Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1999 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.2e-146 523.1 260 100.0
FAN05G2800 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.2e-146 523.1 260 100.0
FAN02G1782 Fragaria x ananassa HOM05D006298 ORTHO05D008167 9.8e-144 513.5 260 98.1
FvH4_6g16470 Fragaria vesca HOM05D006298 ORTHO05D008167 7.3e-139 497.3 260 95.8
FAN14G4061 Fragaria x ananassa HOM05D006298 ORTHO05D008167 7.3e-139 497.3 260 95.8
FAN09G1272 Fragaria x ananassa HOM05D006298 ORTHO05D008167 2.0e-125 452.6 232 97.0
RcHm_v2.0_Chr3g0470361 Rosa chinensis HOM05D006298 ORTHO05D008167 4.1e-118 428.3 235 92.8
Prupe.7G128900 Prunus persica HOM05D006298 ORTHO05D008167 9.6e-107 390.6 241 84.2
MD04G1092500 Malus domestica HOM05D006298 ORTHO05D008167 6.0e-101 371.3 243 81.1
Cfa017623 Carpinus fangiana HOM05D006298 ORTHO05D008167 4.3e-91 338.6 265 71.3
PGR142G1273 Punica granatum HOM05D006298 ORTHO05D008167 4.3e-91 338.6 243 74.9
QL07p043135 Quercus lobata HOM05D006298 ORTHO05D008167 8.1e-90 334.3 238 74.4
ClCG10G020070 Citrullus lanatus HOM05D006298 ORTHO05D008167 6.9e-89 331.3 244 73.4
TAR623G0635 Trochodendron aralioides HOM05D006298 ORTHO05D008167 1.3e-87 327.0 246 71.1
GSVIVG01033647001 Vitis vinifera HOM05D006298 ORTHO05D008167 1.3e-87 327.0 239 72.4
Sabra16G0098900 Salix brachista HOM05D006298 ORTHO05D008167 3.8e-87 325.5 241 73.4
Phvul.007G147500 Phaseolus vulgaris HOM05D006298 ORTHO05D008167 6.4e-87 324.7 238 73.5
COL.COLO4_26951 Corchorus olitorius HOM05D006298 ORTHO05D008167 1.1e-86 323.9 242 73.6
VMungo0720G2332 Vigna mungo HOM05D006298 ORTHO05D008167 1.1e-86 323.9 238 72.3
Haze_20529 Corylus avellana HOM05D006298 ORTHO05D008167 2.4e-86 322.8 261 69.0
CiPaw.09G171800 Carya illinoinensis HOM05D006298 ORTHO05D008167 4.2e-86 322.0 241 74.3
Eucgr.K02926 Eucalyptus grandis HOM05D006298 ORTHO05D008167 1.2e-85 320.5 247 71.7
Lj4g0025039 Lotus japonicus HOM05D006298 ORTHO05D008167 1.2e-85 320.5 244 71.3
Rhsim03G0091000 Rhododendron simsii HOM05D006298 ORTHO05D008167 2.7e-85 319.3 244 73.0
CsaV3_3G036020 Cucumis sativus L. HOM05D006298 ORTHO05D008167 3.5e-85 318.9 245 71.0
Gohir.D01G130400 Gossypium hirsutum HOM05D006298 ORTHO05D008167 3.5e-85 318.9 241 71.4
Gorai.002G161800 Gossypium raimondii HOM05D006298 ORTHO05D008167 3.5e-85 318.9 241 71.4
CSS0011355 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 4.6e-85 318.5 247 69.2
CSS0035285 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 4.6e-85 318.5 251 69.7
Oeu053684.1 Olea europaea HOM05D006298 ORTHO05D008167 6.0e-85 318.2 251 69.3
Potri.016G099300 Populus trichocarpa HOM05D006298 ORTHO05D008167 7.9e-85 317.8 241 72.6
Ca_11509_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 1.3e-84 317.0 240 71.2
Gohir.A01G141763 Gossypium hirsutum HOM05D006298 ORTHO05D008167 1.8e-84 316.6 242 72.3
Cpa.g.sc102.32 Carica papaya HOM05D006298 ORTHO05D008167 3.0e-84 315.8 239 72.8
Hma1.2p1_0205F.1_g086920 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 6.7e-84 314.7 239 69.9
Manes.08G011200 Manihot esculenta HOM05D006298 ORTHO05D008167 8.7e-84 314.3 247 69.2
Sed0010557 Sechium edule HOM05D006298 ORTHO05D008167 1.9e-83 313.2 238 73.5
Thecc.05G068100 Theobroma cacao HOM05D006298 ORTHO05D008167 1.9e-83 313.2 235 71.9
THA.LOC104807061 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 3.3e-83 312.4 235 69.8
Aqoxy1G01145 Aquilegia oxysepala HOM05D006298 ORTHO05D008167 2.1e-82 309.7 252 67.1
SGA_v2.0_scaffold40G15525 Striga asiatica HOM05D006298 ORTHO05D008167 2.8e-82 309.3 246 69.5
Actinidia08768 Actinidia chinensis HOM05D006298 ORTHO05D008167 8.2e-82 307.8 249 68.7
CANSAT80G2892 Cannabis sativa HOM05D006298 ORTHO05D008167 2.4e-81 306.2 236 70.3
TPR.G11270 Trifolium pratense HOM05D006298 ORTHO05D008167 4.0e-81 305.4 242 69.0
TWI53G1706 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 4.0e-81 305.4 279 64.2
DCAR_017674 Daucus carota HOM05D006298 ORTHO05D008167 5.3e-81 305.1 242 68.6
Cc06_g04290 Coffea canephora HOM05D006298 ORTHO05D008167 6.9e-81 304.7 269 63.6
Duzib106G2039 Durio zibethinus HOM05D006298 ORTHO05D008167 2.0e-80 303.1 234 70.9
Migut.J00651 Erythranthe guttata HOM05D006298 ORTHO05D008167 3.4e-80 302.4 244 66.8
Glyma.10G054900 Glycine max HOM05D006298 ORTHO05D008167 5.8e-80 301.6 236 66.9
Ciclev10012651m.g Citrus clementina HOM05D006298 ORTHO05D008167 1.0e-79 300.8 242 69.4
Glyma.13G142000 Glycine max HOM05D006298 ORTHO05D008167 1.0e-79 300.8 241 65.1
PSO339G0145 Papaver somniferum HOM05D006298 ORTHO05D008167 2.9e-79 299.3 246 66.3
Psat6g073640 Pisum sativum HOM05D006298 ORTHO05D008167 3.8e-79 298.9 187 77.5
Lj2A120T46 Lonicera japonica HOM05D006298 ORTHO05D008167 1.9e-78 296.6 247 67.2
HPP92_022584 Vanilla planifolia HOM05D006298 ORTHO05D008167 1.9e-78 296.6 240 65.4
THA.LOC104805233 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 2.5e-78 296.2 271 61.6
Lalb_Chr21g0315031 Lupinus albus HOM05D006298 ORTHO05D008167 9.3e-78 294.3 241 68.9
PSO063G5537 Papaver somniferum HOM05D006298 ORTHO05D008167 9.3e-78 294.3 247 66.0
TWI77G0409 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 1.6e-77 293.5 239 68.6
Aa31LG5G22130 Aethionema arabicum HOM05D006298 ORTHO05D008167 2.7e-77 292.7 246 64.2
Actinidia28907 Actinidia chinensis HOM05D006298 ORTHO05D008167 7.9e-77 291.2 289 59.9
Sp4g19190 Schrenkiella parvula HOM05D006298 ORTHO05D008167 1.3e-76 290.4 207 70.5
arahy.Tifrunner.gnm1.ann1.GSM08A Arachis hypogaea HOM05D006298 ORTHO05D008167 1.8e-76 290.0 244 66.4
arahy.Tifrunner.gnm1.ann1.UZM884 Arachis hypogaea HOM05D006298 ORTHO05D008167 1.8e-76 290.0 244 66.4
EL10Ac7g16640 Beta vulgaris HOM05D006298 ORTHO05D008167 1.1e-75 287.3 244 64.3
ATR0219G012 Amborella trichopoda HOM05D006298 ORTHO05D008167 3.3e-75 285.8 249 63.5
Thhalv10017183m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 7.4e-75 284.6 242 65.3
BcaB06g28958 Brassica carinata HOM05D006298 ORTHO05D008167 2.1e-74 283.1 233 66.1
Sc20g0005540 Simmondsia chinensis HOM05D006298 ORTHO05D008167 2.1e-74 283.1 248 61.7
vmacro07297 Vaccinium macrocarpon HOM05D006298 ORTHO05D008167 2.1e-74 283.1 198 74.2
A04p28210 Brassica napus HOM05D006298 ORTHO05D008167 8.2e-74 281.2 239 64.0
C04p65570 Brassica napus HOM05D006298 ORTHO05D008167 8.2e-74 281.2 239 64.0
Peaxi162Scf00311g01110 Petunia axillaris HOM05D006298 ORTHO05D008167 8.2e-74 281.2 240 64.2
CDE03G0133 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 1.4e-73 280.4 243 60.5
CDE04G2630 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 1.4e-73 280.4 242 60.7
Carub.0004s1875 Capsella rubella HOM05D006298 ORTHO05D008167 1.8e-73 280.0 242 62.8
HanXRQChr11g0350481 Helianthus annuus HOM05D006298 ORTHO05D008167 1.8e-73 280.0 272 57.0
Sopen10g033440 Solanum pennellii HOM05D006298 ORTHO05D008167 2.4e-73 279.6 250 60.4
PGSC0003DMG400028288 Solanum tuberosum HOM05D006298 ORTHO05D008167 2.4e-73 279.6 249 59.4
Nitab4.5_0000814g0050 Nicotiana tabacum HOM05D006298 ORTHO05D008167 3.1e-73 279.3 236 63.1
Nitab4.5_0000063g0130 Nicotiana tabacum HOM05D006298 ORTHO05D008167 4.1e-73 278.9 236 62.7
Solyc10g083990.2 Solanum lycopersicum HOM05D006298 ORTHO05D008167 4.1e-73 278.9 250 60.4
BraA04t18305Z Brassica rapa HOM05D006298 ORTHO05D008167 1.2e-72 277.3 239 63.6
Os03g0152600 Oryza sativa ssp. japonica HOM05D006298 ORTHO05D008167 1.5e-72 276.9 238 62.6
Lsat_1_v5_gn_1_51681 Lactuca sativa HOM05D006298 ORTHO05D008167 2.0e-72 276.6 239 64.9
BolC4t28046H Brassica oleracea HOM05D006298 ORTHO05D008167 3.4e-72 275.8 233 64.8
Atru.BG.206.p Acer truncatum HOM05D006298 ORTHO05D008167 4.5e-72 275.4 160 81.9
AUR62040336 Chenopodium quinoa HOM05D006298 ORTHO05D008167 1.7e-71 273.5 249 59.8
BcaC02g07571 Brassica carinata HOM05D006298 ORTHO05D008167 2.2e-71 273.1 233 64.4
AT2G36895 Arabidopsis thaliana HOM05D006298 ORTHO05D008167 8.5e-71 271.2 267 58.1
AUR62042070 Chenopodium quinoa HOM05D006298 ORTHO05D008167 4.2e-70 268.9 234 61.5
AUR62044331 Chenopodium quinoa HOM05D006298 ORTHO05D008167 4.2e-70 268.9 234 61.5
MBI18_g02636_MAGBIO Magnolia biondii HOM05D006298 ORTHO05D008167 9.3e-70 267.7 310 53.2
Ah.08g211590 Amaranthus hybridus HOM05D006298 ORTHO05D008167 7.4e-67 258.1 237 58.6
AL4G33120 Arabidopsis lyrata HOM05D006298 ORTHO05D008167 3.8e-63 245.7 236 58.5
Nn6g35281 Nelumbo nucifera HOM05D006298 ORTHO05D008167 5.0e-63 245.4 126 92.9
ECA248G3050 Erigeron canadensis HOM05D006298 ORTHO05D008167 1.2e-61 240.7 172 70.3
Duzib093G1320 Durio zibethinus HOM05D006298 ORTHO05D008167 9.7e-59 231.1 238 57.1
SMO119G0246 Selaginella moellendorffii HOM05D006298 ORTHO05D008167 8.2e-58 228.0 190 59.5
Mapoly0063s0087 Marchantia polymorpha HOM05D006298 ORTHO05D008167 5.3e-57 225.3 182 63.2
Pp3c6_17550 Physcomitrium patens HOM05D006298 ORTHO05D008167 1.0e-55 221.1 184 63.0
AUR62042510 Chenopodium quinoa HOM05D006298 ORTHO05D008167 2.9e-55 219.5 230 56.5
unitig_26.g9235 Utricularia gibba HOM05D006298 ORTHO05D008167 3.2e-54 216.1 126 80.2
Atru.chr8.1795 Acer truncatum HOM05D006298 ORTHO05D008167 1.2e-53 214.2 110 91.8
Dinv35789 Davidia involucrata HOM05D006298 ORTHO05D008167 2.6e-51 206.5 190 63.2
Medtr1g063100 Medicago truncatula HOM05D006298 ORTHO05D008167 6.3e-50 201.8 185 61.6
SEGI_37587 Sequoiadendron giganteum HOM05D006298 ORTHO05D008167 5.0e-47 192.2 131 71.0
Zm00001eb403160 Zea mays HOM05D006298 ORTHO05D008167 9.4e-46 188.0 176 58.5
BcaC02g07569 Brassica carinata HOM05D006298 ORTHO05D008167 2.7e-40 169.9 186 56.5
CARHR131360 Cardamine hirsuta HOM05D006298 ORTHO05D008167 3.2e-38 162.9 90 83.3
Hma1.2p1_0205F.1_g086930 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 5.2e-36 155.6 150 60.7
AagrBONN_evm.TU.Sc2ySwM_228.4347 Anthoceros agrestis HOM05D006298 ORTHO05D008167 3.8e-31 139.4 113 59.3
Cre11.g469100 Chlamydomonas reinhardtii HOM05D006298 ORTHO05D008167 2.3e-28 130.2 150 49.3
CBR_g45378 Chara braunii HOM05D006298 ORTHO05D008167 3.0e-28 129.8 91 68.1
Thhalv10000465m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 2.4e-25 120.2 96 66.7
Medtr6g035275 Medicago truncatula HOM05D006298 ORTHO05D008167 1.6e-21 107.5 54 94.4
MD12G1110600 Malus domestica HOM05D006298 ORTHO05D008167 8.0e-21 105.1 49 95.9
BcaB01g03809 Brassica carinata HOM05D006298 ORTHO05D008167 2.0e-16 90.5 91 49.5
BcaC04g19302 Brassica carinata HOM05D006298 ORTHO05D008167 7.8e-16 88.6 56 75.0
Ca_27221_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 1.2e-13 81.3 65 64.6
BcaC02g07570 Brassica carinata HOM05D006298 ORTHO05D008167 1.4e-12 77.8 38 84.2
Prupe.4G234300 Prunus persica HOM05D006298 ORTHO05D007008 4.6e-08 62.8 39 76.9
arahy.Tifrunner.gnm1.ann1.31G0Q2 Arachis hypogaea HOM05D006298 ORTHO05D082484 1.5e-06 57.8 34 76.5
Ca_27663_v3 Cicer arietinum L. HOM05D002033 ORTHO05D002181 2.5e-06 57.0 35 74.3


User provided reference genes

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