Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.1e-97 359.8 163 100.0
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 1.9e-89 332.4 154 98.1
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.9e-89 332.4 154 98.1
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 5.6e-89 330.9 154 97.4
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.6e-88 329.3 154 98.1
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 2.7e-83 312.0 154 92.2
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.3e-74 283.1 154 79.9
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.3e-74 283.1 154 79.9
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 1.3e-74 283.1 154 79.9
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 1.1e-73 280.0 154 77.3
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 1.9e-73 279.3 154 79.9
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 1.9e-73 279.3 154 76.6
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 2.5e-73 278.9 154 78.6
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 2.5e-73 278.9 154 79.2
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 3.3e-73 278.5 154 77.9
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 7.4e-73 277.3 154 79.2
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 6.3e-72 274.2 154 76.6
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 3.1e-71 271.9 154 77.3
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 5.3e-71 271.2 154 76.6
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 6.9e-71 270.8 154 76.0
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 6.9e-71 270.8 149 79.9
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 1.2e-70 270.0 154 74.7
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 2.2e-69 265.8 154 71.4
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 2.9e-69 265.4 154 72.7
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 2.9e-69 265.4 154 74.0
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 3.8e-69 265.0 154 74.7
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 5.0e-69 264.6 154 74.7
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 5.0e-69 264.6 154 76.0
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.1e-68 263.5 154 72.1
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 1.9e-68 262.7 154 74.7
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 4.2e-68 261.5 154 70.1
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 5.5e-68 261.2 154 71.4
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 9.4e-68 260.4 154 70.8
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 1.2e-67 260.0 154 70.8
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 1.6e-67 259.6 155 74.2
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 2.7e-67 258.8 154 70.8
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 1.4e-66 256.5 154 71.4
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 1.4e-66 256.5 154 72.1
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 1.4e-66 256.5 154 72.7
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 3.0e-66 255.4 154 72.1
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 3.9e-66 255.0 154 71.4
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.0e-65 252.7 154 70.8
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 2.5e-65 252.3 154 70.8
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 2.5e-65 252.3 154 69.5
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 2.5e-65 252.3 154 72.1
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 9.7e-65 250.4 154 70.1
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.3e-64 250.0 154 69.5
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 1.7e-64 249.6 154 68.8
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 2.2e-64 249.2 154 68.8
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 1.1e-63 246.9 150 69.3
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 1.1e-63 246.9 154 68.2
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 1.4e-63 246.5 154 67.5
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.8e-63 246.1 154 69.5
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 4.1e-63 245.0 154 67.5
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 4.1e-63 245.0 152 69.1
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 5.3e-63 244.6 153 67.3
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 6.9e-63 244.2 154 67.5
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 1.2e-62 243.4 154 67.5
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 1.5e-62 243.0 154 66.9
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 2.6e-62 242.3 154 67.5
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 2.6e-62 242.3 154 66.2
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 3.4e-62 241.9 154 67.5
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 4.5e-62 241.5 154 68.2
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 5.9e-62 241.1 154 65.6
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 1.7e-61 239.6 153 67.3
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 6.5e-61 237.7 154 65.6
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 1.1e-60 236.9 154 66.9
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 1.9e-60 236.1 151 68.2
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 2.5e-60 235.7 153 66.0
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 2.5e-60 235.7 154 63.0
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 3.2e-60 235.3 154 66.9
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 1.6e-59 233.0 154 66.2
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 8.8e-58 227.3 149 67.1
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 8.8e-58 227.3 132 74.2
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 3.3e-57 225.3 154 62.3
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 4.4e-57 224.9 151 62.3
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 9.7e-57 223.8 151 62.3
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 9.7e-57 223.8 151 62.3
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 9.7e-57 223.8 151 62.3
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 9.7e-57 223.8 151 62.3
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 1.3e-56 223.4 151 62.3
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 1.3e-56 223.4 149 66.4
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 1.7e-56 223.0 154 67.5
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 3.7e-56 221.9 151 61.6
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 3.7e-56 221.9 153 60.8
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 6.3e-56 221.1 151 62.9
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 6.3e-56 221.1 151 61.6
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 6.3e-56 221.1 154 64.9
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 3.1e-55 218.8 151 60.3
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 3.1e-55 218.8 154 64.9
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 9.1e-55 217.2 154 60.4
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 9.1e-55 217.2 154 60.4
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 2.6e-54 215.7 150 61.3
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 5.9e-54 214.5 151 60.3
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 7.7e-54 214.2 155 64.5
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 1.0e-53 213.8 151 59.6
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 2.2e-53 212.6 150 59.3
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 6.1e-51 204.5 155 59.4
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 1.8e-50 203.0 111 80.2
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 2.3e-50 202.6 142 58.5
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 4.7e-43 178.3 155 53.5
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 1.8e-42 176.4 151 53.0
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 4.0e-42 175.3 154 49.4
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 5.2e-42 174.9 151 52.3
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 8.8e-42 174.1 142 54.2
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 7.5e-41 171.0 152 49.3
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 2.8e-40 169.1 151 49.0
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 1.1e-36 157.1 154 43.5
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 3.6e-35 152.1 159 47.2
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 1.8e-34 149.8 162 44.4
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 1.7e-32 143.3 156 41.7
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 2.8e-24 115.9 71 64.8
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 7.8e-22 107.8 54 81.5
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 1.6e-19 100.1 49 79.6
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 3.5e-14 82.4 45 75.6
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 1.0e-13 80.9 42 81.0
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 1.7e-13 80.1 55 63.6
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 5.8e-09 65.1 56 55.4
Mapoly0033s0071 Marchantia polymorpha HOM05D006599 ORTHO05D008304 9.8e-09 64.3 136 27.9
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 8.3e-08 61.2 106 34.9


User provided reference genes

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