Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 5.9e-294 1013.4 510 100.0
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.6e-238 827.8 510 85.3
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.3e-232 809.7 546 79.5
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 1.6e-230 802.7 487 86.9
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 5.1e-221 771.2 546 76.9
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 5.8e-217 757.7 487 82.1
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 1.9e-167 593.2 478 64.6
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 2.3e-165 586.3 480 63.3
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 2.2e-163 579.7 483 62.7
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 9.5e-159 564.3 504 60.5
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 2.8e-158 562.8 477 62.5
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 6.8e-157 558.1 473 61.5
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 8.9e-157 557.8 473 61.5
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 1.2e-156 557.4 479 61.4
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 1.5e-156 557.0 473 61.5
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.4e-154 550.4 479 60.3
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 3.2e-154 549.3 479 59.7
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 2.0e-153 546.6 470 61.1
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 4.6e-153 545.4 418 66.5
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 7.8e-153 544.7 429 66.0
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 7.8e-153 544.7 471 59.7
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 1.1e-151 540.8 494 59.9
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 1.9e-151 540.0 429 64.6
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.5e-151 539.7 479 59.9
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 2.5e-151 539.7 472 59.3
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 2.5e-151 539.7 474 60.5
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 3.3e-151 539.3 481 59.3
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 1.6e-150 537.0 446 62.8
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 2.1e-150 536.6 479 61.6
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 2.1e-150 536.6 479 59.9
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 3.6e-150 535.8 478 58.8
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 6.2e-150 535.0 473 60.0
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 1.1e-149 534.3 432 64.1
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 1.1e-149 534.3 512 56.1
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 3.1e-149 532.7 423 63.6
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 6.8e-149 531.6 454 62.1
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.2e-148 530.8 436 62.4
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 1.3e-147 527.3 418 63.9
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 3.7e-147 525.8 426 62.4
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 8.3e-147 524.6 439 61.5
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 1.4e-146 523.9 414 65.7
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 2.4e-146 523.1 426 62.0
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 6.0e-145 518.5 450 59.3
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 1.0e-144 517.7 418 62.9
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 5.0e-144 515.4 496 56.2
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 8.6e-144 514.6 476 59.2
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 5.6e-143 511.9 435 62.8
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 1.8e-141 506.9 441 59.6
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 1.2e-140 504.2 418 62.0
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 2.0e-140 503.4 449 59.7
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 9.9e-140 501.1 487 56.9
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 9.9e-140 501.1 412 61.7
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 1.3e-139 500.7 442 57.9
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 2.2e-139 500.0 405 63.2
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 3.7e-139 499.2 444 58.6
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 1.4e-138 497.3 370 72.7
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 1.9e-138 496.9 450 58.0
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 9.2e-138 494.6 425 59.3
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 4.6e-137 492.3 426 58.2
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 7.8e-137 491.5 445 58.9
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 2.3e-136 490.0 464 58.4
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 3.0e-136 489.6 526 52.7
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 8.6e-136 488.0 402 60.9
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 4.3e-135 485.7 456 55.7
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 9.5e-135 484.6 487 55.0
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 2.1e-134 483.4 453 56.1
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 2.8e-134 483.0 485 54.6
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.1e-133 481.1 466 54.3
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 1.8e-133 480.3 493 53.8
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 2.4e-133 479.9 459 56.2
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 4.0e-133 479.2 464 56.5
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 1.2e-132 477.6 484 52.7
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 2.0e-132 476.9 433 55.4
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 4.4e-132 475.7 477 56.4
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 1.7e-131 473.8 512 52.1
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 8.4e-131 471.5 442 56.8
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 1.3e-128 464.2 463 55.1
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 1.7e-128 463.8 449 56.3
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 1.2e-126 457.6 435 57.9
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 5.2e-125 452.2 419 54.9
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 9.9e-124 448.0 461 53.4
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 3.8e-123 446.0 466 53.2
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 7.1e-122 441.8 568 46.7
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 2.7e-121 439.9 379 60.4
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 3.0e-120 436.4 408 57.4
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.4e-117 426.8 348 64.1
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 1.2e-116 424.5 348 63.8
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 3.2e-114 416.4 404 54.2
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 2.8e-110 403.3 418 49.0
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 6.9e-109 398.7 467 48.2
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 7.9e-105 385.2 425 47.3
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 2.3e-104 383.6 441 49.9
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 2.0e-100 370.5 412 47.3
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 7.6e-100 368.6 412 49.5
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 3.8e-99 366.3 267 69.7
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 6.5e-99 365.5 285 67.4
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 1.6e-97 360.9 462 47.6
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 4.6e-97 359.4 324 58.3
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 6.0e-97 359.0 308 60.1
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 5.5e-90 335.9 467 39.8
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 9.1e-85 318.5 322 55.9
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 8.5e-75 285.4 240 61.2
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 7.2e-74 282.3 462 38.5
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 7.7e-68 262.3 278 54.3
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 2.0e-63 247.7 180 66.7
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 5.5e-58 229.6 191 60.7
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 2.2e-54 217.6 312 41.0
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 1.8e-53 214.5 135 74.8
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 7.2e-50 202.6 133 72.2
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 2.7e-44 184.1 128 69.5
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 6.1e-41 172.9 138 58.0
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 1.2e-39 168.7 241 41.9
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 2.2e-38 164.5 121 63.6
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 3.2e-37 160.6 157 52.9
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 5.6e-34 149.8 264 39.0
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 2.8e-33 147.5 134 57.5
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 2.0e-31 141.4 87 65.5
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 1.4e-29 135.2 217 37.8
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 7.0e-29 132.9 111 57.7
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 5.2e-24 116.7 103 55.3
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.2e-23 115.5 60 95.0
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.5e-23 115.2 225 35.1
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 9.2e-21 105.9 501 25.9
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 1.2e-20 105.5 96 54.2
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.1e-20 104.8 54 92.6
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.0e-19 102.4 107 46.7
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 2.8e-17 94.4 142 42.3
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.8e-16 91.7 80 53.8
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 8.4e-14 82.8 53 66.0
FAN01G1046 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.0e-11 74.3 41 90.2
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 7.3e-10 69.7 149 30.2
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 9.0e-08 62.8 33 87.9
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 5.8e-07 60.1 33 81.8


User provided reference genes

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