Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2634 Fragaria x ananassa HOM05D000156 ORTHO05D002715 1.4e-135 486.5 292 100.0
FAN09G2368 Fragaria x ananassa HOM05D000156 ORTHO05D002715 2.2e-123 446.0 329 75.1
FAN14G0802 Fragaria x ananassa HOM05D000156 ORTHO05D002715 1.5e-113 413.3 326 70.9
FvH4_6g24720 Fragaria vesca HOM05D000156 ORTHO05D002715 1.2e-102 377.1 283 73.1
RcHm_v2.0_Chr3g0484271 Rosa chinensis HOM05D000156 ORTHO05D002715 2.7e-81 306.2 284 63.0
Prupe.7G050600 Prunus persica HOM05D000156 ORTHO05D002715 1.3e-48 197.6 296 48.6
MD14G1079600 Malus domestica HOM05D000156 ORTHO05D002715 5.1e-40 169.1 307 41.0
CiPaw.09G041800 Carya illinoinensis HOM05D000156 ORTHO05D002715 4.2e-34 149.4 273 38.1
Duzib128G0354 Durio zibethinus HOM05D000156 ORTHO05D002715 1.2e-33 147.9 256 37.5
Cfa016757 Carpinus fangiana HOM05D000156 ORTHO05D002715 5.6e-31 139.0 280 36.1
Thecc.05G145700 Theobroma cacao HOM05D000156 ORTHO05D002715 2.1e-30 137.1 256 41.8
Ciclev10005065m.g Citrus clementina HOM05D000156 ORTHO05D002715 8.1e-30 135.2 256 38.7
QL07p005292 Quercus lobata HOM05D000156 ORTHO05D002715 1.1e-29 134.8 253 38.3
Atru.chr1.1185 Acer truncatum HOM05D000156 ORTHO05D002715 1.8e-29 134.0 308 36.0
QL07p005574 Quercus lobata HOM05D000156 ORTHO05D002715 3.4e-28 129.8 253 37.5
Potri.006G046000 Populus trichocarpa HOM05D000156 ORTHO05D002715 5.8e-28 129.0 267 39.7
TWI53G1812 Tripterygium wilfordii HOM05D000156 ORTHO05D002715 2.2e-27 127.1 318 31.8
Sabra06G0031600 Salix brachista HOM05D000156 ORTHO05D002715 3.8e-27 126.3 267 41.9
COL.COLO4_21310 Corchorus olitorius HOM05D000156 ORTHO05D002715 1.4e-26 124.4 256 35.5
Glyma.10G106000 Glycine max HOM05D000156 ORTHO05D002715 2.4e-26 123.6 257 36.2
CSS0025309 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D002715 1.6e-25 120.9 314 32.5
Manes.09G011664 Manihot esculenta HOM05D000156 ORTHO05D002715 4.6e-25 119.4 256 36.3
Manes.09G015700 Manihot esculenta HOM05D000156 ORTHO05D002715 1.0e-24 118.2 256 36.3
Phvul.007G249900 Phaseolus vulgaris HOM05D000156 ORTHO05D002715 1.8e-24 117.5 257 38.9
Cc06_g18300 Coffea canephora HOM05D000156 ORTHO05D002715 3.0e-24 116.7 261 37.9
Haze_19744 Corylus avellana HOM05D000156 ORTHO05D002715 3.0e-24 116.7 336 30.4
VMungo0720G0783 Vigna mungo HOM05D000156 ORTHO05D002715 1.5e-23 114.4 256 38.3
TWI77G0232 Tripterygium wilfordii HOM05D000156 ORTHO05D002715 1.9e-23 114.0 317 31.5
BraA02t04795Z Brassica rapa HOM05D000156 ORTHO05D002715 6.2e-22 109.0 282 34.8
BolC2t06129H Brassica oleracea HOM05D000156 ORTHO05D002715 1.4e-21 107.8 275 33.8
Potri.016G042700 Populus trichocarpa HOM05D000156 ORTHO05D002715 1.8e-21 107.5 290 36.2
Gorai.006G134500 Gossypium raimondii HOM05D000156 ORTHO05D002715 2.4e-21 107.1 257 33.1
BcaC03g12969 Brassica carinata HOM05D000156 ORTHO05D002715 3.1e-21 106.7 274 33.9
C02p01640 Brassica napus HOM05D000156 ORTHO05D002715 3.1e-21 106.7 265 34.7
Gohir.A13G011300 Gossypium hirsutum HOM05D000156 ORTHO05D002715 4.0e-21 106.3 251 32.3
Gohir.D09G116200 Gossypium hirsutum HOM05D000156 ORTHO05D002715 6.9e-21 105.5 258 32.6
Gohir.D13G012000 Gossypium hirsutum HOM05D000156 ORTHO05D002715 1.2e-20 104.8 251 31.9
Gorai.013G013200 Gossypium raimondii HOM05D000156 ORTHO05D002715 1.2e-20 104.8 251 31.9
AT5G03960 Arabidopsis thaliana HOM05D000156 ORTHO05D002715 3.4e-20 103.2 253 36.0
BcaB05g21791 Brassica carinata HOM05D000156 ORTHO05D002715 4.5e-20 102.8 284 38.0
Hma1.2p1_2420F.1_g321860 Hydrangea macrophylla HOM05D000156 ORTHO05D002715 4.5e-20 102.8 255 32.9
Manes.08G054200 Manihot esculenta HOM05D000156 ORTHO05D002715 4.5e-20 102.8 320 30.6
arahy.Tifrunner.gnm1.ann1.C7PAZI Arachis hypogaea HOM05D000156 ORTHO05D002715 5.8e-20 102.4 265 35.5
CARHR209320 Cardamine hirsuta HOM05D000156 ORTHO05D002715 5.8e-20 102.4 243 37.4
CiPaw.09G041400 Carya illinoinensis HOM05D000156 ORTHO05D002715 5.8e-20 102.4 218 35.3
Ca_12265_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 5.8e-20 102.4 255 32.5
Ca_30549_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 5.8e-20 102.4 255 32.5
THA.LOC104823218 Tarenaya hassleriana HOM05D000156 ORTHO05D002715 5.8e-20 102.4 260 38.1
C09p72980 Brassica napus HOM05D000156 ORTHO05D002715 1.0e-19 101.7 241 37.8
BolC9t60033H Brassica oleracea HOM05D000156 ORTHO05D002715 1.0e-19 101.7 241 37.8
Thhalv10013765m.g Eutrema salsugineum HOM05D000156 ORTHO05D002715 1.3e-19 101.3 264 36.4
Psat6g117120 Pisum sativum HOM05D000156 ORTHO05D002715 1.3e-19 101.3 261 32.6
arahy.Tifrunner.gnm1.ann1.J6EHGP Arachis hypogaea HOM05D000156 ORTHO05D002715 1.7e-19 100.9 265 36.2
BolC9t60025H Brassica oleracea HOM05D007779 ORTHO05D009863 1.7e-19 100.9 243 32.9
Gohir.A09G120100 Gossypium hirsutum HOM05D000156 ORTHO05D002715 2.2e-19 100.5 257 31.5
Medtr1g051810 Medicago truncatula HOM05D000156 ORTHO05D002715 2.9e-19 100.1 257 32.3
Sed0019433 Sechium edule HOM05D000156 ORTHO05D002715 2.9e-19 100.1 261 31.8
Nitab4.5_0000826g0150 Nicotiana tabacum HOM05D000156 ORTHO05D002715 2.5e-18 97.1 253 32.8
SalBow6G3254 Salvia bowleyana HOM05D000156 ORTHO05D002715 3.2e-18 96.7 255 31.8
SalBow6G3640 Salvia bowleyana HOM05D000156 ORTHO05D002715 3.2e-18 96.7 255 31.8
A10p32170 Brassica napus HOM05D000156 ORTHO05D002715 5.5e-18 95.9 241 36.9
BraA10t45261Z Brassica rapa HOM05D000156 ORTHO05D002715 5.5e-18 95.9 241 36.9
Manes.09G016644 Manihot esculenta HOM05D000156 ORTHO05D002715 5.5e-18 95.9 238 34.5
Sp6g38790 Schrenkiella parvula HOM05D000156 ORTHO05D002715 5.5e-18 95.9 251 35.1
ClCG10G015630 Citrullus lanatus HOM05D000156 ORTHO05D002715 7.1e-18 95.5 260 30.8
BcaC06g32098 Brassica carinata HOM05D000156 ORTHO05D002715 9.3e-18 95.1 231 35.9
Dinv18685 Davidia involucrata HOM05D000156 ORTHO05D002715 1.6e-17 94.4 259 32.0
AL6G13550 Arabidopsis lyrata HOM05D000156 ORTHO05D002715 2.1e-17 94.0 253 34.0
MSTRG.19834 Avicennia marina HOM05D000156 ORTHO05D002715 2.1e-17 94.0 255 31.4
GSVIVG01033546001 Vitis vinifera HOM05D000156 ORTHO05D002715 2.1e-17 94.0 261 30.3
C09p72900 Brassica napus HOM05D007779 ORTHO05D009863 3.5e-17 93.2 224 33.9
Migut.J01710 Erythranthe guttata HOM05D000156 ORTHO05D002715 6.0e-17 92.4 244 30.7
Carub.0006s0290 Capsella rubella HOM05D000156 ORTHO05D002715 7.9e-17 92.0 258 33.7
AUR62024525 Chenopodium quinoa HOM05D000156 ORTHO05D002715 2.3e-16 90.5 249 36.9
Dinv39674 Davidia involucrata HOM05D000156 ORTHO05D002715 2.3e-16 90.5 265 31.3
Lj5g0017611 Lotus japonicus HOM05D000156 ORTHO05D002715 2.3e-16 90.5 243 37.9
EL10Ac3g07154 Beta vulgaris HOM05D000156 ORTHO05D002715 5.1e-16 89.4 248 35.5
AUR62026117 Chenopodium quinoa HOM05D000156 ORTHO05D002715 5.1e-16 89.4 222 39.2
Lalb_Chr06g0173521 Lupinus albus HOM05D000156 ORTHO05D002715 1.5e-15 87.8 257 30.7
Sopen04g008560 Solanum pennellii HOM05D000156 ORTHO05D002715 1.5e-15 87.8 245 29.4
GSVIVG01033548001 Vitis vinifera HOM05D000156 ORTHO05D002715 1.5e-15 87.8 263 33.5
C09p72920 Brassica napus HOM05D007779 ORTHO05D009863 2.5e-15 87.0 214 31.8
Lj1C1123G4 Lonicera japonica HOM05D000156 ORTHO05D002715 2.5e-15 87.0 223 37.2
TAR623G1675 Trochodendron aralioides HOM05D000156 ORTHO05D002715 4.3e-15 86.3 255 31.4
Solyc04g016480.3 Solanum lycopersicum HOM05D000156 ORTHO05D002715 7.4e-15 85.5 253 29.2
PGR142G0532 Punica granatum HOM05D000156 ORTHO05D002715 2.1e-14 84.0 238 34.5
Manes.09G014980 Manihot esculenta HOM05D000156 ORTHO05D002715 3.7e-14 83.2 108 50.9
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 4.8e-14 82.8 277 28.9
Hund24651 Selenicereus undatus HOM05D000156 ORTHO05D002715 6.3e-14 82.4 244 30.7
Manes.09G016741 Manihot esculenta HOM05D000156 ORTHO05D002715 8.2e-14 82.0 111 50.5
PGSC0003DMG400012720 Solanum tuberosum HOM05D000156 ORTHO05D002715 1.8e-13 80.9 253 28.5
Lalb_Chr01g0000581 Lupinus albus HOM05D000156 ORTHO05D002715 4.1e-13 79.7 309 27.5
Haze_03104 Corylus avellana HOM05D000156 ORTHO05D002715 3.4e-12 76.6 310 25.8
Lalb_Chr20g0110331 Lupinus albus HOM05D000156 ORTHO05D002715 4.5e-12 76.3 302 30.1
Glyma.09G225300 Glycine max HOM05D000156 ORTHO05D002715 1.0e-11 75.1 266 26.7
FAN10G1302 Fragaria x ananassa HOM05D000156 ORTHO05D002715 1.3e-11 74.7 250 28.8
FvH4_7g02140 Fragaria vesca HOM05D000156 ORTHO05D002715 3.8e-11 73.2 250 28.4
FAN06G2001 Fragaria x ananassa HOM05D000156 ORTHO05D002715 3.8e-11 73.2 250 28.4
MBI13_g30228_MAGBIO Magnolia biondii HOM05D000156 ORTHO05D002715 6.5e-11 72.4 252 27.0
CiPaw.14G005000 Carya illinoinensis HOM05D000156 ORTHO05D002715 8.5e-11 72.0 267 26.6
FAN01G1538 Fragaria x ananassa HOM05D000156 ORTHO05D002715 1.1e-10 71.6 250 28.4
RcHm_v2.0_Chr1g0319351 Rosa chinensis HOM05D000156 ORTHO05D002715 1.1e-10 71.6 252 29.0
Dinv05031 Davidia involucrata HOM05D000156 ORTHO05D002715 1.9e-10 70.9 261 29.5
Rhsim03G0030700 Rhododendron simsii HOM05D000156 ORTHO05D002715 1.9e-10 70.9 258 27.1
GSVIVG01000865001 Vitis vinifera HOM05D000156 ORTHO05D002715 2.5e-10 70.5 278 27.0
MELO3C009812.2 Cucumis melo HOM05D000156 ORTHO05D002715 3.2e-10 70.1 272 26.5
Rhsim07G0061700 Rhododendron simsii HOM05D000156 ORTHO05D002715 3.2e-10 70.1 256 25.8
Cpa.g.sc120.3 Carica papaya HOM05D000156 ORTHO05D002715 4.2e-10 69.7 78 55.1
FAN03G1059 Fragaria x ananassa HOM05D000156 ORTHO05D002715 5.5e-10 69.3 250 29.2
CsaV3_3G040780 Cucumis sativus L. HOM05D005441 ORTHO05D006879 7.2e-10 68.9 113 42.5
Cpa.g.sc197.18 Carica papaya HOM05D000156 ORTHO05D002715 9.3e-10 68.6 262 27.1
Atru.chr11.2561 Acer truncatum HOM05D000156 ORTHO05D002715 2.1e-09 67.4 267 25.1
Ah.04g151370 Amaranthus hybridus HOM05D004475 ORTHO05D005235 2.7e-09 67.0 222 33.8
QL04p012988 Quercus lobata HOM05D000156 ORTHO05D002715 2.7e-09 67.0 272 30.5
Hma1.2p1_0579F.1_g182690 Hydrangea macrophylla HOM05D000156 ORTHO05D002715 3.6e-09 66.6 246 24.8
BolC9t60027H Brassica oleracea HOM05D000156 ORTHO05D002715 7.9e-09 65.5 74 44.6
Psat7g169560 Pisum sativum HOM05D000156 ORTHO05D002715 1.0e-08 65.1 248 25.8
Phvul.005G033800 Phaseolus vulgaris HOM05D000156 ORTHO05D002715 1.8e-08 64.3 260 25.4
Manes.09G011853 Manihot esculenta HOM05D000156 ORTHO05D002715 2.3e-08 63.9 51 60.8
Phvul.011G014100 Phaseolus vulgaris HOM05D000156 ORTHO05D002715 2.3e-08 63.9 337 25.2
Eucgr.K01575 Eucalyptus grandis HOM05D000156 ORTHO05D002715 3.9e-08 63.2 227 29.5
Thecc.10G003100 Theobroma cacao HOM05D000156 ORTHO05D002715 3.9e-08 63.2 281 24.2
VMungo1127G1204 Vigna mungo HOM05D000156 ORTHO05D002715 3.9e-08 63.2 337 24.3
FvH4_5g06194 Fragaria vesca HOM05D013306 ORTHO05D198300 5.1e-08 62.8 36 86.1
Actinidia06277 Actinidia chinensis HOM05D000156 ORTHO05D002715 6.7e-08 62.4 243 26.3
QL04p012371 Quercus lobata HOM05D000156 ORTHO05D002715 6.7e-08 62.4 267 30.7
vmacro21957 Vaccinium macrocarpon HOM05D000156 ORTHO05D002715 1.5e-07 61.2 104 39.4
Ciclev10031481m.g Citrus clementina HOM05D000156 ORTHO05D002715 1.9e-07 60.8 262 25.2
Duzib114G0688 Durio zibethinus HOM05D000156 ORTHO05D001430 1.9e-07 60.8 249 30.1
Medtr0047s0040 Medicago truncatula HOM05D000156 ORTHO05D002715 1.9e-07 60.8 239 24.3
CAN.G1237.7 Capsicum annuum HOM05D000156 ORTHO05D002715 2.5e-07 60.5 110 39.1
Nn2g15072 Nelumbo nucifera HOM05D000156 ORTHO05D002715 2.5e-07 60.5 107 38.3
TPR.G20246 Trifolium pratense HOM05D000156 ORTHO05D002715 2.5e-07 60.5 252 25.0
Ca_26246_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 3.3e-07 60.1 252 25.8
Glyma.12G011600 Glycine max HOM05D000156 ORTHO05D002715 3.3e-07 60.1 266 24.8
Peaxi162Scf00130g00925 Petunia axillaris HOM05D000156 ORTHO05D002715 3.3e-07 60.1 110 38.2
Oeu024769.1 Olea europaea HOM05D000156 ORTHO05D002715 5.7e-07 59.3 69 43.5
Sc13g0001530 Simmondsia chinensis HOM05D000156 ORTHO05D002715 7.4e-07 58.9 217 33.6
Sopen10g029890 Solanum pennellii HOM05D000156 ORTHO05D002715 7.4e-07 58.9 264 24.2
VMungo1080G0683 Vigna mungo HOM05D000156 ORTHO05D002715 7.4e-07 58.9 264 24.2
Eucgr.J01207 Eucalyptus grandis HOM05D000156 ORTHO05D002715 9.7e-07 58.5 265 23.0
AT1G76705 Arabidopsis thaliana HOM05D000156 ORTHO05D002715 1.3e-06 58.2 47 63.8
Nn7g36436 Nelumbo nucifera HOM05D000156 ORTHO05D002715 1.3e-06 58.2 71 40.8
Aqoxy1G03235 Aquilegia oxysepala HOM05D000156 ORTHO05D002715 1.6e-06 57.8 250 29.2
CANSAT80G0587 Cannabis sativa HOM05D000156 ORTHO05D002715 1.6e-06 57.8 249 24.9
Lj3g0020554 Lotus japonicus HOM05D000156 ORTHO05D002715 1.6e-06 57.8 263 24.0
Solyc10g079240.2 Solanum lycopersicum HOM05D000156 ORTHO05D002715 1.6e-06 57.8 264 24.2
TWI38G0747 Tripterygium wilfordii HOM05D000156 ORTHO05D002715 1.6e-06 57.8 73 41.1
Gohir.A06G158700 Gossypium hirsutum HOM05D000156 ORTHO05D002715 2.2e-06 57.4 238 24.4
Nitab4.5_0000082g0330 Nicotiana tabacum HOM05D000156 ORTHO05D002715 2.8e-06 57.0 70 44.3
Nitab4.5_0001618g0240 Nicotiana tabacum HOM05D000156 ORTHO05D002715 2.8e-06 57.0 110 40.9
THA.LOC104816672 Tarenaya hassleriana HOM05D000156 ORTHO05D002715 2.8e-06 57.0 77 42.9
Lj3g0014501 Lotus japonicus HOM05D000156 ORTHO05D002715 4.8e-06 56.2 258 24.0
Sed0009297 Sechium edule HOM05D000156 ORTHO05D002715 4.8e-06 56.2 258 27.5
Gorai.010G192000 Gossypium raimondii HOM05D000156 ORTHO05D002715 6.3e-06 55.8 239 24.7
CSS0001203 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D002715 8.2e-06 55.5 54 48.1
SGA_v2.0_scaffold105G30362 Striga asiatica HOM05D000156 ORTHO05D002715 8.2e-06 55.5 52 59.6
TAR636G1185 Trochodendron aralioides HOM05D000156 ORTHO05D001430 8.2e-06 55.5 266 31.2


User provided reference genes

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