Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.1e-228 796.6 442 100.0
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 8.4e-226 786.9 442 99.1
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.2e-216 756.5 442 92.1
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 2.1e-216 755.7 445 92.4
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.7e-216 755.4 445 92.6
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.2e-192 676.8 389 87.1
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 4.5e-163 578.6 390 72.3
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 1.3e-162 577.0 390 72.6
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 8.0e-160 567.8 390 71.3
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.1e-153 547.4 391 68.3
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 5.6e-153 545.0 390 66.9
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 2.3e-151 539.7 386 67.6
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.5e-145 520.4 391 64.2
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 6.2e-144 515.0 443 58.9
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 2.4e-140 503.1 407 64.1
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 4.1e-140 502.3 391 62.9
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 5.4e-140 501.9 391 63.2
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 7.8e-139 498.0 388 61.3
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 3.9e-138 495.7 385 63.4
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 1.5e-137 493.8 394 62.9
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 1.9e-137 493.4 394 60.2
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.5e-137 493.0 391 61.4
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 5.6e-137 491.9 393 59.8
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 2.1e-136 490.0 381 61.9
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 3.6e-136 489.2 390 60.3
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 4.7e-136 488.8 391 61.4
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 1.1e-135 487.6 389 60.2
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 4.0e-135 485.7 391 60.6
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 6.8e-135 485.0 391 60.4
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 1.5e-134 483.8 388 60.8
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 2.0e-134 483.4 391 60.1
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 3.7e-133 479.2 390 58.5
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 4.9e-133 478.8 387 60.7
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 1.9e-132 476.9 445 58.0
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 3.5e-131 472.6 392 60.7
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 1.0e-130 471.1 388 58.5
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 1.7e-130 470.3 393 59.8
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 3.9e-130 469.2 391 57.8
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 1.9e-129 466.8 395 58.2
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 4.3e-129 465.7 385 59.5
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 5.6e-129 465.3 387 58.9
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 9.5e-129 464.5 392 58.9
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 9.5e-129 464.5 392 58.9
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 1.4e-127 460.7 392 55.9
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 1.4e-127 460.7 392 57.9
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 2.3e-127 459.9 391 59.1
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 3.1e-127 459.5 392 59.2
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 1.2e-126 457.6 392 58.9
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 1.5e-126 457.2 391 58.3
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 2.0e-126 456.8 392 57.4
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 2.0e-126 456.8 392 57.4
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 2.0e-126 456.8 392 57.4
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 2.0e-126 456.8 443 55.8
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 5.8e-126 455.3 392 57.4
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 5.8e-126 455.3 392 56.9
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 1.3e-125 454.1 380 58.7
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 6.4e-125 451.8 394 57.4
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 1.9e-124 450.3 390 55.4
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 1.9e-124 450.3 344 63.1
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 1.9e-124 450.3 449 52.8
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 7.1e-124 448.4 444 58.8
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 7.1e-124 448.4 381 57.5
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 2.1e-123 446.8 393 54.5
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 3.5e-123 446.0 391 54.5
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 1.0e-122 444.5 393 56.7
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 1.0e-122 444.5 392 56.1
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 1.7e-122 443.7 390 54.4
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 1.9e-121 440.3 392 56.6
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 4.7e-120 435.6 457 52.3
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 8.1e-120 434.9 344 61.6
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 5.8e-118 428.7 394 54.3
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 8.4e-117 424.9 391 52.9
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 3.2e-116 422.9 344 60.5
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 4.2e-116 422.5 370 57.8
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 5.4e-116 422.2 392 52.8
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 1.2e-115 421.0 394 53.0
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 4.6e-115 419.1 343 57.1
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.0e-114 417.9 347 58.2
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.0e-114 417.9 347 58.2
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 3.0e-114 416.4 395 55.4
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 1.6e-112 410.6 446 50.4
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 4.8e-112 409.1 344 59.6
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 1.8e-111 407.1 344 59.3
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 2.0e-110 403.7 318 61.3
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 4.9e-109 399.1 389 49.6
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 5.4e-108 395.6 346 55.8
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 7.1e-108 395.2 330 58.5
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 1.6e-107 394.0 395 50.6
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 8.7e-106 388.3 399 49.1
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 1.9e-105 387.1 311 60.5
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 4.5e-102 375.9 312 58.0
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 3.2e-92 343.2 370 44.3
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 2.9e-85 320.1 309 51.8
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 6.9e-79 298.9 274 51.8
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 1.5e-78 297.7 255 58.4
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 4.4e-65 253.1 183 65.6
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 1.7e-64 251.1 372 38.4
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 2.5e-60 237.3 349 39.0
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 8.8e-58 228.8 357 37.8
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 8.2e-56 222.2 403 33.7
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 9.8e-49 198.7 280 41.8
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 2.2e-48 197.6 196 54.1
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 4.1e-47 193.4 292 40.4
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 7.5e-41 172.6 369 34.1
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 3.1e-39 167.2 392 30.1
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 3.4e-33 147.1 174 44.3
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 5.4e-31 139.8 115 58.3
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 2.5e-28 131.0 112 58.0
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 5.6e-28 129.8 112 57.1
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 1.9e-12 78.2 112 46.4
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.6e-09 67.8 55 56.4
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 9.9e-09 65.9 62 48.4
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 3.8e-08 63.9 55 61.8
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 7.1e-07 59.7 45 60.0
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 9.2e-07 59.3 48 54.2
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 7.8e-06 56.2 47 48.9


User provided reference genes

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