30.3
FAN18G0728 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.3e-07 60.5 64 48.4
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 2.3e-07 60.5 182 28.0
Cc08_g09560 Coffea canephora HOM05D002813 ORTHO05D003203 2.9e-07 60.1 187 40.1
RcHm_v2.0_Chr5g0073461 Rosa chinensis HOM05D002813 ORTHO05D003203 3.9e-07 59.7 68 44.1
FAN04G2105 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.0e-07 59.3 252 29.8
FAN21G2238 Fragaria x ananassa HOM05D000437 ORTHO05D003203 8.6e-07 58.5 141 34.8
HanXRQChr12g0371761 Helianthus annuus HOM05D002813 ORTHO05D003203 1.1e-06 58.2 186 26.3
FvH4_5g12211 Fragaria vesca HOM05D002813 ORTHO05D003203 1.5e-06 57.8 63 47.6
FAN15G1647 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-06 57.8 226 27.9
FAN08G0206 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.9e-06 57.4 148 33.1
FAN28G0350 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.9e-06 57.4 124 36.3
FvH4_5g12160 Fragaria vesca HOM05D002813 ORTHO05D003203 2.5e-06 57.0 252 29.4
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 3.3e-06 56.6 182 28.0
ECA233G4786 Erigeron canadensis HOM05D006532 ORTHO05D008570 7.3e-06 55.5 180 26.1
FAN04G1334 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.5e-06 55.1 116 31.0
FAN13G2791 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.5e-06 55.1 252 29.0
Nn2g11622 Nelumbo nucifera HOM05D002813 ORTHO05D003203 9.5e-06 55.1 157 29.9


User provided reference genes

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