Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 2245.3 1125 100.0
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 2181.0 1125 97.5
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 2171.7 1125 97.2
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 2163.3 1125 96.7
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 2140.5 1125 95.8
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1983.4 1123 88.2
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1741.1 1122 77.9
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1704.5 1120 76.3
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1664.4 1120 74.8
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1524.6 1128 68.4
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1506.9 1132 67.2
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1496.1 1121 67.8
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1491.9 1125 67.0
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1488.0 1129 65.6
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1473.0 1132 66.7
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1469.5 1121 66.6
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1446.0 1127 64.5
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1441.8 1123 65.5
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1434.5 1125 64.9
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1429.8 1126 63.9
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1426.8 1126 64.3
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1422.9 1142 64.1
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1422.9 1139 63.7
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1417.9 1128 64.0
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1414.8 1127 63.4
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1412.9 1126 63.4
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1411.4 1121 63.5
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1399.0 1120 63.8
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1399.0 1196 60.0
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1397.5 1133 64.6
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1394.0 1186 61.6
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1378.6 1128 63.9
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1376.7 1128 63.8
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1373.2 1122 63.6
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1360.5 1079 66.3
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1355.5 1128 62.1
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1353.2 1153 60.8
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1352.0 1158 60.9
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1349.0 1128 60.7
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1345.5 1128 60.6
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1344.7 1124 61.4
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1342.0 1122 61.1
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1340.5 1129 61.0
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1340.5 1124 61.7
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1335.9 1142 59.9
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1333.5 1133 60.3
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1332.0 1172 60.5
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1325.5 1125 60.3
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1323.1 1120 60.6
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1321.6 1121 59.4
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1321.2 1126 59.4
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1318.1 1122 59.4
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1313.5 1131 60.5
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1313.1 1122 59.4
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1312.0 1125 60.2
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1304.3 1125 60.2
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1294.6 1142 60.4
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1293.9 1113 61.0
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1292.7 1124 60.5
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1289.2 1113 60.8
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1288.1 960 68.4
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1282.3 1122 60.3
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1281.5 1113 60.6
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1279.2 1120 58.8
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1279.2 1127 58.7
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1277.3 1121 59.0
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1276.5 1129 58.3
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1276.2 1130 58.7
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1276.2 1120 57.8
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1275.4 1125 58.9
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1271.5 1121 58.6
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1268.1 1130 58.5
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1268.1 1130 58.5
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1266.9 1116 58.4
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1266.5 1123 59.1
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1265.4 1180 55.4
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1264.6 1122 58.4
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1263.8 1121 58.7
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1262.3 1123 58.5
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1261.1 1123 57.4
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1260.4 1026 62.6
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1260.4 966 65.6
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1259.6 937 67.9
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1258.8 1119 57.8
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1257.3 1121 58.1
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1256.1 1123 58.2
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1245.7 1136 57.0
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1244.6 1210 54.9
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1243.8 1125 57.7
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1239.6 1143 57.0
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1239.6 1126 57.5
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1229.9 1133 56.3
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1228.8 1121 57.2
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1217.2 1010 63.8
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1208.7 1107 56.5
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1201.4 969 63.4
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1197.2 1193 54.1
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1166.0 1012 59.8
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1159.1 1170 53.8
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1151.7 1116 53.9
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1150.2 967 63.2
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1146.0 839 67.1
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1114.8 793 69.9
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1113.6 1137 52.5
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.3e-306 1056.6 908 58.3
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.1e-305 1053.5 1096 53.3
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 4.0e-295 1018.5 1164 47.9
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.5e-289 1000.0 732 66.5
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 2.7e-283 979.2 810 61.6
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.5e-270 936.8 1040 50.5
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.4e-263 912.9 646 69.2
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.4e-258 897.1 1137 43.9
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 2.7e-251 872.8 1016 47.8
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.6e-249 866.3 1157 43.0
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 2.0e-238 830.1 1113 42.8
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 4.9e-232 808.9 825 52.8
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.1e-194 683.3 988 40.4
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 3.6e-166 590.1 1115 36.1
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 3.9e-157 560.1 411 68.6
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 3.5e-153 547.0 463 60.3
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 9.1e-146 522.3 1136 33.9
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 8.0e-142 509.2 537 52.7
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.8e-116 423.3 331 61.3
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 4.0e-101 374.0 1279 27.1
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 1.7e-99 368.6 297 61.6
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.3e-79 300.8 234 65.0
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 7.4e-79 300.1 529 36.7
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 7.4e-71 273.5 377 43.2
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 3.9e-64 251.1 230 53.9
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.9e-64 251.1 247 54.7
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.7e-64 250.4 234 55.6
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.9e-63 248.8 381 40.4
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.3e-56 225.3 234 51.7
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.5e-55 222.6 248 49.6
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 1.7e-51 209.1 211 53.1
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 7.7e-44 183.7 399 34.1
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 7.2e-42 177.2 258 42.2
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.7e-41 174.5 223 43.5
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.1e-41 174.1 223 43.5
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.1e-41 174.1 223 43.5
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.1e-41 174.1 223 43.5
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.3e-40 172.2 223 43.0
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 9.4e-34 150.2 248 40.3
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 9.4e-34 150.2 248 40.3
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-31 142.9 223 39.0
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 2.6e-31 142.1 248 39.1
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.6e-31 142.1 143 51.0
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.6e-28 132.9 390 29.0
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.5e-26 124.4 241 34.9
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.1e-21 108.6 81 61.7
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 3.1e-21 108.6 130 47.7
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 1.0e-19 103.6 299 27.1
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.5e-18 99.0 103 51.5
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 4.7e-17 94.7 56 73.2
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 4.7e-17 94.7 77 59.7
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 7.0e-13 80.9 55 67.3
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.6e-09 69.7 70 50.0
RcHm_v2.0_Chr5g0058211 Rosa chinensis HOM05D004846 ORTHO05D005630 1.3e-06 60.1 36 86.1


User provided reference genes

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