Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3225 Fragaria x ananassa HOM05D005733 ORTHO05D007442 1.8e-145 519.2 256 100.0
FAN05G4341 Fragaria x ananassa HOM05D005733 ORTHO05D007442 1.8e-145 519.2 256 100.0
FAN17G0482 Fragaria x ananassa HOM05D005733 ORTHO05D007442 8.2e-119 430.6 278 82.0
FAN12G3847 Fragaria x ananassa HOM05D005733 ORTHO05D007442 1.4e-118 429.9 278 80.6
FvH4_4g23510 Fragaria vesca HOM05D005733 ORTHO05D007442 3.1e-86 322.4 177 91.0
RcHm_v2.0_Chr4g0404931 Rosa chinensis HOM05D005733 ORTHO05D007442 2.3e-81 306.2 177 86.4
TWI63G0727 Tripterygium wilfordii HOM05D005733 ORTHO05D007442 1.2e-72 277.3 180 76.7
GSVIVG01023749001 Vitis vinifera HOM05D005733 ORTHO05D007442 2.6e-72 276.2 177 76.8
MD16G1262600 Malus domestica HOM05D005733 ORTHO05D007442 3.4e-72 275.8 177 76.8
CiPaw.07G186800 Carya illinoinensis HOM05D005733 ORTHO05D007442 1.9e-70 270.0 178 74.2
QL02p095666 Quercus lobata HOM05D005733 ORTHO05D007442 1.9e-70 270.0 180 75.0
Glyma.13G091800 Glycine max HOM05D005733 ORTHO05D007442 2.4e-70 269.6 177 75.1
Cfa013546 Carpinus fangiana HOM05D005733 ORTHO05D007442 4.1e-70 268.9 177 75.1
Atru.chr7.506 Acer truncatum HOM05D005733 ORTHO05D007442 5.4e-70 268.5 178 75.8
arahy.Tifrunner.gnm1.ann1.0JVE27 Arachis hypogaea HOM05D005733 ORTHO05D007442 1.6e-69 266.9 175 74.9
arahy.Tifrunner.gnm1.ann1.GE8FUD Arachis hypogaea HOM05D005733 ORTHO05D007442 2.7e-69 266.2 177 74.0
Duzib187G0641 Durio zibethinus HOM05D005733 ORTHO05D007442 2.7e-69 266.2 177 72.9
Glyma.17G068500 Glycine max HOM05D005733 ORTHO05D007442 3.5e-69 265.8 177 74.0
Thecc.09G161700 Theobroma cacao HOM05D005733 ORTHO05D007442 4.6e-69 265.4 177 73.4
CSS0014936 Camellia sinensis var. sinensis HOM05D005733 ORTHO05D007442 6.0e-69 265.0 175 74.9
TAR383G0601 Trochodendron aralioides HOM05D005733 ORTHO05D007442 6.0e-69 265.0 175 74.9
Actinidia20956 Actinidia chinensis HOM05D005733 ORTHO05D007442 1.3e-68 263.8 177 72.9
Lj9A728T23 Lonicera japonica HOM05D005733 ORTHO05D007442 3.0e-68 262.7 177 71.8
Sabra06G0134700 Salix brachista HOM05D005733 ORTHO05D007442 3.9e-68 262.3 177 72.3
Gorai.004G103800 Gossypium raimondii HOM05D005733 ORTHO05D007442 5.1e-68 261.9 178 71.9
PGR142G3644 Punica granatum HOM05D005733 ORTHO05D007442 6.6e-68 261.5 175 72.6
COL.COLO4_27474 Corchorus olitorius HOM05D005733 ORTHO05D007442 8.6e-68 261.2 177 71.8
Oeu058827.1 Olea europaea HOM05D005733 ORTHO05D007442 1.5e-67 260.4 177 73.4
Potri.006G176500 Populus trichocarpa HOM05D005733 ORTHO05D007442 1.5e-67 260.4 177 72.9
Hma1.2p1_1531F.1_g289230 Hydrangea macrophylla HOM05D005733 ORTHO05D007442 4.3e-67 258.8 177 72.9
Prupe.1G097300 Prunus persica HOM05D005733 ORTHO05D007442 7.3e-67 258.1 164 78.7
Rhsim01G0012100 Rhododendron simsii HOM05D005733 ORTHO05D007442 7.3e-67 258.1 175 70.9
Sed0012123 Sechium edule HOM05D005733 ORTHO05D007442 7.3e-67 258.1 175 71.4
MBI14_g08080_MAGBIO Magnolia biondii HOM05D005733 ORTHO05D007442 1.6e-66 256.9 175 70.9
CANSAT11G0464 Cannabis sativa HOM05D005733 ORTHO05D007442 2.1e-66 256.5 177 71.2
Phvul.003G151100 Phaseolus vulgaris HOM05D005733 ORTHO05D007442 2.1e-66 256.5 177 72.3
MSTRG.19675 Avicennia marina HOM05D005733 ORTHO05D007442 2.8e-66 256.1 175 72.6
Sc08g0005630 Simmondsia chinensis HOM05D005733 ORTHO05D007442 2.8e-66 256.1 177 71.8
vmacro13073 Vaccinium macrocarpon HOM05D005733 ORTHO05D007442 4.7e-66 255.4 179 69.3
EL10Ac8g18867 Beta vulgaris HOM05D005733 ORTHO05D007442 8.1e-66 254.6 177 70.1
VMungo1215G3105 Vigna mungo HOM05D005733 ORTHO05D007442 8.1e-66 254.6 177 72.3
CsaV3_7G001070 Cucumis sativus L. HOM05D005733 ORTHO05D007442 1.8e-65 253.4 176 69.3
Lj4g0011389 Lotus japonicus HOM05D005733 ORTHO05D007442 1.8e-65 253.4 180 70.6
Hund08988 Selenicereus undatus HOM05D005733 ORTHO05D007442 1.8e-65 253.4 177 71.2
SalBow6G0174 Salvia bowleyana HOM05D005733 ORTHO05D007442 2.3e-65 253.1 177 69.5
Ciclev10010607m.g Citrus clementina HOM05D005733 ORTHO05D007442 3.1e-65 252.7 177 68.9
Medtr4g129490 Medicago truncatula HOM05D005733 ORTHO05D007442 5.2e-65 251.9 177 70.6
TPR.G5298 Trifolium pratense HOM05D005733 ORTHO05D007442 5.2e-65 251.9 177 69.5
SGA_v2.0_scaffold66G22515 Striga asiatica HOM05D005733 ORTHO05D007442 1.5e-64 250.4 188 67.0
Ca_21184_v3 Cicer arietinum L. HOM05D005733 ORTHO05D007442 2.0e-64 250.0 177 68.9
Aa31LG7G2230 Aethionema arabicum HOM05D005733 ORTHO05D007442 2.6e-64 249.6 177 70.1
Psat4g048120 Pisum sativum HOM05D005733 ORTHO05D007442 4.4e-64 248.8 177 68.9
THA.LOC104811821 Tarenaya hassleriana HOM05D005733 ORTHO05D007442 4.4e-64 248.8 177 68.9
MELO3C013348.2 Cucumis melo HOM05D005733 ORTHO05D007442 5.8e-64 248.4 178 68.0
Manes.06G030000 Manihot esculenta HOM05D005733 ORTHO05D007442 1.3e-63 247.3 208 62.0
Migut.J01418 Erythranthe guttata HOM05D005733 ORTHO05D007442 3.7e-63 245.7 175 69.1
Aqoxy7G03235 Aquilegia oxysepala HOM05D005733 ORTHO05D007442 6.4e-63 245.0 175 67.4
Aa31sc193G30 Aethionema arabicum HOM05D005733 ORTHO05D007442 3.2e-62 242.7 175 70.3
PSO063G5638 Papaver somniferum HOM05D005733 ORTHO05D007442 5.4e-62 241.9 175 67.4
ATR0580G232 Amborella trichopoda HOM05D005733 ORTHO05D007442 7.1e-62 241.5 175 68.6
Cpa.g.sc75.16 Carica papaya HOM05D005733 ORTHO05D007442 7.1e-62 241.5 228 57.0
CARHR235730 Cardamine hirsuta HOM05D005733 ORTHO05D007442 9.2e-62 241.1 180 66.7
Carub.0007s1276 Capsella rubella HOM05D005733 ORTHO05D007442 1.2e-61 240.7 180 65.0
Cc06_g14000 Coffea canephora HOM05D005733 ORTHO05D007442 1.2e-61 240.7 177 66.1
Thhalv10025984m.g Eutrema salsugineum HOM05D005733 ORTHO05D007442 1.2e-61 240.7 175 67.4
AL7G24580 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 2.7e-61 239.6 175 68.0
AT4G28030 Arabidopsis thaliana HOM05D005733 ORTHO05D007442 6.0e-61 238.4 175 68.0
DCAR_014719 Daucus carota HOM05D005733 ORTHO05D007442 1.0e-60 237.7 178 66.3
BraA03t14833Z Brassica rapa HOM05D005733 ORTHO05D007442 1.3e-60 237.3 175 67.4
ClCG02G004040 Citrullus lanatus HOM05D005733 ORTHO05D007442 1.7e-60 236.9 206 60.2
Eucgr.C01245 Eucalyptus grandis HOM05D005733 ORTHO05D007442 2.3e-60 236.5 179 66.5
HanXRQChr10g0284091 Helianthus annuus HOM05D005733 ORTHO05D007442 2.3e-60 236.5 177 67.8
A03p57670 Brassica napus HOM05D005733 ORTHO05D007442 3.0e-60 236.1 175 66.9
Lalb_Chr13g0300531 Lupinus albus HOM05D005733 ORTHO05D007442 3.0e-60 236.1 177 68.4
PSO782G5004 Papaver somniferum HOM05D005733 ORTHO05D007442 3.9e-60 235.7 175 65.1
Sp7g25980 Schrenkiella parvula HOM05D005733 ORTHO05D007442 8.6e-60 234.6 175 66.3
Peaxi162Scf00525g00817 Petunia axillaris HOM05D005733 ORTHO05D007442 1.1e-59 234.2 177 66.1
BcaC06g32650 Brassica carinata HOM05D005733 ORTHO05D007442 1.9e-59 233.4 175 66.3
Lsat_1_v5_gn_8_64360 Lactuca sativa HOM05D005733 ORTHO05D007442 4.3e-59 232.3 177 65.5
CDE02G3066 Ceratophyllum demersum HOM05D005733 ORTHO05D007442 5.6e-59 231.9 171 67.8
CAN.G1870.3 Capsicum annuum HOM05D005733 ORTHO05D007442 7.3e-59 231.5 175 64.0
Nitab4.5_0005985g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 1.6e-58 230.3 175 64.0
Solyc07g006340.3 Solanum lycopersicum HOM05D005733 ORTHO05D007442 1.6e-58 230.3 175 64.6
Sopen07g002430 Solanum pennellii HOM05D005733 ORTHO05D007442 1.6e-58 230.3 175 64.6
PGSC0003DMG402011224 Solanum tuberosum HOM05D005733 ORTHO05D007442 1.6e-58 230.3 175 64.6
C07p55880 Brassica napus HOM05D005733 ORTHO05D007442 6.2e-58 228.4 175 65.7
Psat4g010480 Pisum sativum HOM05D005733 ORTHO05D007442 6.8e-57 224.9 164 67.7
unitig_0.g187 Utricularia gibba HOM05D005733 ORTHO05D007442 1.5e-51 207.2 166 63.3
HPP92_025686 Vanilla planifolia HOM05D005733 ORTHO05D007442 1.6e-50 203.8 176 58.0
ECA236G1842 Erigeron canadensis HOM05D005733 ORTHO05D007442 1.5e-48 197.2 184 56.0
Nn4g23704 Nelumbo nucifera HOM05D005733 ORTHO05D007442 7.6e-48 194.9 175 58.9
Haze_22166 Corylus avellana HOM05D005733 ORTHO05D007442 1.4e-46 190.7 122 77.0
Gohir.A08G096462 Gossypium hirsutum HOM05D005733 ORTHO05D007442 1.1e-43 181.0 122 72.1
AUR62028411 Chenopodium quinoa HOM05D005733 ORTHO05D007442 1.5e-43 180.6 121 71.1
AUR62039751 Chenopodium quinoa HOM05D005733 ORTHO05D007442 3.3e-43 179.5 121 70.2
Zm00001eb412590 Zea mays HOM05D005733 ORTHO05D007442 3.1e-41 172.9 151 58.3
FAN07G2740 Fragaria x ananassa HOM05D005733 ORTHO05D007442 2.2e-39 166.8 87 93.1
Cc00_g30300 Coffea canephora HOM05D005733 ORTHO05D007442 1.1e-38 164.5 121 63.6
CDE05G3532 Ceratophyllum demersum HOM05D001854 ORTHO05D001800 8.7e-36 154.8 120 63.3
Nitab4.5_0005551g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 8.1e-34 148.3 113 61.9
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 1.3e-31 141.0 175 43.4
AL3G40460 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 2.2e-31 140.2 109 64.2
Gohir.D08G097100 Gossypium hirsutum HOM05D005733 ORTHO05D007442 9.3e-30 134.8 89 73.0
AL7G30680 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 6.7e-28 128.6 109 61.5
Dinv41304 Davidia involucrata HOM05D005733 ORTHO05D007442 6.7e-28 128.6 87 72.4
Pp3c1_4600 Physcomitrium patens HOM05D005733 ORTHO05D007442 6.7e-28 128.6 179 44.1
AL6G37990 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 8.7e-28 128.3 109 61.5
AL1G31260 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 1.1e-27 127.9 109 61.5
Mapoly0019s0038 Marchantia polymorpha HOM05D005733 ORTHO05D007442 2.5e-27 126.7 179 40.2
Ah.14g084100 Amaranthus hybridus HOM05D005733 ORTHO05D007442 8.2e-26 121.7 181 41.4
AagrBONN_evm.TU.Sc2ySwM_344.3527 Anthoceros agrestis HOM05D005733 ORTHO05D007442 6.9e-25 118.6 188 40.4
BcaC09g50518 Brassica carinata HOM05D005733 ORTHO05D007442 3.4e-24 116.3 155 47.1
Psat4g048000 Pisum sativum HOM05D005733 ORTHO05D007442 3.2e-22 109.8 79 69.6
Os08g0260000 Oryza sativa ssp. japonica HOM05D005733 ORTHO05D007442 5.1e-20 102.4 86 55.8
C01p24460 Brassica napus HOM05D005733 ORTHO05D007442 1.9e-19 100.5 83 62.7
Pp3c11_5280 Physcomitrium patens HOM05D005733 ORTHO05D007442 9.0e-17 91.7 191 33.0
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 3.8e-15 86.3 122 43.4
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 3.8e-15 86.3 122 43.4
Cre02.g084550 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D007442 1.1e-14 84.7 207 36.2
arahy.Tifrunner.gnm1.ann1.IUS3AS Arachis hypogaea HOM05D005733 ORTHO05D007442 1.9e-14 84.0 67 56.7
BolC2t09466H Brassica oleracea HOM05D005733 ORTHO05D007442 1.9e-14 84.0 113 46.9
arahy.Tifrunner.gnm1.ann1.65BVJ7 Arachis hypogaea HOM05D005733 ORTHO05D007442 5.5e-14 82.4 57 68.4
C02p34360 Brassica napus HOM05D005733 ORTHO05D007442 5.5e-14 82.4 113 46.0
Haze_22164 Corylus avellana HOM05D005733 ORTHO05D007442 2.1e-13 80.5 55 70.9
Hund26406 Selenicereus undatus HOM05D005733 ORTHO05D007442 3.6e-13 79.7 87 47.1
AL1G53920 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 3.9e-12 76.3 123 38.2
MCO03G095 Micromonas commoda HOM05D005733 ORTHO05D007442 6.3e-10 68.9 82 47.6
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.4e-09 67.0 51 56.9
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 4.5e-08 62.8 190 30.0
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 7.7e-08 62.0 190 29.5
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 2.9e-07 60.1 161 30.4
CAN.G484.8 Capsicum annuum HOM05D004023 ORTHO05D004681 6.5e-07 58.9 183 30.1
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 1.9e-06 57.4 161 29.8
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 2.5e-06 57.0 162 30.9
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 3.2e-06 56.6 164 31.1
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 3.2e-06 56.6 44 59.1
TAR369G0443 Trochodendron aralioides HOM05D004023 ORTHO05D004681 3.2e-06 56.6 163 30.7
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 3.2e-06 56.6 185 27.0
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 5.5e-06 55.8 118 29.7
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 9.4e-06 55.1 159 30.2
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 9.4e-06 55.1 160 28.8
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 9.4e-06 55.1 171 28.1
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 9.4e-06 55.1 162 30.9


User provided reference genes

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