Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.5e-89 332.0 162 100.0
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.5e-54 214.9 149 76.5
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 2.5e-44 182.6 136 72.1
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 7.9e-43 177.6 136 71.3
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 2.2e-40 169.5 136 66.9
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 5.9e-38 161.4 136 64.0
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 4.7e-35 151.8 136 61.8
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 6.1e-35 151.4 138 60.9
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 1.0e-34 150.6 135 58.5
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 1.4e-34 150.2 135 57.0
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 1.4e-34 150.2 135 58.5
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 2.3e-34 149.4 136 62.5
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.3e-34 149.4 135 60.7
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 3.9e-34 148.7 143 55.9
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 6.7e-34 147.9 136 61.0
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 6.7e-34 147.9 134 59.7
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 8.8e-34 147.5 136 60.3
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.5e-33 146.7 135 59.3
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.5e-33 146.7 135 59.3
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.5e-33 146.7 136 58.8
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 2.6e-33 146.0 135 57.8
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 3.3e-33 145.6 135 57.0
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 3.3e-33 145.6 136 58.1
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 4.4e-33 145.2 136 58.8
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 7.4e-33 144.4 137 58.4
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 7.4e-33 144.4 136 58.1
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 9.7e-33 144.1 136 57.4
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 1.3e-32 143.7 135 59.3
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 1.7e-32 143.3 135 55.6
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 3.7e-32 142.1 135 57.8
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.7e-32 142.1 106 72.6
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 3.7e-32 142.1 137 56.9
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 4.8e-32 141.7 139 56.1
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 8.2e-32 141.0 136 57.4
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 8.2e-32 141.0 136 55.9
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 1.4e-31 140.2 138 58.0
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.4e-31 140.2 136 58.1
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 1.4e-31 140.2 138 57.2
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.8e-31 139.8 137 59.1
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 1.8e-31 139.8 135 56.3
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 2.4e-31 139.4 136 58.1
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 4.1e-31 138.7 140 54.3
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 4.1e-31 138.7 136 57.4
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 5.3e-31 138.3 137 56.2
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 9.1e-31 137.5 136 55.9
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 2.6e-30 136.0 135 55.6
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 2.6e-30 136.0 137 56.9
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 4.5e-30 135.2 136 56.6
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 4.5e-30 135.2 136 55.9
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.9e-30 134.8 133 54.1
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.9e-30 134.8 133 54.1
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 5.9e-30 134.8 136 55.9
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.7e-30 134.4 133 54.1
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 7.7e-30 134.4 134 56.0
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 7.7e-30 134.4 138 52.9
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 1.0e-29 134.0 139 55.4
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 1.0e-29 134.0 138 53.6
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 1.3e-29 133.7 135 55.6
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-29 133.3 133 53.4
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.7e-29 133.3 133 53.4
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 2.2e-29 132.9 134 56.7
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.9e-29 132.5 141 56.7
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 3.8e-29 132.1 143 51.0
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.8e-29 132.1 138 55.1
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 3.8e-29 132.1 134 55.2
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 6.5e-29 131.3 138 54.3
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 6.5e-29 131.3 145 53.1
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 6.5e-29 131.3 133 54.9
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 8.5e-29 131.0 146 50.7
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 8.5e-29 131.0 143 51.0
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 8.5e-29 131.0 137 54.0
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 8.5e-29 131.0 143 51.7
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.1e-28 130.6 138 55.1
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 1.1e-28 130.6 137 54.7
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 1.1e-28 130.6 136 52.9
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.5e-28 130.2 143 51.0
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.5e-28 130.2 135 52.6
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 4.2e-28 128.6 145 51.0
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 4.2e-28 128.6 145 51.0
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 4.2e-28 128.6 140 53.6
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 4.2e-28 128.6 135 54.1
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 4.2e-28 128.6 135 54.1
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 5.5e-28 128.3 135 51.9
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 5.5e-28 128.3 136 53.7
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 9.4e-28 127.5 143 50.3
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 9.4e-28 127.5 136 53.7
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 9.4e-28 127.5 146 51.4
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 9.4e-28 127.5 135 53.3
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.2e-27 127.1 145 50.3
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.2e-27 127.1 135 52.6
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.2e-27 127.1 96 68.8
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.2e-27 127.1 135 53.3
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.6e-27 126.7 135 53.3
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 2.1e-27 126.3 152 50.0
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.1e-27 126.3 124 58.1
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 2.1e-27 126.3 140 52.9
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 2.7e-27 125.9 136 50.0
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 3.6e-27 125.6 135 51.9
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 3.6e-27 125.6 136 51.5
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 4.7e-27 125.2 135 52.6
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 4.7e-27 125.2 133 51.1
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 6.1e-27 124.8 135 51.9
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 6.1e-27 124.8 141 52.5
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 8.0e-27 124.4 131 52.7
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 1.4e-26 123.6 138 50.0
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 1.4e-26 123.6 136 52.9
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 1.8e-26 123.2 134 53.0
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 2.3e-26 122.9 136 50.7
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 6.7e-26 121.3 135 51.9
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 6.7e-26 121.3 136 50.0
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 8.8e-26 120.9 76 73.7
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 4.4e-25 118.6 134 50.7
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 5.7e-25 118.2 137 49.6
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 7.5e-25 117.9 137 50.4
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.1e-23 114.0 140 47.9
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.4e-23 113.6 137 48.2
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 5.3e-23 111.7 86 65.1
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 1.2e-22 110.5 136 49.3
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 3.5e-22 109.0 72 69.4
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 1.3e-21 107.1 132 47.0
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 2.9e-21 105.9 148 42.6
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 7.2e-20 101.3 93 60.2
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 1.6e-19 100.1 126 44.4
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 4.7e-19 98.6 151 41.7
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 2.6e-17 92.8 73 60.3
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 4.4e-17 92.0 59 72.9
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 1.3e-16 90.5 58 63.8
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 3.7e-16 89.0 56 75.0
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 3.7e-16 89.0 56 75.0
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 6.3e-16 88.2 142 40.8
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 8.3e-16 87.8 142 40.8
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 1.8e-15 86.7 58 69.0
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 4.1e-15 85.5 54 68.5
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 7.0e-15 84.7 152 38.2
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 1.2e-14 84.0 73 53.4
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.0e-14 83.2 67 56.7
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 8.5e-13 77.8 76 50.0
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 6.1e-11 71.6 86 52.3
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.0e-11 71.2 93 44.1
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.4e-10 70.5 188 33.5
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-10 70.1 93 45.2
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.8e-10 70.1 93 44.1
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 1.5e-09 67.0 79 51.9
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 7.5e-09 64.7 128 35.2
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 3.1e-07 59.3 32 78.1
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.7e-06 54.7 88 42.0


User provided reference genes

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