Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3157 Fragaria x ananassa HOM05D017088 ORTHO05D012721 1.2e-118 429.9 223 100.0
FvH4_6g41370 Fragaria vesca HOM05D017088 ORTHO05D012721 3.6e-110 401.7 223 93.7
FAN14G5034 Fragaria x ananassa HOM05D017088 ORTHO05D012721 1.5e-108 396.4 223 92.8
FAN02G2874 Fragaria x ananassa HOM05D017088 ORTHO05D012721 1.3e-104 383.3 218 93.6
RcHm_v2.0_Chr2g0156911 Rosa chinensis HOM05D017088 ORTHO05D012721 2.8e-83 312.4 183 86.9
FAN09G4455 Fragaria x ananassa HOM05D017088 ORTHO05D012721 4.3e-63 245.4 133 98.5
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.9e-21 105.1 189 36.5
FAN09G1363 Fragaria x ananassa HOM05D017088 ORTHO05D012721 1.5e-20 104.0 54 94.4
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.4e-20 102.8 163 36.8
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 7.6e-20 101.7 191 34.0
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.2e-19 100.1 188 32.4
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.2e-19 100.1 188 32.4
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 5.5e-18 95.5 189 34.4
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.0e-16 89.7 188 32.4
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 3.9e-16 89.4 188 32.4
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 3.9e-16 89.4 188 32.4
TAR636G1837 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.1e-16 89.0 165 32.7
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 6.7e-16 88.6 188 31.4
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 8.7e-16 88.2 188 33.0
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.1e-15 87.8 181 32.0
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.1e-15 87.8 188 30.9
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 4.3e-15 85.9 188 29.8
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 5.6e-15 85.5 188 29.3
TAR636G0890 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.6e-15 85.5 158 32.9
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 7.4e-15 85.1 188 31.9
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 7.4e-15 85.1 188 28.7
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 7.4e-15 85.1 188 28.7
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 1.3e-14 84.3 216 29.2
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 1.3e-14 84.3 184 31.0
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 1.3e-14 84.3 184 31.0
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 2.1e-14 83.6 188 29.3
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 2.1e-14 83.6 188 28.7
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 4.8e-14 82.4 188 29.3
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 6.2e-14 82.0 188 34.0
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 1.4e-13 80.9 176 29.5
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 1.4e-13 80.9 177 31.1
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 1.8e-13 80.5 176 30.1
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 2.0e-12 77.0 181 29.8
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.0e-12 77.0 216 28.2
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.0e-12 77.0 213 28.6
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 5.8e-12 75.5 189 31.7
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 5.8e-12 75.5 208 27.4
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.0e-11 74.7 196 26.0
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 1.3e-11 74.3 200 28.5
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 1.3e-11 74.3 186 31.7
CSS0036580 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 2.2e-11 73.6 190 28.9
CDE04G2921 Ceratophyllum demersum HOM05D002687 ORTHO05D002052 2.2e-11 73.6 188 31.9
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 2.2e-11 73.6 194 28.9
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 2.2e-11 73.6 197 29.4
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 3.8e-11 72.8 197 29.4
Lj1A303T25 Lonicera japonica HOM05D037926 ORTHO05D012721 3.8e-11 72.8 193 30.1
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 3.8e-11 72.8 189 29.1
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 3.8e-11 72.8 191 31.9
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 4.9e-11 72.4 187 28.3
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 6.5e-11 72.0 191 30.4
Rhsim04G0206200 Rhododendron simsii HOM05D018759 ORTHO05D012721 6.5e-11 72.0 201 31.8
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 6.5e-11 72.0 197 28.4
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 8.4e-11 71.6 186 28.0
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 1.1e-10 71.2 191 29.3
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 1.4e-10 70.9 188 27.1
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 1.4e-10 70.9 195 26.2
Nn2g14283 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.4e-10 70.9 188 26.1
MD12G1038800 Malus domestica HOM05D002687 ORTHO05D002052 1.9e-10 70.5 196 28.6
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 2.5e-10 70.1 189 28.0
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 4.2e-10 69.3 191 30.4
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 5.5e-10 68.9 190 30.0
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 5.5e-10 68.9 188 28.2
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 7.1e-10 68.6 183 26.2
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 7.1e-10 68.6 184 26.1
Medtr2g087000 Medicago truncatula HOM05D002687 ORTHO05D002052 7.1e-10 68.6 196 26.0
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 9.3e-10 68.2 199 26.6
arahy.Tifrunner.gnm1.ann1.AI123M Arachis hypogaea HOM05D002687 ORTHO05D002052 1.2e-09 67.8 196 26.0
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.6e-09 67.4 190 28.9
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 2.7e-09 66.6 183 24.6
CDE12G0475 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 4.6e-09 65.9 188 28.7
Psat5g260320 Pisum sativum HOM05D002687 ORTHO05D002052 4.6e-09 65.9 194 25.8
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 4.6e-09 65.9 190 26.8
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 6.0e-09 65.5 191 29.3
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 6.0e-09 65.5 197 26.4
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 6.0e-09 65.5 188 26.6
Lj3g0009280 Lotus japonicus HOM05D002687 ORTHO05D002052 1.0e-08 64.7 191 27.7
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 1.0e-08 64.7 197 26.9
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.0e-08 64.7 186 26.3
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 2.3e-08 63.5 190 25.3
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 3.0e-08 63.2 175 28.6
Dinv31534 Davidia involucrata HOM05D002687 ORTHO05D002052 3.0e-08 63.2 176 30.7
RcHm_v2.0_Chr3g0475711 Rosa chinensis HOM05D002687 ORTHO05D002052 3.0e-08 63.2 198 26.3
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 3.9e-08 62.8 184 25.5
CAN.G1922.4 Capsicum annuum HOM05D002687 ORTHO05D002052 6.7e-08 62.0 120 32.5
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 1.5e-07 60.8 181 26.5
FAN14G3199 Fragaria x ananassa HOM05D029328 ORTHO05D002052 1.9e-07 60.5 158 27.2
MD14G1037500 Malus domestica HOM05D002687 ORTHO05D002052 1.9e-07 60.5 194 26.8
Haze_23312 Corylus avellana HOM05D002687 ORTHO05D002052 2.5e-07 60.1 212 23.1
FvH4_6g20177 Fragaria vesca HOM05D002687 ORTHO05D002052 7.4e-07 58.5 179 25.7
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 9.6e-07 58.2 191 26.2
Actinidia37067 Actinidia chinensis HOM05D002687 ORTHO05D002052 1.3e-06 57.8 191 27.7
Lj1P303T22 Lonicera japonica HOM05D023306 ORTHO05D002052 1.6e-06 57.4 169 26.6
CiPaw.04G111600 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.8e-06 56.6 213 25.8
FAN24G1312 Fragaria x ananassa HOM05D009841 ORTHO05D045543 2.8e-06 56.6 195 23.1
Lalb_Chr14g0376011 Lupinus albus HOM05D002687 ORTHO05D002052 2.8e-06 56.6 178 23.6
Psat0s3916g0200 Pisum sativum HOM05D002687 ORTHO05D002052 2.8e-06 56.6 192 28.1
Eucgr.B03820 Eucalyptus grandis HOM05D002687 ORTHO05D002052 4.8e-06 55.8 184 27.2
Hma1.2p1_0388F.1_g142370 Hydrangea macrophylla HOM05D002137 ORTHO05D002144 6.3e-06 55.5 158 25.3


User provided reference genes

Program Settings