Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.4e-284 982.2 479 100.0
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 3.1e-276 954.5 470 98.5
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 5.6e-270 933.7 470 97.0
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 6.9e-252 873.6 478 89.3
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 5.7e-214 747.7 480 76.5
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.3e-205 719.9 474 76.2
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 2.9e-202 708.8 474 75.1
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 6.6e-170 601.3 483 62.7
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 4.3e-169 598.6 476 64.3
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 3.6e-168 595.5 494 61.1
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 3.6e-168 595.5 494 61.1
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.0e-167 594.0 477 61.6
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 5.8e-166 588.2 476 62.4
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 4.9e-165 585.1 479 61.0
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 3.2e-164 582.4 481 61.5
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.7e-162 576.6 481 61.1
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 1.1e-161 573.9 476 61.6
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 2.5e-161 572.8 477 60.6
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 4.3e-161 572.0 481 59.5
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 1.6e-160 570.1 473 60.5
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.1e-160 569.7 476 60.9
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.1e-160 569.7 476 60.9
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.0e-159 565.5 476 60.5
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 5.2e-159 565.1 483 59.2
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 6.8e-159 564.7 475 59.6
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 3.4e-158 562.4 474 59.7
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 1.4e-156 557.0 481 59.5
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.2e-156 555.8 501 57.7
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 3.2e-156 555.8 476 58.4
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 4.1e-156 555.4 483 59.2
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 1.6e-155 553.5 500 58.6
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 7.8e-155 551.2 496 59.7
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-152 543.5 478 57.3
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 6.8e-151 538.1 480 57.7
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 2.0e-150 536.6 476 57.1
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 2.0e-150 536.6 479 59.3
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 5.8e-150 535.0 478 57.9
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 7.8e-147 524.6 479 55.1
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 1.3e-146 523.9 477 55.1
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 3.1e-143 512.7 473 55.8
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 7.6e-142 508.1 497 56.1
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 1.3e-141 507.3 479 54.9
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 3.8e-141 505.8 477 53.9
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 5.4e-140 501.9 490 53.9
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 1.6e-139 500.4 475 55.2
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 3.5e-139 499.2 478 54.2
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 1.7e-138 496.9 479 53.4
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 6.6e-138 495.0 474 54.6
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.1e-137 494.2 469 55.0
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.5e-137 493.8 475 53.9
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.5e-137 493.0 482 52.7
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 9.6e-137 491.1 474 53.6
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 1.3e-136 490.7 498 51.0
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 4.0e-135 485.7 481 52.0
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 6.9e-135 485.0 476 52.7
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 6.9e-135 485.0 480 51.5
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 1.5e-134 483.8 477 51.2
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 2.0e-134 483.4 482 52.5
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.6e-134 483.0 481 50.7
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 5.8e-134 481.9 486 52.3
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.2e-132 475.7 471 54.4
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 4.2e-132 475.7 501 50.7
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 2.1e-131 473.4 484 51.7
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 4.6e-131 472.2 494 50.2
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 7.9e-131 471.5 494 50.6
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 3.9e-130 469.2 487 51.5
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 2.8e-128 463.0 474 49.8
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 8.1e-128 461.5 492 50.6
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 8.1e-128 461.5 476 52.3
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.1e-127 461.1 500 49.2
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 1.1e-127 461.1 491 50.7
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 3.1e-127 459.5 478 50.4
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 6.9e-127 458.4 519 47.4
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 3.8e-125 452.6 480 47.7
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 4.9e-125 452.2 415 56.1
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.1e-124 451.1 482 46.9
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 7.1e-124 448.4 481 47.4
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 7.1e-124 448.4 481 50.7
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 4.6e-123 445.7 474 47.9
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.0e-122 444.5 471 50.5
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 5.1e-122 442.2 475 47.4
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 6.7e-122 441.8 476 49.4
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 2.8e-120 436.4 477 48.4
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 2.8e-120 436.4 476 48.1
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 3.7e-120 436.0 478 48.5
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 3.7e-120 436.0 478 50.8
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 4.8e-120 435.6 477 48.4
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 6.2e-120 435.3 474 46.8
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 8.1e-120 434.9 474 46.8
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.4e-119 434.1 465 48.2
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 3.1e-119 433.0 476 48.5
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 5.3e-119 432.2 476 47.5
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 3.4e-118 429.5 484 46.1
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.3e-117 427.6 481 47.6
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 8.4e-117 424.9 474 49.6
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.2e-116 422.5 475 46.3
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 5.5e-116 422.2 472 48.5
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 1.3e-114 417.5 469 49.7
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 6.7e-114 415.2 487 46.0
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.9e-109 399.8 472 46.8
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 3.8e-109 399.4 508 43.5
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 5.1e-106 389.0 425 49.2
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 5.1e-106 389.0 469 45.6
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 2.2e-104 383.6 485 42.9
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 1.5e-102 377.5 501 42.7
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.0e-98 364.8 436 48.2
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.8e-98 361.7 476 42.0
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 6.3e-96 355.5 476 42.4
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 1.4e-95 354.4 477 43.6
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 9.1e-95 351.7 473 42.9
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 4.5e-94 349.4 472 43.4
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 5.9e-94 349.0 486 42.2
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 3.8e-93 346.3 488 41.6
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.6e-91 339.7 156 100.0
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 6.7e-90 335.5 484 40.9
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 1.7e-88 330.9 484 39.5
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 3.7e-88 329.7 484 39.5
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 3.1e-87 326.6 480 40.0
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.2e-83 314.7 476 39.1
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 7.5e-73 278.9 515 34.8
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 3.5e-70 270.0 441 37.2
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.0e-69 266.2 461 38.0
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.0e-66 256.5 461 37.3
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-65 254.2 478 34.5
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.8e-57 225.3 429 35.7
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.7e-56 224.6 429 35.4
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 2.1e-51 207.6 483 30.0
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 6.4e-48 196.1 173 57.2
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-44 185.3 411 32.8
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-44 185.3 411 32.8
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 5.6e-44 183.0 487 29.8
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 9.5e-44 182.2 250 45.2
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-38 164.9 345 33.6
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.9e-37 160.2 436 29.4
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 2.5e-36 157.5 485 29.5
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 4.3e-36 156.8 492 27.4
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 4.0e-34 150.2 263 36.9
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 8.9e-34 149.1 87 79.3
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 2.9e-32 144.1 455 25.5
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 4.9e-32 143.3 469 26.2
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 7.6e-25 119.4 98 63.3
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 1.7e-21 108.2 439 23.5
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.1e-18 97.4 302 28.8
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 3.5e-14 84.0 186 31.7
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 6.0e-14 83.2 441 21.5
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 8.7e-13 79.3 403 20.8
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 1.3e-11 75.5 91 39.6
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 3.6e-11 73.9 101 37.6
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.8e-10 71.6 82 45.1
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 2.4e-10 71.2 91 38.5
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 4.0e-10 70.5 88 38.6
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 2.2e-08 64.7 61 41.0
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 7.1e-07 59.7 239 24.3
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 9.3e-07 59.3 239 24.3
Dinv07569 Davidia involucrata HOM05D032653 ORTHO05D005678 2.1e-06 58.2 127 32.3


User provided reference genes

Program Settings