Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.1e-69 265.0 131 100.0
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.1e-69 265.0 131 100.0
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.4e-68 261.5 131 98.5
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 3.2e-66 255.0 131 96.9
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.2e-66 255.0 131 96.9
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 2.0e-60 235.7 132 92.4
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 4.1e-58 228.0 131 88.5
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 4.4e-36 154.8 138 68.1
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 7.6e-36 154.1 136 66.2
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 1.5e-28 129.8 113 69.9
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 8.4e-27 124.0 138 54.3
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 1.4e-26 123.2 123 59.3
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 2.4e-26 122.5 127 57.5
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 7.1e-26 120.9 136 54.4
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 9.3e-26 120.6 140 55.0
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.2e-25 120.2 127 56.7
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 1.6e-25 119.8 133 55.6
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 3.5e-25 118.6 137 52.6
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 3.9e-24 115.2 134 54.5
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 6.7e-24 114.4 141 51.8
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 8.7e-24 114.0 130 50.8
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 4.3e-23 111.7 93 66.7
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 1.3e-22 110.2 140 50.0
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 1.6e-22 109.8 137 48.9
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 2.1e-22 109.4 137 46.7
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 2.8e-22 109.0 115 57.4
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 4.8e-22 108.2 139 48.2
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 6.2e-22 107.8 140 53.6
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 1.1e-21 107.1 115 57.4
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 2.4e-21 105.9 142 52.1
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 2.4e-21 105.9 129 48.8
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 3.1e-21 105.5 138 48.6
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 3.4e-20 102.1 138 47.8
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 4.5e-20 101.7 122 52.5
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 7.6e-20 100.9 134 44.8
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 2.2e-19 99.4 142 44.4
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.9e-19 99.0 141 44.7
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.9e-19 99.0 141 44.7
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 3.8e-19 98.6 126 47.6
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 1.1e-18 97.1 112 54.5
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 1.1e-18 97.1 121 55.4
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.4e-18 96.7 96 59.4
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 5.5e-18 94.7 148 43.2
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 7.1e-18 94.4 93 64.5
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 1.2e-17 93.6 140 45.7
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 2.1e-17 92.8 122 46.7
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 3.5e-17 92.0 120 48.3
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 4.6e-17 91.7 140 42.1
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 4.6e-17 91.7 163 41.7
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 6.0e-17 91.3 123 45.5
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 6.0e-17 91.3 140 45.0
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 6.0e-17 91.3 142 43.7
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 7.9e-17 90.9 97 56.7
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 1.0e-16 90.5 98 56.1
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.8e-16 89.7 142 43.7
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 3.0e-16 89.0 135 45.2
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 5.1e-16 88.2 97 53.6
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 6.7e-16 87.8 124 44.4
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 8.7e-16 87.4 137 44.5
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 8.7e-16 87.4 131 46.6
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 2.5e-15 85.9 125 45.6
PGR142G0458 Punica granatum HOM05D005113 ORTHO05D006045 4.3e-15 85.1 124 43.5
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 5.7e-15 84.7 97 54.6
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 7.4e-15 84.3 99 52.5
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 9.6e-15 84.0 136 40.4
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.3e-14 83.6 132 43.9
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 2.1e-14 82.8 136 41.2
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 2.8e-14 82.4 131 42.0
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 2.8e-14 82.4 129 47.3
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 2.8e-14 82.4 130 41.5
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 3.7e-14 82.0 86 55.8
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 6.3e-14 81.3 119 47.1
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 8.2e-14 80.9 132 44.7
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 1.4e-13 80.1 101 50.5
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 1.4e-13 80.1 107 50.5
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 1.8e-13 79.7 124 41.1
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 1.8e-13 79.7 95 53.7
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 2.4e-13 79.3 93 52.7
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 3.1e-13 79.0 137 42.3
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.1e-13 79.0 119 43.7
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 3.1e-13 79.0 125 41.6
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 4.1e-13 78.6 90 55.6
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 5.3e-13 78.2 97 50.5
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 5.3e-13 78.2 121 43.8
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 5.3e-13 78.2 118 45.8
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.5e-12 76.6 93 50.5
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 1.5e-12 76.6 100 51.0
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 1.5e-12 76.6 100 51.0
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 1.5e-12 76.6 100 51.0
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 1.5e-12 76.6 100 51.0
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 1.5e-12 76.6 100 51.0
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 1.5e-12 76.6 100 51.0
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 1.5e-12 76.6 107 48.6
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 2.0e-12 76.3 100 52.0
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 3.4e-12 75.5 137 40.9
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 3.4e-12 75.5 86 52.3
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 3.4e-12 75.5 125 42.4
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 3.4e-12 75.5 125 40.0
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 3.4e-12 75.5 93 49.5
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 4.5e-12 75.1 123 43.9
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 1.0e-11 73.9 124 40.3
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 1.0e-11 73.9 123 43.1
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 1.0e-11 73.9 126 42.1
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 1.7e-11 73.2 105 50.5
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 2.2e-11 72.8 93 48.4
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 3.8e-11 72.0 93 48.4
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 3.8e-11 72.0 93 48.4
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 5.0e-11 71.6 89 49.4
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 8.4e-11 70.9 93 48.4
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 8.4e-11 70.9 93 48.4
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 8.4e-11 70.9 93 48.4
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 1.4e-10 70.1 106 44.3
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 1.4e-10 70.1 132 42.4
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 1.9e-10 69.7 98 45.9
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 3.2e-10 68.9 126 42.9
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 7.2e-10 67.8 104 47.1
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 1.2e-09 67.0 89 48.3
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 2.7e-09 65.9 98 46.9
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 2.7e-09 65.9 132 37.1
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 3.5e-09 65.5 124 37.9
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 4.6e-09 65.1 88 50.0
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 4.6e-09 65.1 105 41.0
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 4.6e-09 65.1 112 43.8
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 6.1e-09 64.7 132 36.4
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 7.9e-09 64.3 116 43.1
Lsat_1_v5_gn_7_45161 Lactuca sativa HOM05D002758 ORTHO05D002885 2.3e-08 62.8 124 35.5
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 3.0e-08 62.4 116 41.4
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 6.7e-08 61.2 135 34.8
CDE07G0213 Ceratophyllum demersum HOM05D005113 ORTHO05D006045 1.5e-07 60.1 130 35.4
arahy.Tifrunner.gnm1.ann1.I8YMJK Arachis hypogaea HOM05D005113 ORTHO05D006045 2.5e-07 59.3 129 36.4
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 2.5e-07 59.3 97 43.3
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 5.7e-07 58.2 91 40.7
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 5.7e-07 58.2 91 40.7
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 5.7e-07 58.2 98 42.9
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 5.7e-07 58.2 91 40.7
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 9.7e-07 57.4 88 44.3
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 1.3e-06 57.0 98 42.9
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 1.6e-06 56.6 91 39.6
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 1.6e-06 56.6 91 39.6
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 2.2e-06 56.2 120 38.3
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 2.8e-06 55.8 98 41.8
Phvul.007G265600 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 8.2e-06 54.3 139 30.9


User provided reference genes

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