Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2755 Fragaria x ananassa HOM05D025868 ORTHO05D001711 5.4e-161 570.9 274 100.0
FvH4_6g30290 Fragaria vesca HOM05D025868 ORTHO05D001711 1.4e-145 519.6 272 93.4
FAN02G3540 Fragaria x ananassa HOM05D025868 ORTHO05D001711 1.3e-135 486.5 272 89.7
RcHm_v2.0_Chr2g0136531 Rosa chinensis HOM05D025868 ORTHO05D001711 6.3e-117 424.5 272 76.8
Prupe.3G080200 Prunus persica HOM05D001781 ORTHO05D001711 9.3e-36 154.8 289 37.0
MD17G1205200 Malus domestica HOM05D001781 ORTHO05D001711 1.8e-34 150.6 309 34.6
Prupe.3G080700 Prunus persica HOM05D001781 ORTHO05D001711 9.0e-31 138.3 293 32.4
MD17G1204700 Malus domestica HOM05D001781 ORTHO05D001711 2.7e-27 126.7 219 37.9
CSS0002175 Camellia sinensis var. sinensis HOM05D001781 ORTHO05D001711 5.0e-21 105.9 270 30.0
GSVIVG01017255001 Vitis vinifera HOM05D001781 ORTHO05D001711 1.9e-20 104.0 268 28.4
Actinidia15795 Actinidia chinensis HOM05D001781 ORTHO05D001711 6.1e-19 99.0 271 31.7
Manes.11G052900 Manihot esculenta HOM05D001781 ORTHO05D001711 2.3e-18 97.1 236 31.8
Nn2g11963 Nelumbo nucifera HOM05D001781 ORTHO05D001711 3.9e-18 96.3 307 26.7
TAR625G1385 Trochodendron aralioides HOM05D001781 ORTHO05D001711 6.7e-18 95.5 253 30.4
Potri.003G061600 Populus trichocarpa HOM05D001781 ORTHO05D001711 1.5e-17 94.4 307 30.0
Prupe.7G239500 Prunus persica HOM05D001781 ORTHO05D001711 1.5e-17 94.4 300 29.0
Nn8g39386 Nelumbo nucifera HOM05D001781 ORTHO05D001711 1.9e-17 94.0 292 29.5
Sc08g0006760 Simmondsia chinensis HOM05D001781 ORTHO05D001711 1.9e-17 94.0 300 28.3
TWI34G1451 Tripterygium wilfordii HOM05D001781 ORTHO05D001711 1.3e-16 91.3 312 27.2
MD02G1035700 Malus domestica HOM05D001781 ORTHO05D001711 2.2e-16 90.5 294 26.5
MD15G1175900 Malus domestica HOM05D001781 ORTHO05D001711 2.2e-16 90.5 309 26.9
Ciclev10008851m.g Citrus clementina HOM05D001781 ORTHO05D001711 3.7e-16 89.7 310 26.5
SHI22515 Sapria himalayana HOM05D001781 ORTHO05D001711 3.7e-16 89.7 292 27.7
Cfa003345 Carpinus fangiana HOM05D001781 ORTHO05D001711 6.3e-16 89.0 293 25.6
arahy.Tifrunner.gnm1.ann1.B60469 Arachis hypogaea HOM05D001781 ORTHO05D001711 1.1e-15 88.2 319 28.2
FAN26G1253 Fragaria x ananassa HOM05D001781 ORTHO05D001711 1.1e-15 88.2 293 25.6
Sc18g0000720 Simmondsia chinensis HOM05D001781 ORTHO05D001711 1.1e-15 88.2 286 28.0
Duzib168G2385 Durio zibethinus HOM05D001781 ORTHO05D001711 1.4e-15 87.8 310 25.2
arahy.Tifrunner.gnm1.ann1.JJB9SI Arachis hypogaea HOM05D001781 ORTHO05D001711 1.8e-15 87.4 319 28.2
COL.COLO4_05760 Corchorus olitorius HOM05D001781 ORTHO05D001711 2.4e-15 87.0 316 26.3
Prupe.3G083300 Prunus persica HOM05D001781 ORTHO05D001711 2.4e-15 87.0 121 42.1
Thecc.09G122900 Theobroma cacao HOM05D001781 ORTHO05D001711 2.4e-15 87.0 319 24.8
PSO170G3589 Papaver somniferum HOM05D001781 ORTHO05D001711 3.1e-15 86.7 249 31.7
Rhsim08G0216100 Rhododendron simsii HOM05D001781 ORTHO05D001711 3.1e-15 86.7 271 26.9
Duzib187G1560 Durio zibethinus HOM05D001781 ORTHO05D001711 6.9e-15 85.5 316 24.7
Atru.chr7.1195 Acer truncatum HOM05D001781 ORTHO05D001711 9.1e-15 85.1 312 26.3
Psat4g041760 Pisum sativum HOM05D001781 ORTHO05D001711 9.1e-15 85.1 288 28.1
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.2e-14 84.7 295 24.7
Lj4g0027268 Lotus japonicus HOM05D001781 ORTHO05D001711 1.2e-14 84.7 305 27.2
Manes.14G130400 Manihot esculenta HOM05D001781 ORTHO05D001711 1.2e-14 84.7 310 27.1
Potri.009G130600 Populus trichocarpa HOM05D001781 ORTHO05D001711 1.2e-14 84.7 304 26.0
Psat0s4391g0080 Pisum sativum HOM05D001781 ORTHO05D001711 2.0e-14 84.0 270 27.8
FvH4_1g03610 Fragaria vesca HOM05D001781 ORTHO05D001711 2.6e-14 83.6 293 24.9
FAN19G3215 Fragaria x ananassa HOM05D001781 ORTHO05D001711 2.6e-14 83.6 293 24.9
TWI63G0260 Tripterygium wilfordii HOM05D001781 ORTHO05D001711 2.6e-14 83.6 305 26.2
Aqoxy7G02095 Aquilegia oxysepala HOM05D001781 ORTHO05D001711 4.5e-14 82.8 284 30.6
Ca_21697_v3 Cicer arietinum L. HOM05D001781 ORTHO05D001711 4.5e-14 82.8 287 26.1
Glyma.17G116700 Glycine max HOM05D001781 ORTHO05D001711 4.5e-14 82.8 263 28.9
Gorai.001G040700 Gossypium raimondii HOM05D001781 ORTHO05D001711 5.9e-14 82.4 299 24.7
PSO455G0032 Papaver somniferum HOM05D001781 ORTHO05D001711 5.9e-14 82.4 249 30.9
Phvul.003G162600 Phaseolus vulgaris HOM05D001781 ORTHO05D001711 5.9e-14 82.4 312 25.6
Sabra03G0035700 Salix brachista HOM05D001781 ORTHO05D001711 5.9e-14 82.4 311 28.6
CiPaw.03G241600 Carya illinoinensis HOM05D001781 ORTHO05D001711 1.0e-13 81.6 289 26.3
Gohir.D07G038700 Gossypium hirsutum HOM05D001781 ORTHO05D001711 1.0e-13 81.6 264 25.8
QL02p087754 Quercus lobata HOM05D001781 ORTHO05D001711 1.0e-13 81.6 295 25.8
Sabra09G0101100 Salix brachista HOM05D001781 ORTHO05D001711 1.0e-13 81.6 301 24.6
Actinidia40455 Actinidia chinensis HOM05D001781 ORTHO05D001711 2.2e-13 80.5 250 30.0
RcHm_v2.0_Chr2g0089141 Rosa chinensis HOM05D001781 ORTHO05D001711 2.2e-13 80.5 294 24.8
MSTRG.26142 Avicennia marina HOM05D001781 ORTHO05D001711 2.9e-13 80.1 304 24.7
Glyma.05G008400 Glycine max HOM05D001781 ORTHO05D001711 2.9e-13 80.1 263 26.2
Hund21486 Selenicereus undatus HOM05D001781 ORTHO05D001711 2.9e-13 80.1 306 26.5
Lalb_Chr12g0197811 Lupinus albus HOM05D001781 ORTHO05D001711 5.0e-13 79.3 265 27.5
MBI06_g09277_MAGBIO Magnolia biondii HOM05D001781 ORTHO05D001711 5.0e-13 79.3 249 26.9
Sed0027740 Sechium edule HOM05D001781 ORTHO05D001711 6.5e-13 79.0 271 25.5
Haze_25615 Corylus avellana HOM05D001781 ORTHO05D001711 1.4e-12 77.8 249 26.9
Eucgr.C04180 Eucalyptus grandis HOM05D001781 ORTHO05D001711 1.4e-12 77.8 309 25.2
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.4e-12 77.8 292 25.3
Gohir.A07G034784 Gossypium hirsutum HOM05D001781 ORTHO05D001711 1.4e-12 77.8 296 24.7
Medtr4g113940 Medicago truncatula HOM05D001781 ORTHO05D001711 1.9e-12 77.4 237 28.7
Sed0007229 Sechium edule HOM05D001781 ORTHO05D001711 1.9e-12 77.4 253 26.5
THA.LOC104826540 Tarenaya hassleriana HOM05D001781 ORTHO05D001711 1.9e-12 77.4 292 24.3
VMungo1215G1152 Vigna mungo HOM05D001781 ORTHO05D001711 1.9e-12 77.4 261 27.2
Psat0s4095g0040 Pisum sativum HOM05D001781 ORTHO05D001711 2.5e-12 77.0 122 35.2
TAR636G2048 Trochodendron aralioides HOM05D001781 ORTHO05D001711 2.5e-12 77.0 249 26.9
Lalb_Chr07g0178791 Lupinus albus HOM05D001781 ORTHO05D001711 3.2e-12 76.6 269 26.8
SalBow1G3291 Salvia bowleyana HOM05D001781 ORTHO05D001711 3.2e-12 76.6 245 26.9
CANSAT11G0594 Cannabis sativa HOM05D001781 ORTHO05D001711 4.2e-12 76.3 255 25.9
Thhalv10020894m.g Eutrema salsugineum HOM05D001781 ORTHO05D001711 5.5e-12 75.9 279 25.1
Medtr4g113860 Medicago truncatula HOM05D001781 ORTHO05D001711 5.5e-12 75.9 282 26.6
Peaxi162Scf00591g00511 Petunia axillaris HOM05D001781 ORTHO05D001711 5.5e-12 75.9 305 24.9
Psat4g040320 Pisum sativum HOM05D001781 ORTHO05D001711 5.5e-12 75.9 129 33.3
Psat0s4391g0160 Pisum sativum HOM05D001781 ORTHO05D001711 7.2e-12 75.5 282 25.5
Psat4g041560 Pisum sativum HOM05D001781 ORTHO05D001711 9.4e-12 75.1 277 26.0
PGR044G0682 Punica granatum HOM05D001781 ORTHO05D001711 9.4e-12 75.1 311 24.4
Medtr3g050390 Medicago truncatula HOM05D001781 ORTHO05D001711 1.6e-11 74.3 248 27.8
Potri.004G169500 Populus trichocarpa HOM05D001781 ORTHO05D001711 1.6e-11 74.3 160 30.0
THA.LOC104809002 Tarenaya hassleriana HOM05D001781 ORTHO05D001711 1.6e-11 74.3 288 24.0
Actinidia22004 Actinidia chinensis HOM05D001781 ORTHO05D001711 2.1e-11 73.9 248 29.0
ClCG11G002860 Citrullus lanatus HOM05D001781 ORTHO05D001711 2.7e-11 73.6 267 24.3
Solyc11g070070.3 Solanum lycopersicum HOM05D001781 ORTHO05D001711 2.7e-11 73.6 301 24.9
CsaV3_2G002700 Cucumis sativus L. HOM05D001781 ORTHO05D001711 4.7e-11 72.8 254 24.8
PGSC0003DMG400046840 Solanum tuberosum HOM05D001781 ORTHO05D001711 4.7e-11 72.8 132 35.6
BraA03t13274Z Brassica rapa HOM05D001781 ORTHO05D001711 6.1e-11 72.4 285 25.3
AUR62011086 Chenopodium quinoa HOM05D001781 ORTHO05D001711 6.1e-11 72.4 308 25.0
PSO210G1936 Papaver somniferum HOM05D001781 ORTHO05D001711 6.1e-11 72.4 234 26.5
Sabra04G0113600 Salix brachista HOM05D001781 ORTHO05D001711 6.1e-11 72.4 161 30.4
PGSC0003DMG400025515 Solanum tuberosum HOM05D001781 ORTHO05D001711 6.1e-11 72.4 291 25.1
A03p41210 Brassica napus HOM05D001781 ORTHO05D001711 7.9e-11 72.0 285 25.3
Cc06_g08800 Coffea canephora HOM05D001781 ORTHO05D001711 7.9e-11 72.0 255 26.3
Nitab4.5_0005411g0020 Nicotiana tabacum HOM05D001781 ORTHO05D001711 1.0e-10 71.6 264 26.1
ATR1156G002 Amborella trichopoda HOM05D001781 ORTHO05D001711 1.4e-10 71.2 270 27.4
Cpa.g.c41482 Carica papaya HOM05D001781 ORTHO05D001711 1.4e-10 71.2 97 38.1
Cpa.g.sc75.57 Carica papaya HOM05D001781 ORTHO05D001711 1.4e-10 71.2 97 38.1
A01p35290 Brassica napus HOM05D001781 ORTHO05D001711 1.8e-10 70.9 321 23.4
Sopen11g028750 Solanum pennellii HOM05D001781 ORTHO05D001711 2.3e-10 70.5 291 24.7
Oeu063806.2 Olea europaea HOM05D001781 ORTHO05D001711 3.0e-10 70.1 281 25.3
BcaB04g20709 Brassica carinata HOM05D001781 ORTHO05D001711 3.9e-10 69.7 332 22.6
Carub.0003s1918 Capsella rubella HOM05D001781 ORTHO05D001711 3.9e-10 69.7 276 24.6
C01p44780 Brassica napus HOM05D001781 ORTHO05D001711 5.1e-10 69.3 282 23.4
vmacro18965 Vaccinium macrocarpon HOM05D001781 ORTHO05D001711 5.1e-10 69.3 297 25.3
BcaC01g03632 Brassica carinata HOM05D001781 ORTHO05D001711 6.7e-10 68.9 319 24.1
BcaC09g48886 Brassica carinata HOM05D001781 ORTHO05D001711 6.7e-10 68.9 286 23.4
BolC1t04444H Brassica oleracea HOM05D001781 ORTHO05D001711 6.7e-10 68.9 286 23.4
Rhsim01G0076800 Rhododendron simsii HOM05D001781 ORTHO05D001711 6.7e-10 68.9 240 27.5
EL10Ac5g12613 Beta vulgaris HOM05D001781 ORTHO05D001711 8.8e-10 68.6 329 27.1
Nitab4.5_0006574g0060 Nicotiana tabacum HOM05D001781 ORTHO05D001711 8.8e-10 68.6 263 27.8
CSS0022836 Camellia sinensis var. sinensis HOM05D001781 ORTHO05D001711 1.1e-09 68.2 309 26.5
CSS0038934 Camellia sinensis var. sinensis HOM05D001781 ORTHO05D001711 1.1e-09 68.2 309 26.5
Hma1.2p1_0665F.1_g199160 Hydrangea macrophylla HOM05D001781 ORTHO05D001711 1.1e-09 68.2 253 25.7
AT3G19360 Arabidopsis thaliana HOM05D001781 ORTHO05D001711 1.5e-09 67.8 275 23.6
BraA01t03610Z Brassica rapa HOM05D001781 ORTHO05D001711 1.5e-09 67.8 323 22.6
CAN.G309.58 Capsicum annuum HOM05D001781 ORTHO05D001711 1.5e-09 67.8 263 24.3
Lalb_Chr13g0301961 Lupinus albus HOM05D001781 ORTHO05D001711 1.5e-09 67.8 123 33.3
PGSC0003DMG400043849 Solanum tuberosum HOM05D001781 ORTHO05D001711 1.5e-09 67.8 132 34.1
Lj4A461T9 Lonicera japonica HOM05D001781 ORTHO05D001711 2.0e-09 67.4 256 25.8
Oeu006925.1 Olea europaea HOM05D001781 ORTHO05D001711 2.0e-09 67.4 97 37.1
AL3G32760 Arabidopsis lyrata HOM05D001781 ORTHO05D001711 2.6e-09 67.0 281 22.4
AUR62033468 Chenopodium quinoa HOM05D001781 ORTHO05D001711 2.6e-09 67.0 288 26.0
Nitab4.5_0002257g0050 Nicotiana tabacum HOM05D001781 ORTHO05D001711 2.6e-09 67.0 263 26.6
Nitab4.5_0004188g0030 Nicotiana tabacum HOM05D001781 ORTHO05D001711 2.6e-09 67.0 259 25.1
Oeu006941.1 Olea europaea HOM05D001781 ORTHO05D001711 2.6e-09 67.0 87 39.1
Migut.I00800 Erythranthe guttata HOM05D001781 ORTHO05D001711 3.3e-09 66.6 254 22.8
MELO3C004524.2 Cucumis melo HOM05D001781 ORTHO05D001711 4.4e-09 66.2 263 24.3
Lsat_1_v5_gn_8_57420 Lactuca sativa HOM05D001781 ORTHO05D001711 4.4e-09 66.2 114 33.3
Dinv36549 Davidia involucrata HOM05D001781 ORTHO05D001711 5.7e-09 65.9 136 30.1
Ah.14g080640 Amaranthus hybridus HOM05D001781 ORTHO05D001711 9.7e-09 65.1 89 38.2
CDE12G0322 Ceratophyllum demersum HOM05D001781 ORTHO05D001711 9.7e-09 65.1 122 32.8
HanXRQChr16g0500551 Helianthus annuus HOM05D001781 ORTHO05D001711 9.7e-09 65.1 83 38.6
Hma1.2p1_0018F.1_g012670 Hydrangea macrophylla HOM05D001781 ORTHO05D001711 9.7e-09 65.1 100 37.0
Medtr4g113890 Medicago truncatula HOM05D001781 ORTHO05D001711 9.7e-09 65.1 81 39.5
Thecc.06G072200 Theobroma cacao HOM05D001781 ORTHO05D001711 9.7e-09 65.1 179 30.2
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 9.7e-09 65.1 120 35.8
Lsat_1_v5_gn_8_58860 Lactuca sativa HOM05D001781 ORTHO05D001711 1.3e-08 64.7 91 36.3
Lj8A304T44 Lonicera japonica HOM05D001781 ORTHO05D001711 2.2e-08 63.9 279 25.8
unitig_899.g15345 Utricularia gibba HOM05D005016 ORTHO05D005740 2.8e-08 63.5 264 25.4
vmacro20596 Vaccinium macrocarpon HOM05D001781 ORTHO05D001711 2.8e-08 63.5 230 24.8
Aa31LG8G6110 Aethionema arabicum HOM05D001781 ORTHO05D001711 3.7e-08 63.2 277 23.8
Sopen12g016540 Solanum pennellii HOM05D001781 ORTHO05D001711 6.3e-08 62.4 97 33.0
Sp3g17420 Schrenkiella parvula HOM05D001781 ORTHO05D001711 1.1e-07 61.6 280 23.6
Atru.chr6.2116 Acer truncatum HOM05D001781 ORTHO05D001711 1.4e-07 61.2 187 29.9
Oeu003481.1 Olea europaea HOM05D001781 ORTHO05D001711 1.8e-07 60.8 132 28.8
HPP92_008653 Vanilla planifolia HOM05D001781 ORTHO05D001711 2.4e-07 60.5 110 31.8
BolC4t22943H Brassica oleracea HOM05D001781 ORTHO05D001711 3.1e-07 60.1 133 31.6
CDE04G2249 Ceratophyllum demersum HOM05D001781 ORTHO05D001711 3.1e-07 60.1 247 26.3
Prupe.5G033000 Prunus persica HOM05D001781 ORTHO05D001711 3.1e-07 60.1 148 31.1
CDE12G0912 Ceratophyllum demersum HOM05D001781 ORTHO05D001711 4.1e-07 59.7 144 31.2
HanXRQChr06g0180231 Helianthus annuus HOM05D001781 ORTHO05D001711 4.1e-07 59.7 277 26.0
PGSC0003DMG400043565 Solanum tuberosum HOM05D001781 ORTHO05D001711 4.1e-07 59.7 97 34.0
C04p12750 Brassica napus HOM05D001781 ORTHO05D001711 5.3e-07 59.3 114 34.2
Migut.K00116 Erythranthe guttata HOM05D001781 ORTHO05D001711 5.3e-07 59.3 290 22.1
Oeu006936.1 Olea europaea HOM05D001781 ORTHO05D001711 5.3e-07 59.3 87 36.8
Lsat_1_v5_gn_4_105901 Lactuca sativa HOM05D001781 ORTHO05D001711 6.9e-07 58.9 158 25.9
Medtr4g113970 Medicago truncatula HOM05D001781 ORTHO05D001711 6.9e-07 58.9 137 31.4
AUR62028204 Chenopodium quinoa HOM05D001781 ORTHO05D001711 9.1e-07 58.5 276 24.6
AUR62002086 Chenopodium quinoa HOM05D001781 ORTHO05D001711 1.2e-06 58.2 275 24.4
ECA248G3267 Erigeron canadensis HOM05D001781 ORTHO05D001711 1.2e-06 58.2 243 28.0
Lalb_Chr24g0395591 Lupinus albus HOM05D014786 ORTHO05D016942 1.2e-06 58.2 80 36.2
BcaB02g09431 Brassica carinata HOM05D001781 ORTHO05D001711 1.5e-06 57.8 267 25.1
C03p50300 Brassica napus HOM05D001781 ORTHO05D001711 1.5e-06 57.8 187 27.3
BolC3t17324H Brassica oleracea HOM05D001781 ORTHO05D001711 1.5e-06 57.8 268 25.0
CARHR094760 Cardamine hirsuta HOM05D001781 ORTHO05D001711 1.5e-06 57.8 210 25.7
Psat5g301040 Pisum sativum HOM05D014786 ORTHO05D016942 1.5e-06 57.8 246 26.0
VMungo1080G1077 Vigna mungo HOM05D014786 ORTHO05D016942 1.5e-06 57.8 219 26.0
BcaC02g11648 Brassica carinata HOM05D001781 ORTHO05D001711 2.0e-06 57.4 267 25.1
MD00G1136200 Malus domestica HOM05D000300 ORTHO05D000383 2.0e-06 57.4 73 42.5
Pp3c1_20290 Physcomitrium patens HOM05D001781 ORTHO05D001711 2.0e-06 57.4 257 23.3
SMO118G0114 Selaginella moellendorffii HOM05D001781 ORTHO05D001711 2.0e-06 57.4 82 37.8
Sc13g0010950 Simmondsia chinensis HOM05D001781 ORTHO05D001711 3.4e-06 56.6 152 27.6
SGA_v2.0_scaffold273G46405 Striga asiatica HOM05D001781 ORTHO05D001711 3.4e-06 56.6 96 34.4
TPR.G37276 Trifolium pratense HOM05D014786 ORTHO05D016942 3.4e-06 56.6 126 30.2
BcaB04g19039 Brassica carinata HOM05D001781 ORTHO05D001711 4.5e-06 56.2 131 29.8
Solyc06g072720.3 Solanum lycopersicum HOM05D001781 ORTHO05D001711 4.5e-06 56.2 137 27.7
Sopen06g029090 Solanum pennellii HOM05D001781 ORTHO05D001711 4.5e-06 56.2 137 27.7
PGSC0003DMG400026937 Solanum tuberosum HOM05D001781 ORTHO05D001711 4.5e-06 56.2 137 27.7
Hund09807 Selenicereus undatus HOM05D001781 ORTHO05D001711 5.9e-06 55.8 150 26.7
Zm00001eb336830 Zea mays HOM05D001781 ORTHO05D001711 5.9e-06 55.8 92 35.9
Phvul.005G175200 Phaseolus vulgaris HOM05D014786 ORTHO05D016942 7.7e-06 55.5 216 25.0
PGSC0003DMG400005394 Solanum tuberosum HOM05D001781 ORTHO05D001711 7.7e-06 55.5 106 30.2


User provided reference genes

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