Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 1.1e-46 189.5 91 100.0
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 4.3e-46 187.6 91 98.9
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 1.1e-38 162.9 82 97.6
FAN14G2883 Fragaria x ananassa HOM05D007432 ORTHO05D005238 5.5e-25 117.5 59 96.6
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 1.4e-20 102.8 95 63.2
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 2.4e-20 102.1 92 62.0
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 1.0e-18 96.7 94 62.8
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 3.0e-15 85.1 86 59.3
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 8.2e-13 77.0 96 53.1
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 3.1e-12 75.1 95 51.6
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 6.9e-12 73.9 96 51.0
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 6.9e-12 73.9 93 51.6
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 9.1e-12 73.6 94 47.9
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.5e-11 72.8 91 46.2
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 2.0e-11 72.4 92 50.0
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 2.0e-11 72.4 94 48.9
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 2.6e-11 72.0 92 46.7
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 3.4e-11 71.6 97 47.4
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 5.9e-11 70.9 91 48.4
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 5.9e-11 70.9 97 47.4
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 7.7e-11 70.5 91 48.4
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 7.7e-11 70.5 97 47.4
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 1.0e-10 70.1 96 50.0
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.3e-10 69.7 96 50.0
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 1.7e-10 69.3 96 47.9
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 1.7e-10 69.3 96 47.9
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 2.2e-10 68.9 91 45.1
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 2.2e-10 68.9 100 48.0
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 2.9e-10 68.6 97 44.3
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 3.8e-10 68.2 94 46.8
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 3.8e-10 68.2 96 49.0
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 5.0e-10 67.8 91 42.9
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 5.0e-10 67.8 96 46.9
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 5.0e-10 67.8 97 46.4
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 5.0e-10 67.8 97 46.4
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 6.5e-10 67.4 89 44.9
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 6.5e-10 67.4 92 47.8
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 6.5e-10 67.4 94 47.9
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 6.5e-10 67.4 95 47.4
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 6.5e-10 67.4 93 47.3
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.1e-09 66.6 107 43.9
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 1.4e-09 66.2 96 47.9
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 1.4e-09 66.2 96 47.9
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 1.4e-09 66.2 95 47.4
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 1.4e-09 66.2 97 45.4
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 1.4e-09 66.2 91 45.1
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.9e-09 65.9 95 44.2
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 2.5e-09 65.5 92 48.9
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 2.5e-09 65.5 91 42.9
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 2.5e-09 65.5 94 47.9
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 2.5e-09 65.5 94 43.6
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 3.2e-09 65.1 95 47.4
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 3.2e-09 65.1 91 47.3
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 4.2e-09 64.7 95 43.2
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 4.2e-09 64.7 92 45.7
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 5.5e-09 64.3 91 44.0
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 7.2e-09 63.9 94 47.9
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 9.4e-09 63.5 93 47.3
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 9.4e-09 63.5 94 42.6
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 9.4e-09 63.5 95 46.3
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 1.2e-08 63.2 95 45.3
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.2e-08 63.2 100 46.0
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 1.6e-08 62.8 94 43.6
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 1.6e-08 62.8 93 45.2
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 1.6e-08 62.8 93 45.2
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 2.1e-08 62.4 98 45.9
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 2.1e-08 62.4 93 44.1
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 2.1e-08 62.4 93 44.1
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 2.1e-08 62.4 95 45.3
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 2.1e-08 62.4 94 42.6
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 2.7e-08 62.0 89 43.8
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 3.6e-08 61.6 91 46.2
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 3.6e-08 61.6 94 46.8
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 4.7e-08 61.2 95 45.3
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 4.7e-08 61.2 95 45.3
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 4.7e-08 61.2 96 43.8
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 4.7e-08 61.2 91 41.8
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 6.1e-08 60.8 94 43.6
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 7.9e-08 60.5 95 47.4
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 7.9e-08 60.5 96 40.6
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.0e-07 60.1 91 44.0
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 1.0e-07 60.1 91 44.0
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 1.8e-07 59.3 100 44.0
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 1.8e-07 59.3 86 46.5
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.8e-07 59.3 93 45.2
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 2.3e-07 58.9 91 42.9
Sc21g0002490 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.0e-07 58.5 89 41.6
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 3.9e-07 58.2 95 43.2
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 3.9e-07 58.2 95 43.2
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 3.9e-07 58.2 95 43.2
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 3.9e-07 58.2 95 43.2
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 3.9e-07 58.2 95 43.2
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 3.9e-07 58.2 91 39.6
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 3.9e-07 58.2 85 45.9
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 6.7e-07 57.4 95 43.2
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 8.8e-07 57.0 94 44.7
ClCG02G017310 Citrullus lanatus HOM05D031423 ORTHO05D005373 8.8e-07 57.0 86 43.0
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 8.8e-07 57.0 93 38.7
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.1e-06 56.6 96 40.6
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 1.5e-06 56.2 90 44.4
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 1.5e-06 56.2 93 40.9
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.0e-06 55.8 98 42.9
Sc21g0002530 Simmondsia chinensis HOM05D004838 ORTHO05D005373 2.0e-06 55.8 87 40.2
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 2.6e-06 55.5 93 43.0
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.6e-06 55.5 97 42.3
PGR142G1549 Punica granatum HOM05D000831 ORTHO05D000660 2.6e-06 55.5 81 37.0
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 2.6e-06 55.5 85 45.9
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.3e-06 55.1 98 39.8
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.3e-06 55.1 101 41.6
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 4.4e-06 54.7 91 42.9
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 4.4e-06 54.7 86 39.5
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 5.7e-06 54.3 95 42.1
Haze_06585 Corylus avellana HOM05D004838 ORTHO05D005373 5.7e-06 54.3 89 39.3
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 9.7e-06 53.5 88 38.6
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 9.7e-06 53.5 88 45.5


User provided reference genes

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